Experiment: MRS 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04825 and HMPREF1078_RS04830 are separated by 1 nucleotides HMPREF1078_RS04830 and HMPREF1078_RS04835 are separated by 9 nucleotides HMPREF1078_RS04835 and HMPREF1078_RS04840 overlap by 12 nucleotides
HMPREF1078_RS04825: HMPREF1078_RS04825 - decaprenyl-phosphate phosphoribosyltransferase, at 214,367 to 215,263
_RS04825
HMPREF1078_RS04830: HMPREF1078_RS04830 - HAD-IB family hydrolase, at 215,265 to 215,858
_RS04830
HMPREF1078_RS04835: HMPREF1078_RS04835 - DUF6080 domain-containing protein, at 215,868 to 217,148
_RS04835
HMPREF1078_RS04840: HMPREF1078_RS04840 - type IX secretion system sortase PorU, at 217,137 to 220,502
_RS04840
Position (kb) 215
216
217
218 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 214.990 kb on + strand, within HMPREF1078_RS04825 at 214.990 kb on + strand, within HMPREF1078_RS04825 at 214.991 kb on - strand, within HMPREF1078_RS04825 at 215.048 kb on + strand, within HMPREF1078_RS04825 at 215.048 kb on + strand, within HMPREF1078_RS04825 at 215.049 kb on - strand, within HMPREF1078_RS04825 at 215.052 kb on + strand, within HMPREF1078_RS04825 at 215.052 kb on + strand, within HMPREF1078_RS04825 at 215.053 kb on - strand, within HMPREF1078_RS04825 at 215.057 kb on + strand, within HMPREF1078_RS04825 at 215.057 kb on + strand, within HMPREF1078_RS04825 at 215.097 kb on - strand, within HMPREF1078_RS04825 at 215.102 kb on + strand, within HMPREF1078_RS04825 at 215.102 kb on + strand, within HMPREF1078_RS04825 at 215.103 kb on - strand, within HMPREF1078_RS04825 at 215.196 kb on + strand at 215.255 kb on - strand at 215.378 kb on + strand, within HMPREF1078_RS04830 at 215.511 kb on - strand, within HMPREF1078_RS04830 at 215.669 kb on + strand, within HMPREF1078_RS04830 at 215.779 kb on + strand, within HMPREF1078_RS04830 at 215.779 kb on + strand, within HMPREF1078_RS04830 at 215.779 kb on + strand, within HMPREF1078_RS04830 at 215.779 kb on + strand, within HMPREF1078_RS04830 at 215.779 kb on + strand, within HMPREF1078_RS04830 at 215.780 kb on - strand, within HMPREF1078_RS04830 at 215.780 kb on - strand, within HMPREF1078_RS04830 at 215.780 kb on - strand, within HMPREF1078_RS04830 at 215.838 kb on - strand at 215.857 kb on - strand at 215.862 kb on + strand at 215.862 kb on + strand at 215.863 kb on - strand at 215.864 kb on + strand at 215.864 kb on + strand at 215.867 kb on + strand at 215.867 kb on + strand at 215.867 kb on + strand at 215.868 kb on - strand at 215.868 kb on - strand at 215.868 kb on - strand at 215.927 kb on + strand at 216.024 kb on - strand, within HMPREF1078_RS04835 at 216.040 kb on + strand, within HMPREF1078_RS04835 at 216.068 kb on - strand, within HMPREF1078_RS04835 at 216.082 kb on + strand, within HMPREF1078_RS04835 at 216.083 kb on - strand, within HMPREF1078_RS04835 