Experiment: GAM 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS12435 and HMPREF1078_RS12440 are separated by 497 nucleotides HMPREF1078_RS12440 and HMPREF1078_RS12445 are separated by 76 nucleotides
HMPREF1078_RS12435: HMPREF1078_RS12435 - efflux RND transporter permease subunit, at 481,589 to 484,855
_RS12435
HMPREF1078_RS12440: HMPREF1078_RS12440 - O-antigen ligase family protein, at 485,353 to 487,011
_RS12440
HMPREF1078_RS12445: HMPREF1078_RS12445 - heparinase II/III family protein, at 487,088 to 488,917
_RS12445
Position (kb) 485
486
487
488 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 484.409 kb on - strand, within HMPREF1078_RS12435 at 484.409 kb on - strand, within HMPREF1078_RS12435 at 484.463 kb on - strand, within HMPREF1078_RS12435 at 484.470 kb on + strand, within HMPREF1078_RS12435 at 484.473 kb on + strand, within HMPREF1078_RS12435 at 484.473 kb on + strand, within HMPREF1078_RS12435 at 484.474 kb on - strand, within HMPREF1078_RS12435 at 484.484 kb on + strand, within HMPREF1078_RS12435 at 484.589 kb on + strand at 484.605 kb on - strand at 484.652 kb on + strand at 484.673 kb on - strand at 484.713 kb on + strand at 484.735 kb on - strand at 484.807 kb on - strand at 484.820 kb on + strand at 484.821 kb on - strand at 484.821 kb on - strand at 484.821 kb on - strand at 484.825 kb on - strand at 484.878 kb on - strand at 484.927 kb on - strand at 484.967 kb on - strand at 484.977 kb on - strand at 484.996 kb on - strand at 485.064 kb on - strand at 485.064 kb on - strand at 485.064 kb on - strand at 485.064 kb on - strand at 485.114 kb on - strand at 485.114 kb on - strand at 485.185 kb on - strand at 485.185 kb on - strand at 485.199 kb on + strand at 485.203 kb on + strand at 485.204 kb on - strand at 485.240 kb on + strand at 485.241 kb on - strand at 485.241 kb on - strand at 485.241 kb on - strand at 485.250 kb on + strand at 485.327 kb on + strand at 485.348 kb on + strand at 485.349 kb on - strand at 485.406 kb on - strand at 485.408 kb on + strand at 485.411 kb on + strand at 485.570 kb on + strand, within HMPREF1078_RS12440 at 485.610 kb on + strand, within HMPREF1078_RS12440 at 485.689 kb on + strand, within HMPREF1078_RS12440 at 485.689 kb on + strand, within HMPREF1078_RS12440 at 485.690 kb on - strand, within HMPREF1078_RS12440 at 485.691 kb on + strand, within HMPREF1078_RS12440 at 485.726 kb on + strand, within HMPREF1078_RS12440 at 485.726 kb on + strand, within HMPREF1078_RS12440 at 485.786 kb on - strand, within HMPREF1078_RS12440 at 485.806 kb on - strand, within HMPREF1078_RS12440 at 485.825 kb on + strand, within HMPREF1078_RS12440 at 485.927 kb on + strand, within HMPREF1078_RS12440 at 485.927 kb on + strand, within HMPREF1078_RS12440 at 485.952 kb on + strand, within HMPREF1078_RS12440 at 486.066 kb on + strand, within HMPREF1078_RS12440 