Experiment: GAM 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14510 and HMPREF1078_RS14515 are separated by 2 nucleotides HMPREF1078_RS14515 and HMPREF1078_RS14520 overlap by 1 nucleotides HMPREF1078_RS14520 and HMPREF1078_RS14525 are separated by 97 nucleotides
HMPREF1078_RS14510: HMPREF1078_RS14510 - tetratricopeptide repeat protein, at 400,362 to 401,726
_RS14510
HMPREF1078_RS14515: HMPREF1078_RS14515 - LPS export ABC transporter periplasmic protein LptC, at 401,729 to 402,469
_RS14515
HMPREF1078_RS14520: HMPREF1078_RS14520 - hemolysin family protein, at 402,469 to 403,725
_RS14520
HMPREF1078_RS14525: HMPREF1078_RS14525 - SurA N-terminal domain-containing protein, at 403,823 to 405,961
_RS14525
Position (kb) 402
403
404 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 402.295 kb on - strand, within HMPREF1078_RS14515 at 402.337 kb on + strand, within HMPREF1078_RS14515 at 402.338 kb on - strand, within HMPREF1078_RS14515 at 402.355 kb on + strand, within HMPREF1078_RS14515 at 402.355 kb on + strand, within HMPREF1078_RS14515 at 402.355 kb on + strand, within HMPREF1078_RS14515 at 402.356 kb on - strand, within HMPREF1078_RS14515 at 402.356 kb on - strand, within HMPREF1078_RS14515 at 402.356 kb on - strand, within HMPREF1078_RS14515 at 402.364 kb on - strand, within HMPREF1078_RS14515 at 402.467 kb on + strand at 402.467 kb on + strand at 402.467 kb on + strand at 402.467 kb on + strand at 402.480 kb on + strand at 402.480 kb on + strand at 402.481 kb on - strand at 402.481 kb on - strand at 402.481 kb on - strand at 402.484 kb on + strand at 402.484 kb on + strand at 402.484 kb on + strand at 402.484 kb on + strand at 402.484 kb on + strand at 402.484 kb on + strand at 402.484 kb on + strand at 402.484 kb on + strand at 402.484 kb on + strand at 402.484 kb on + strand at 402.485 kb on - strand at 402.485 kb on - strand at 402.485 kb on - strand at 402.485 kb on - strand at 402.485 kb on - strand at 402.485 kb on - strand at 402.485 kb on - strand at 402.488 kb on + strand at 402.489 kb on - strand at 402.489 kb on - strand at 402.489 kb on - strand at 402.489 kb on - strand at 402.489 kb on - strand at 402.489 kb on - strand at 402.491 kb on + strand at 402.491 kb on + strand at 402.492 kb on - strand at 402.492 kb on - strand at 402.492 kb on - strand at 402.495 kb on - strand at 402.495 kb on - strand at 402.540 kb on + strand at 402.541 kb on - strand at 402.541 kb on - strand at 402.541 kb on - strand at 402.552 kb on + strand at 402.553 kb on - strand at 402.553 kb on - strand at 402.553 kb on - strand at 402.557 kb on + strand at 402.557 kb on + strand at 402.611 kb on + strand, within HMPREF1078_RS14520 at 402.636 kb on + strand, within HMPREF1078_RS14520 at 402.636 kb on + strand, within HMPREF1078_RS14520 at 402.637 kb on - strand, within HMPREF1078_RS14520 at 402.637 kb on - strand, within HMPREF1078_RS14520 at 402.638 kb on + strand, within HMPREF1078_RS14520 at 402.638 kb on + strand, within HMPREF1078_RS14520 at 402.639 kb on - strand, within