at 216.238 kb on + strand, within HMPREF1078_RS04835 at 216.311 kb on - strand, within HMPREF1078_RS04835 at 216.352 kb on + strand, within HMPREF1078_RS04835 at 216.444 kb on - strand, within HMPREF1078_RS04835 at 216.444 kb on - strand, within HMPREF1078_RS04835 at 216.445 kb on + strand, within HMPREF1078_RS04835 at 216.445 kb on + strand, within HMPREF1078_RS04835 at 216.446 kb on - strand, within HMPREF1078_RS04835 at 216.536 kb on + strand, within HMPREF1078_RS04835 at 216.693 kb on + strand, within HMPREF1078_RS04835 at 216.756 kb on - strand, within HMPREF1078_RS04835 at 216.800 kb on - strand, within HMPREF1078_RS04835 at 216.904 kb on + strand, within HMPREF1078_RS04835 at 216.905 kb on - strand, within HMPREF1078_RS04835 at 216.905 kb on - strand, within HMPREF1078_RS04835 at 216.913 kb on + strand, within HMPREF1078_RS04835 at 216.913 kb on + strand, within HMPREF1078_RS04835 at 216.914 kb on - strand, within HMPREF1078_RS04835 at 216.914 kb on - strand, within HMPREF1078_RS04835 at 216.917 kb on + strand, within HMPREF1078_RS04835 at 216.917 kb on + strand, within HMPREF1078_RS04835 at 216.917 kb on + strand, within HMPREF1078_RS04835 at 216.917 kb on + strand, within HMPREF1078_RS04835 at 216.918 kb on - strand, within HMPREF1078_RS04835 at 216.922 kb on - strand, within HMPREF1078_RS04835 at 216.925 kb on + strand, within HMPREF1078_RS04835 at 217.031 kb on - strand at 217.032 kb on + strand at 217.032 kb on + strand at 217.033 kb on - strand at 217.033 kb on - strand at 217.033 kb on - strand at 217.056 kb on + strand at 217.125 kb on - strand at 217.189 kb on + strand at 217.213 kb on - strand at 217.214 kb on + strand at 217.214 kb on + strand at 217.214 kb on + strand at 217.215 kb on - strand at 217.215 kb on - strand at 217.215 kb on - strand at 217.215 kb on - strand at 217.215 kb on - strand at 217.216 kb on + strand at 217.216 kb on + strand at 217.216 kb on + strand at 217.216 kb on + strand at 217.216 kb on + strand at 217.217 kb on - strand at 217.217 kb on - strand at 217.232 kb on + strand at 217.382 kb on + strand at 217.382 kb on + strand at 217.383 kb on - strand at 217.383 kb on - strand at 217.472 kb on + strand at 217.494 kb on - strand, within HMPREF1078_RS04840 at 217.494 kb on - strand, within HMPREF1078_RS04840 at 217.494 kb on - strand, within HMPREF1078_RS04840 at 217.527 kb on - strand, within HMPREF1078_RS04840 at 217.527 kb on - strand, within HMPREF1078_RS04840 at 217.527 kb on - strand, within HMPREF1078_RS04840 at 217.527 kb on - strand, within HMPREF1078_RS04840 at 217.590 kb on + strand, within HMPREF1078_RS04840 at 217.590 kb on + strand, within HMPREF1078_RS04840 at 217.600 kb on + strand, within HMPREF1078_RS04840 at 217.604 kb on - strand, within HMPREF1078_RS04840 at 217.619 kb on - strand, within HMPREF1078_RS04840 at 217.655 kb on + strand, within