at 486.096 kb on + strand, within HMPREF1078_RS12440 at 486.096 kb on + strand, within HMPREF1078_RS12440 at 486.097 kb on - strand, within HMPREF1078_RS12440 at 486.118 kb on + strand, within HMPREF1078_RS12440 at 486.119 kb on - strand, within HMPREF1078_RS12440 at 486.197 kb on - strand, within HMPREF1078_RS12440 at 486.211 kb on + strand, within HMPREF1078_RS12440 at 486.352 kb on + strand, within HMPREF1078_RS12440 at 486.352 kb on + strand, within HMPREF1078_RS12440 at 486.408 kb on + strand, within HMPREF1078_RS12440 at 486.408 kb on + strand, within HMPREF1078_RS12440 at 486.408 kb on + strand, within HMPREF1078_RS12440 at 486.408 kb on + strand, within HMPREF1078_RS12440 at 486.409 kb on - strand, within HMPREF1078_RS12440 at 486.410 kb on + strand, within HMPREF1078_RS12440 at 486.410 kb on + strand, within HMPREF1078_RS12440 at 486.410 kb on + strand, within HMPREF1078_RS12440 at 486.410 kb on + strand, within HMPREF1078_RS12440 at 486.410 kb on + strand, within HMPREF1078_RS12440 at 486.410 kb on + strand, within HMPREF1078_RS12440 at 486.410 kb on + strand, within HMPREF1078_RS12440 at 486.411 kb on - strand, within HMPREF1078_RS12440 at 486.411 kb on - strand, within HMPREF1078_RS12440 at 486.411 kb on - strand, within HMPREF1078_RS12440 at 486.411 kb on - strand, within HMPREF1078_RS12440 at 486.432 kb on + strand, within HMPREF1078_RS12440 at 486.464 kb on - strand, within HMPREF1078_RS12440 at 486.466 kb on - strand, within HMPREF1078_RS12440 at 486.489 kb on + strand, within HMPREF1078_RS12440 at 486.490 kb on - strand, within HMPREF1078_RS12440 at 486.490 kb on - strand, within HMPREF1078_RS12440 at 486.505 kb on + strand, within HMPREF1078_RS12440 at 486.523 kb on + strand, within HMPREF1078_RS12440 at 486.523 kb on + strand, within HMPREF1078_RS12440 at 486.523 kb on + strand, within HMPREF1078_RS12440 at 486.523 kb on + strand, within HMPREF1078_RS12440 at 486.524 kb on - strand, within HMPREF1078_RS12440 at 486.524 kb on - strand, within HMPREF1078_RS12440 at 486.524 kb on - strand, within HMPREF1078_RS12440 at 486.526 kb on + strand, within HMPREF1078_RS12440 at 486.528 kb on + strand, within HMPREF1078_RS12440 at 486.528 kb on + strand, within HMPREF1078_RS12440 at 486.528 kb on + strand, within HMPREF1078_RS12440 at 486.529 kb on - strand, within HMPREF1078_RS12440 at 486.532 kb on + strand, within HMPREF1078_RS12440 at 486.532 kb on + strand, within HMPREF1078_RS12440 at 486.535 kb on - strand, within HMPREF1078_RS12440 at 486.560 kb on + strand, within HMPREF1078_RS12440 at 486.561 kb on - strand, within HMPREF1078_RS12440 at 486.563 kb on - strand, within HMPREF1078_RS12440 at 486.568 kb on - strand, within HMPREF1078_RS12440 at 486.578 kb on - strand, within HMPREF1078_RS12440 at 486.641 kb on + strand, within HMPREF1078_RS12440 at 486.642 kb on - strand, within