HMPREF1078_RS14520 at 402.642 kb on + strand, within HMPREF1078_RS14520 at 402.642 kb on + strand, within HMPREF1078_RS14520 at 402.642 kb on + strand, within HMPREF1078_RS14520 at 402.642 kb on + strand, within HMPREF1078_RS14520 at 402.643 kb on - strand, within HMPREF1078_RS14520 at 402.643 kb on - strand, within HMPREF1078_RS14520 at 402.663 kb on + strand, within HMPREF1078_RS14520 at 402.663 kb on + strand, within HMPREF1078_RS14520 at 402.664 kb on - strand, within HMPREF1078_RS14520 at 402.679 kb on + strand, within HMPREF1078_RS14520 at 402.700 kb on - strand, within HMPREF1078_RS14520 at 402.701 kb on + strand, within HMPREF1078_RS14520 at 402.732 kb on + strand, within HMPREF1078_RS14520 at 402.733 kb on - strand, within HMPREF1078_RS14520 at 402.762 kb on + strand, within HMPREF1078_RS14520 at 402.763 kb on - strand, within HMPREF1078_RS14520 at 402.843 kb on + strand, within HMPREF1078_RS14520 at 402.843 kb on + strand, within HMPREF1078_RS14520 at 402.843 kb on + strand, within HMPREF1078_RS14520 at 402.844 kb on - strand, within HMPREF1078_RS14520 at 402.844 kb on - strand, within HMPREF1078_RS14520 at 402.867 kb on - strand, within HMPREF1078_RS14520 at 402.872 kb on + strand, within HMPREF1078_RS14520 at 402.872 kb on + strand, within HMPREF1078_RS14520 at 402.872 kb on + strand, within HMPREF1078_RS14520 at 402.872 kb on + strand, within HMPREF1078_RS14520 at 402.872 kb on + strand, within HMPREF1078_RS14520 at 402.872 kb on + strand, within HMPREF1078_RS14520 at 402.872 kb on + strand, within HMPREF1078_RS14520 at 402.872 kb on + strand, within HMPREF1078_RS14520 at 402.873 kb on - strand, within HMPREF1078_RS14520 at 402.873 kb on - strand, within HMPREF1078_RS14520 at 402.874 kb on + strand, within HMPREF1078_RS14520 at 402.874 kb on + strand, within HMPREF1078_RS14520 at 402.874 kb on + strand, within HMPREF1078_RS14520 at 402.874 kb on + strand, within HMPREF1078_RS14520 at 402.874 kb on + strand, within HMPREF1078_RS14520 at 402.875 kb on - strand, within HMPREF1078_RS14520 at 402.875 kb on - strand, within HMPREF1078_RS14520 at 402.875 kb on - strand, within HMPREF1078_RS14520 at 402.875 kb on - strand, within HMPREF1078_RS14520 at 402.944 kb on + strand, within HMPREF1078_RS14520 at 402.997 kb on + strand, within HMPREF1078_RS14520 at 402.997 kb on + strand, within HMPREF1078_RS14520 at 403.055 kb on + strand, within HMPREF1078_RS14520 at 403.163 kb on + strand, within HMPREF1078_RS14520 at 403.207 kb on + strand, within HMPREF1078_RS14520 at 403.208 kb on - strand, within HMPREF1078_RS14520 at 403.209 kb on + strand, within HMPREF1078_RS14520 at 403.218 kb on + strand, within HMPREF1078_RS14520 at 403.227 kb on + strand, within HMPREF1078_RS14520 at 403.227 kb on + strand, within HMPREF1078_RS14520 at 403.227 kb on + strand, within HMPREF1078_RS14520 at 403.228 kb on - strand, within HMPREF1078_RS14520 at 403.228 kb on - strand, within HMPREF1078_RS14520 at 403.237 kb on + strand, within HMPREF1078_RS14520 at 403.239 kb on + strand, within