HMPREF1078_RS04840 at 217.656 kb on - strand, within HMPREF1078_RS04840 at 217.656 kb on - strand, within HMPREF1078_RS04840 at 217.656 kb on - strand, within HMPREF1078_RS04840 at 217.697 kb on + strand, within HMPREF1078_RS04840 at 217.698 kb on - strand, within HMPREF1078_RS04840 at 217.771 kb on + strand, within HMPREF1078_RS04840 at 217.771 kb on + strand, within HMPREF1078_RS04840 at 217.771 kb on + strand, within HMPREF1078_RS04840 at 217.772 kb on - strand, within HMPREF1078_RS04840 at 217.772 kb on - strand, within HMPREF1078_RS04840 at 217.774 kb on - strand, within HMPREF1078_RS04840 at 217.799 kb on + strand, within HMPREF1078_RS04840 at 217.877 kb on + strand, within HMPREF1078_RS04840 at 217.889 kb on - strand, within HMPREF1078_RS04840 at 218.002 kb on + strand, within HMPREF1078_RS04840 at 218.034 kb on + strand, within HMPREF1078_RS04840 at 218.094 kb on + strand, within HMPREF1078_RS04840 at 218.095 kb on - strand, within HMPREF1078_RS04840 at 218.096 kb on + strand, within HMPREF1078_RS04840 at 218.096 kb on + strand, within HMPREF1078_RS04840 at 218.097 kb on - strand, within HMPREF1078_RS04840 at 218.113 kb on - strand, within HMPREF1078_RS04840 at 218.113 kb on - strand, within HMPREF1078_RS04840
Per-strain Table
Position Strand Gene LocusTag Fraction MRS 1 x (C) remove 214,990 + HMPREF1078_RS04825 0.69 +0.0 214,990 + HMPREF1078_RS04825 0.69 +0.5 214,991 - HMPREF1078_RS04825 0.70 -0.5 215,048 + HMPREF1078_RS04825 0.76 -0.3 215,048 + HMPREF1078_RS04825 0.76 -0.0 215,049 - HMPREF1078_RS04825 0.76 -1.7 215,052 + HMPREF1078_RS04825 0.76 -1.3 215,052 + HMPREF1078_RS04825 0.76 -0.3 215,053 - HMPREF1078_RS04825 0.76 -0.2 215,057 + HMPREF1078_RS04825 0.77 +1.0 215,057 + HMPREF1078_RS04825 0.77 -0.9 215,097 - HMPREF1078_RS04825 0.81 +0.3 215,102 + HMPREF1078_RS04825 0.82 -0.5 215,102 + HMPREF1078_RS04825 0.82 +0.4 215,103 - HMPREF1078_RS04825 0.82 -0.2 215,196 + +0.3 215,255 - -0.8 215,378 + HMPREF1078_RS04830 0.19 -0.5 215,511 - HMPREF1078_RS04830 0.41 -1.2 215,669 + HMPREF1078_RS04830 0.68 +0.6 215,779 + HMPREF1078_RS04830 0.87 +0.1 215,779 + HMPREF1078_RS04830 0.87 -0.2 215,779 + HMPREF1078_RS04830 0.87 -0.6 215,779 + HMPREF1078_RS04830 0.87 +0.4 215,779 + HMPREF1078_RS04830 0.87 -0.2 215,780 - HMPREF1078_RS04830 0.87 -0.2 215,780 - HMPREF1078_RS04830 0.87 -0.2 215,780 - HMPREF1078_RS04830 0.87 -0.3 215,838 - +0.9 215,857 - +1.0 215,862 + +0.5 215,862 + -0.3 215,863 - +0.1 215,864 + -0.2 215,864 + -0.9 215,867 + +0.8 215,867 + -0.8 215,867 + -1.1 215,868 - +0.6 215,868 - +0.0 215,868 - +0.7 215,927 + -0.4 216,024 - HMPREF1078_RS04835 0.12 +1.1 216,040 + HMPREF1078_RS04835 0.13 -1.2 216,068 - HMPREF1078_RS04835 0.16 +0.0 216,082 + HMPREF1078_RS04835 0.17 +0.4 216,083 - HMPREF1078_RS04835 0.17 +0.5 216,238 + HMPREF1078_RS04835 0.29 +0.3 216,311 - HMPREF1078_RS04835 0.35 +0.0 