HMPREF1078_RS12440 at 486.643 kb on + strand, within HMPREF1078_RS12440 at 486.667 kb on - strand, within HMPREF1078_RS12440 at 486.714 kb on - strand, within HMPREF1078_RS12440 at 486.737 kb on + strand, within HMPREF1078_RS12440 at 486.738 kb on - strand, within HMPREF1078_RS12440 at 486.738 kb on - strand, within HMPREF1078_RS12440 at 486.739 kb on + strand, within HMPREF1078_RS12440 at 486.739 kb on + strand, within HMPREF1078_RS12440 at 486.740 kb on - strand, within HMPREF1078_RS12440 at 486.740 kb on - strand, within HMPREF1078_RS12440 at 486.740 kb on - strand, within HMPREF1078_RS12440 at 486.742 kb on + strand, within HMPREF1078_RS12440 at 486.743 kb on - strand, within HMPREF1078_RS12440 at 486.797 kb on - strand, within HMPREF1078_RS12440 at 486.835 kb on + strand, within HMPREF1078_RS12440 at 486.835 kb on + strand, within HMPREF1078_RS12440 at 486.835 kb on + strand, within HMPREF1078_RS12440 at 486.836 kb on - strand, within HMPREF1078_RS12440 at 486.837 kb on + strand, within HMPREF1078_RS12440 at 486.837 kb on + strand, within HMPREF1078_RS12440 at 486.837 kb on + strand, within HMPREF1078_RS12440 at 486.837 kb on + strand, within HMPREF1078_RS12440 at 486.837 kb on + strand, within HMPREF1078_RS12440 at 486.838 kb on - strand, within HMPREF1078_RS12440 at 486.838 kb on - strand, within HMPREF1078_RS12440 at 486.838 kb on - strand, within HMPREF1078_RS12440 at 486.838 kb on - strand, within HMPREF1078_RS12440 at 486.841 kb on + strand, within HMPREF1078_RS12440 at 486.842 kb on - strand, within HMPREF1078_RS12440 at 486.849 kb on - strand at 486.862 kb on + strand at 486.862 kb on + strand at 486.862 kb on + strand at 486.965 kb on - strand at 487.030 kb on + strand at 487.076 kb on + strand at 487.082 kb on - strand at 487.086 kb on + strand at 487.087 kb on - strand at 487.089 kb on + strand at 487.191 kb on + strand at 487.191 kb on + strand at 487.192 kb on - strand at 487.192 kb on - strand at 487.192 kb on - strand at 487.196 kb on - strand at 487.309 kb on + strand, within HMPREF1078_RS12445 at 487.310 kb on - strand, within HMPREF1078_RS12445 at 487.439 kb on - strand, within HMPREF1078_RS12445 at 487.552 kb on + strand, within HMPREF1078_RS12445 at 487.567 kb on + strand, within HMPREF1078_RS12445 at 487.622 kb on + strand, within HMPREF1078_RS12445 at 487.623 kb on - strand, within HMPREF1078_RS12445 at 487.648 kb on - strand, within HMPREF1078_RS12445 at 487.803 kb on - strand, within HMPREF1078_RS12445 at 487.878 kb on + strand, within HMPREF1078_RS12445 at 487.879 kb on - strand, within HMPREF1078_RS12445 at 487.979 kb on + strand, within HMPREF1078_RS12445
Per-strain Table