HMPREF1078_RS14520 at 403.239 kb on + strand, within HMPREF1078_RS14520 at 403.239 kb on + strand, within HMPREF1078_RS14520 at 403.239 kb on + strand, within HMPREF1078_RS14520 at 403.239 kb on + strand, within HMPREF1078_RS14520 at 403.239 kb on + strand, within HMPREF1078_RS14520 at 403.239 kb on + strand, within HMPREF1078_RS14520 at 403.239 kb on + strand, within HMPREF1078_RS14520 at 403.329 kb on + strand, within HMPREF1078_RS14520 at 403.365 kb on + strand, within HMPREF1078_RS14520 at 403.366 kb on - strand, within HMPREF1078_RS14520 at 403.436 kb on + strand, within HMPREF1078_RS14520 at 403.474 kb on + strand, within HMPREF1078_RS14520 at 403.474 kb on + strand, within HMPREF1078_RS14520 at 403.475 kb on - strand, within HMPREF1078_RS14520 at 403.475 kb on - strand, within HMPREF1078_RS14520 at 403.504 kb on + strand, within HMPREF1078_RS14520 at 403.504 kb on + strand, within HMPREF1078_RS14520 at 403.505 kb on - strand, within HMPREF1078_RS14520 at 403.505 kb on - strand, within HMPREF1078_RS14520 at 403.508 kb on + strand, within HMPREF1078_RS14520 at 403.509 kb on - strand, within HMPREF1078_RS14520 at 403.509 kb on - strand, within HMPREF1078_RS14520 at 403.522 kb on - strand, within HMPREF1078_RS14520 at 403.579 kb on + strand, within HMPREF1078_RS14520 at 403.589 kb on + strand, within HMPREF1078_RS14520 at 403.590 kb on - strand, within HMPREF1078_RS14520 at 403.599 kb on + strand, within HMPREF1078_RS14520 at 403.599 kb on + strand, within HMPREF1078_RS14520 at 403.601 kb on + strand at 403.601 kb on + strand at 403.687 kb on - strand at 403.700 kb on + strand at 403.701 kb on - strand at 403.724 kb on - strand at 403.820 kb on + strand at 403.820 kb on + strand at 403.931 kb on + strand at 403.978 kb on + strand at 403.979 kb on - strand at 403.981 kb on + strand at 404.027 kb on + strand at 404.027 kb on + strand at 404.091 kb on + strand, within HMPREF1078_RS14525 at 404.101 kb on + strand, within HMPREF1078_RS14525 at 404.285 kb on - strand, within HMPREF1078_RS14525 at 404.309 kb on + strand, within HMPREF1078_RS14525 at 404.401 kb on + strand, within HMPREF1078_RS14525 at 404.420 kb on - strand, within HMPREF1078_RS14525 at 404.475 kb on + strand, within HMPREF1078_RS14525 at 404.492 kb on + strand, within HMPREF1078_RS14525 at 404.515 kb on + strand, within HMPREF1078_RS14525 at 404.530 kb on + strand, within HMPREF1078_RS14525 at 404.530 kb on + strand, within HMPREF1078_RS14525 at 404.530 kb on + strand, within HMPREF1078_RS14525 at 404.531 kb on - strand, within HMPREF1078_RS14525 at 404.533 kb on - strand, within HMPREF1078_RS14525 at 404.538 kb on + strand, within HMPREF1078_RS14525 at 404.538 kb on + strand, within HMPREF1078_RS14525 at 404.539 kb on - strand, within HMPREF1078_RS14525 at 404.615 kb on + strand, within HMPREF1078_RS14525 at 404.615 kb on + strand, within HMPREF1078_RS14525 at 404.615 kb on + strand, within HMPREF1078_RS14525 at 404.616 kb on - strand, within HMPREF1078_RS14525 at 404.616 kb on - strand, within HMPREF1078_RS14525 at 404.698 kb on + strand, within HMPREF1078_RS14525