216,352 + HMPREF1078_RS04835 0.38 +0.2 216,444 - HMPREF1078_RS04835 0.45 -2.6 216,444 - HMPREF1078_RS04835 0.45 +2.9 216,445 + HMPREF1078_RS04835 0.45 +0.1 216,445 + HMPREF1078_RS04835 0.45 +0.7 216,446 - HMPREF1078_RS04835 0.45 +0.1 216,536 + HMPREF1078_RS04835 0.52 +0.7 216,693 + HMPREF1078_RS04835 0.64 -0.7 216,756 - HMPREF1078_RS04835 0.69 -0.0 216,800 - HMPREF1078_RS04835 0.73 -0.4 216,904 + HMPREF1078_RS04835 0.81 +0.3 216,905 - HMPREF1078_RS04835 0.81 +0.2 216,905 - HMPREF1078_RS04835 0.81 -0.2 216,913 + HMPREF1078_RS04835 0.82 +1.7 216,913 + HMPREF1078_RS04835 0.82 +0.4 216,914 - HMPREF1078_RS04835 0.82 -0.0 216,914 - HMPREF1078_RS04835 0.82 +0.9 216,917 + HMPREF1078_RS04835 0.82 +0.8 216,917 + HMPREF1078_RS04835 0.82 +1.1 216,917 + HMPREF1078_RS04835 0.82 +0.3 216,917 + HMPREF1078_RS04835 0.82 +0.6 216,918 - HMPREF1078_RS04835 0.82 +1.3 216,922 - HMPREF1078_RS04835 0.82 +0.7 216,925 + HMPREF1078_RS04835 0.83 +1.1 217,031 - +1.0 217,032 + +1.1 217,032 + +1.0 217,033 - +0.1 217,033 - -0.1 217,033 - -1.0 217,056 + +0.1 217,125 - +0.1 217,189 + -0.7 217,213 - +0.7 217,214 + -0.9 217,214 + -1.4 217,214 + +1.0 217,215 - -2.3 217,215 - -0.5 217,215 - +0.3 217,215 - -1.0 217,215 - -1.4 217,216 + -0.7 217,216 + +0.3 217,216 + -0.3 217,216 + -1.4 217,216 + -0.3 217,217 - -0.5 217,217 - -1.2 217,232 + -1.8 217,382 + -0.0 217,382 + +1.3 217,383 - -2.4 217,383 - +0.7 217,472 + -2.1 217,494 - HMPREF1078_RS04840 0.11 -3.0 217,494 - HMPREF1078_RS04840 0.11 -2.0 217,494 - HMPREF1078_RS04840 0.11 -2.8 217,527 - HMPREF1078_RS04840 0.12 -3.0 217,527 - HMPREF1078_RS04840 0.12 -1.0 217,527 - HMPREF1078_RS04840 0.12 -0.9 217,527 - HMPREF1078_RS04840 0.12 -0.5 217,590 + HMPREF1078_RS04840 0.13 -2.6 217,590 + HMPREF1078_RS04840 0.13 -1.2 217,600 + HMPREF1078_RS04840 0.14 -1.6 217,604 - HMPREF1078_RS04840 0.14 +1.3 217,619 - HMPREF1078_RS04840 0.14 -0.0 217,655 + HMPREF1078_RS04840 0.15 -0.9 217,656 - HMPREF1078_RS04840 0.15 -3.4 217,656 - HMPREF1078_RS04840 0.15 -3.5 217,656 - HMPREF1078_RS04840 0.15 -1.3 217,697 + HMPREF1078_RS04840 0.17 -0.3 217,698 - HMPREF1078_RS04840 0.17 -2.7 217,771 + HMPREF1078_RS04840 0.19 -2.5 217,771 + HMPREF1078_RS04840 0.19 -1.9 217,771 + HMPREF1078_RS04840 0.19 -0.7 217,772 - HMPREF1078_RS04840 0.19 -2.4 217,772 - HMPREF1078_RS04840 0.19 -2.6 217,774 - HMPREF1078_RS04840 0.19 -0.7 217,799 + HMPREF1078_RS04840 0.20 -0.7 217,877 + HMPREF1078_RS04840 0.22 -2.3 217,889 - HMPREF1078_RS04840 0.22 -2.9 218,002 + HMPREF1078_RS04840 0.26 -2.6 218,034 + HMPREF1078_RS04840 0.27 -1.8 218,094 + HMPREF1078_RS04840 0.28 -1.4 218,095 - HMPREF1078_RS04840 0.28 -0.3 218,096 + HMPREF1078_RS04840 0.28 -1.8 218,096 + HMPREF1078_RS04840 0.28 -2.9 218,097 - HMPREF1078_RS04840 0.29 -2.0 218,113 - HMPREF1078_RS04840 0.29 -2.5 218,113 - HMPREF1078_RS04840 0.29 -1.9
Or see this region's nucleotide sequence