Per-strain Table
Position Strand Gene LocusTag Fraction GAM 1 x (C) remove 402,295 - HMPREF1078_RS14515 0.76 +2.9 402,337 + HMPREF1078_RS14515 0.82 +0.4 402,338 - HMPREF1078_RS14515 0.82 +1.1 402,355 + HMPREF1078_RS14515 0.84 -1.0 402,355 + HMPREF1078_RS14515 0.84 -0.2 402,355 + HMPREF1078_RS14515 0.84 +0.2 402,356 - HMPREF1078_RS14515 0.85 -0.3 402,356 - HMPREF1078_RS14515 0.85 -0.1 402,356 - HMPREF1078_RS14515 0.85 +0.9 402,364 - HMPREF1078_RS14515 0.86 +0.7 402,467 + +0.0 402,467 + -0.1 402,467 + +0.6 402,467 + -1.1 402,480 + +0.4 402,480 + +1.2 402,481 - +0.1 402,481 - +0.5 402,481 - -0.5 402,484 + +1.3 402,484 + +0.5 402,484 + -0.2 402,484 + -0.9 402,484 + +0.0 402,484 + +0.5 402,484 + -1.1 402,484 + -1.0 402,484 + +0.9 402,484 + +0.4 402,485 - +0.7 402,485 - +0.4 402,485 - +1.2 402,485 - +1.5 402,485 - +0.3 402,485 - +1.9 402,485 - -1.7 402,488 + +0.6 402,489 - +0.2 402,489 - -0.0 402,489 - +0.8 402,489 - +0.4 402,489 - +1.2 402,489 - -0.8 402,491 + -1.0 402,491 + -0.0 402,492 - +0.5 402,492 - +0.4 402,492 - +1.5 402,495 - +1.0 402,495 - -1.3 402,540 + -0.3 402,541 - -1.7 402,541 - -1.1 402,541 - +0.5 402,552 + +0.7 402,553 - +0.9 402,553 - -0.8 402,553 - +0.8 402,557 + -0.6 402,557 + +0.8 402,611 + HMPREF1078_RS14520 0.11 +0.4 402,636 + HMPREF1078_RS14520 0.13 -1.9 402,636 + HMPREF1078_RS14520 0.13 +0.6 402,637 - HMPREF1078_RS14520 0.13 +1.1 402,637 - HMPREF1078_RS14520 0.13 +0.4 402,638 + HMPREF1078_RS14520 0.13 +0.5 402,638 + HMPREF1078_RS14520 0.13 +0.9 402,639 - HMPREF1078_RS14520 0.14 -1.4 402,642 + HMPREF1078_RS14520 0.14 +0.7 402,642 + HMPREF1078_RS14520 0.14 -1.6 402,642 + HMPREF1078_RS14520 0.14 +0.4 402,642 + HMPREF1078_RS14520 0.14 +1.2 402,643 - HMPREF1078_RS14520 0.14 +1.4 402,643 - HMPREF1078_RS14520 0.14 +0.5 402,663 + HMPREF1078_RS14520 0.15 -1.0 402,663 + HMPREF1078_RS14520 0.15 -0.6 402,664 - HMPREF1078_RS14520 0.16 +0.5 402,679 + HMPREF1078_RS14520 0.17 -0.6 402,700 - HMPREF1078_RS14520 0.18 -0.8 402,701 + HMPREF1078_RS14520 0.18 +0.8 402,732 + HMPREF1078_RS14520 0.21 -1.2 402,733 - HMPREF1078_RS14520 0.21 -0.2 402,762 + HMPREF1078_RS14520 0.23 -0.5 402,763 - HMPREF1078_RS14520 0.23 +0.2 402,843 + HMPREF1078_RS14520 0.30 -0.1 402,843 + HMPREF1078_RS14520 0.30 +1.2 402,843 + HMPREF1078_RS14520 0.30 +0.1 402,844 - HMPREF1078_RS14520 0.30 +0.6 402,844 - HMPREF1078_RS14520 0.30 -1.0 402,867 - HMPREF1078_RS14520 0.32 +0.3 402,872 + HMPREF1078_RS14520 0.32 -0.0 402,872 + HMPREF1078_RS14520 0.32 +0.4 402,872 + HMPREF1078_RS14520 0.32 -0.5 402,872 + HMPREF1078_RS14520 0.32 -1.3 402,872 + HMPREF1078_RS14520 0.32 +0.6 402,872 + HMPREF1078_RS14520 0.32 +0.5 402,872 + HMPREF1078_RS14520 0.32 +1.2 402,872 + HMPREF1078_RS14520 0.32 -0.6 402,873 - HMPREF1078_RS14520 0.32 -1.6 402,873 - HMPREF1078_RS14520 0.32 +0.5 402,874 + HMPREF1078_RS14520 0.32 -0.5 402,874 + HMPREF1078_RS14520 0.32 +0.6 402,874 + HMPREF1078_RS14520 0.32 +0.0 402,874 + HMPREF1078_RS14520 0.32 +1.4 402,874 + HMPREF1078_RS14520 0.32 -0.3 402,875 - HMPREF1078_RS14520 0.32 -1.1 402,875 - HMPREF1078_RS14520 0.32 +0.6 402,875 - HMPREF1078_RS14520 0.32 +0.2 402,875 - HMPREF1078_RS14520 0.32 +1.0 402,944 + HMPREF1078_RS14520 0.38 -0.8 402,997 + HMPREF1078_RS14520 0.42 -1.6 402,997 + HMPREF1078_RS14520 0.42 +0.4 403,055 + HMPREF1078_RS14520 0.47 +0.8 403,163 + HMPREF1078_RS14520 0.55 +1.1 403,207 + HMPREF1078_RS14520 0.59 +0.5 403,208 - HMPREF1078_RS14520 0.59 -0.6 403,209 + HMPREF1078_RS14520 0.59 +0.9 403,218 + HMPREF1078_RS14520 0.60 +1.9 403,227 + HMPREF1078_RS14520 0.60 -0.5 403,227 + HMPREF1078_RS14520 0.60 +0.4 403,227 + HMPREF1078_RS14520 0.60 -0.8 403,228 - HMPREF1078_RS14520 0.60 +1.1 403,228 - HMPREF1078_RS14520 0.60 -1.0 403,237 + HMPREF1078_RS14520 0.61 -0.7 403,239 + HMPREF1078_RS14520 0.61 +1.0 403,239 + HMPREF1078_RS14520 0.61 +0.6 403,239 + HMPREF1078_RS14520 0.61 -0.2 403,239 + HMPREF1078_RS14520 0.61 -0.2 403,239 + HMPREF1078_RS14520 0.61 -3.0 403,239 + HMPREF1078_RS14520 0.61 -0.0 403,239 + HMPREF1078_RS14520 0.61 -1.5 403,239 + HMPREF1078_RS14520 0.61 +0.6 403,329 + HMPREF1078_RS14520 0.68 +0.4 403,365 + HMPREF1078_RS14520 0.71 +0.8 403,366 - HMPREF1078_RS14520 0.71 +0.1 403,436 + HMPREF1078_RS14520 0.77 -0.1 403,474 + HMPREF1078_RS14520 0.80 -1.5 403,474 + HMPREF1078_RS14520 0.80 +0.5 403,475 - HMPREF1078_RS14520 0.80 +0.1 403,475 - HMPREF1078_RS14520 0.80 +0.7 403,504 + HMPREF1078_RS14520 0.82 -1.2 403,504 + HMPREF1078_RS14520 0.82 +0.4 403,505 - HMPREF1078_RS14520 0.82 +1.0 403,505 - HMPREF1078_RS14520 0.82 -1.1 403,508 + HMPREF1078_RS14520 0.83 +0.3 403,509 - HMPREF1078_RS14520 0.83 +0.6 403,509 - HMPREF1078_RS14520 0.83 +0.8 403,522 - HMPREF1078_RS14520 0.84 -0.6 403,579 + HMPREF1078_RS14520 0.88 +0.7 403,589 + HMPREF1078_RS14520 0.89 -1.3 403,590 - HMPREF1078_RS14520 0.89 +0.4 403,599 + HMPREF1078_RS14520 0.90 +0.2 403,599 + HMPREF1078_RS14520 0.90 +0.6 403,601 + +1.4 403,601 + +1.5 403,687 - -0.8 403,700 + -0.4 403,701 - -1.7 403,724 - +2.1 403,820 + +0.4 403,820 + -1.0 403,931 + -0.5 403,978 + +0.4 403,979 - -0.5 403,981 + +0.4 404,027 + +0.4 404,027 + -0.5 404,091 + HMPREF1078_RS14525 0.13 +0.4 404,101 + HMPREF1078_RS14525 0.13 +0.4 404,285 - HMPREF1078_RS14525 0.22 -0.6 404,309 + HMPREF1078_RS14525 0.23 +0.0 404,401 + HMPREF1078_RS14525 0.27 -0.2 404,420 - HMPREF1078_RS14525 0.28 -0.5 404,475 + HMPREF1078_RS14525 0.30 -0.2 404,492 + HMPREF1078_RS14525 0.31 +0.4 404,515 + HMPREF1078_RS14525 0.32 -1.0 404,530 + HMPREF1078_RS14525 0.33 +0.4 404,530 + HMPREF1078_RS14525 0.33 +0.4 404,530 + HMPREF1078_RS14525 0.33 -0.6 404,531 - HMPREF1078_RS14525 0.33 +0.4 404,533 - HMPREF1078_RS14525 0.33 -0.5 404,538 + HMPREF1078_RS14525 0.33 +0.4 404,538 + HMPREF1078_RS14525 0.33 -0.2 404,539 - HMPREF1078_RS14525 0.33 -0.2 404,615 + HMPREF1078_RS14525 0.37 -0.2 404,615 + HMPREF1078_RS14525 0.37 -1.1 404,615 + HMPREF1078_RS14525 0.37 +0.0 404,616 - HMPREF1078_RS14525 0.37 +0.4 404,616 - HMPREF1078_RS14525 0.37 +0.4 404,698 + HMPREF1078_RS14525 0.41 -0.6
Or see this region's nucleotide sequence