Position Strand Gene LocusTag Fraction GAM 1 x (C) remove 484,409 - HMPREF1078_RS12435 0.86 -0.2 484,409 - HMPREF1078_RS12435 0.86 +0.5 484,463 - HMPREF1078_RS12435 0.88 -0.8 484,470 + HMPREF1078_RS12435 0.88 -1.3 484,473 + HMPREF1078_RS12435 0.88 -0.2 484,473 + HMPREF1078_RS12435 0.88 -0.6 484,474 - HMPREF1078_RS12435 0.88 -2.3 484,484 + HMPREF1078_RS12435 0.89 -1.0 484,589 + -0.5 484,605 - -1.0 484,652 + -0.7 484,673 - -0.4 484,713 + +0.7 484,735 - +0.4 484,807 - +0.5 484,820 + -0.0 484,821 - +1.1 484,821 - -0.1 484,821 - -0.3 484,825 - +0.8 484,878 - +0.2 484,927 - -0.7 484,967 - -0.3 484,977 - -1.3 484,996 - -2.8 485,064 - +0.0 485,064 - -0.1 485,064 - +0.7 485,064 - -0.0 485,114 - -0.0 485,114 - +1.2 485,185 - +0.3 485,185 - -0.2 485,199 + +0.4 485,203 + +0.3 485,204 - -1.4 485,240 + +0.0 485,241 - -0.8 485,241 - +1.0 485,241 - +1.5 485,250 + -1.2 485,327 + -0.0 485,348 + -0.5 485,349 - -2.4 485,406 - +0.5 485,408 + -0.0 485,411 + +0.1 485,570 + HMPREF1078_RS12440 0.13 -0.1 485,610 + HMPREF1078_RS12440 0.15 +0.3 485,689 + HMPREF1078_RS12440 0.20 -1.5 485,689 + HMPREF1078_RS12440 0.20 +0.6 485,690 - HMPREF1078_RS12440 0.20 -0.5 485,691 + HMPREF1078_RS12440 0.20 +0.0 485,726 + HMPREF1078_RS12440 0.22 -0.2 485,726 + HMPREF1078_RS12440 0.22 -0.1 485,786 - HMPREF1078_RS12440 0.26 +0.3 485,806 - HMPREF1078_RS12440 0.27 +0.6 485,825 + HMPREF1078_RS12440 0.28 -0.0 485,927 + HMPREF1078_RS12440 0.35 -1.6 485,927 + HMPREF1078_RS12440 0.35 -0.8 485,952 + HMPREF1078_RS12440 0.36 -0.3 486,066 + HMPREF1078_RS12440 0.43 +0.6 486,096 + HMPREF1078_RS12440 0.45 -3.0 486,096 + HMPREF1078_RS12440 0.45 +1.0 486,097 - HMPREF1078_RS12440 0.45 -0.5 486,118 + HMPREF1078_RS12440 0.46 -0.3 486,119 - HMPREF1078_RS12440 0.46 -2.2 486,197 - HMPREF1078_RS12440 0.51 +0.9 486,211 + HMPREF1078_RS12440 0.52 +0.2 486,352 + HMPREF1078_RS12440 0.60 +0.3 486,352 + HMPREF1078_RS12440 0.60 +1.1 486,408 + HMPREF1078_RS12440 0.64 -0.1 486,408 + HMPREF1078_RS12440 0.64 -0.7 486,408 + HMPREF1078_RS12440 0.64 -1.5 486,408 + HMPREF1078_RS12440 0.64 -0.1 486,409 - HMPREF1078_RS12440 0.64 -0.4 486,410 + HMPREF1078_RS12440 0.64 +0.2 486,410 + HMPREF1078_RS12440 0.64 +0.9 486,410 + HMPREF1078_RS12440 0.64 +0.7 486,410 + HMPREF1078_RS12440 0.64 +0.7 486,410 + HMPREF1078_RS12440 0.64 +0.6 486,410 + HMPREF1078_RS12440 0.64 +0.1 486,410 + HMPREF1078_RS12440 0.64 +0.7 486,411 - HMPREF1078_RS12440 0.64 -0.4 486,411 - HMPREF1078_RS12440 0.64 -0.1 486,411 - HMPREF1078_RS12440 0.64 +0.0 486,411 - HMPREF1078_RS12440 0.64 +0.3 486,432 + HMPREF1078_RS12440 0.65 +1.5 486,464 - HMPREF1078_RS12440 0.67 +0.7 486,466 - HMPREF1078_RS12440 0.67 +0.4 486,489 + HMPREF1078_RS12440 0.68 -0.7 486,490 - HMPREF1078_RS12440 0.69 +0.3 486,490 - HMPREF1078_RS12440 0.69 -0.4 486,505 + HMPREF1078_RS12440 0.69 +2.0 486,523 + HMPREF1078_RS12440 0.71 +0.4 486,523 + HMPREF1078_RS12440 0.71 -1.0 486,523 + HMPREF1078_RS12440 0.71 +1.5 486,523 + HMPREF1078_RS12440 0.71 -0.8 486,524 - HMPREF1078_RS12440 0.71 -1.7 486,524 - HMPREF1078_RS12440 0.71 -0.5 486,524 - HMPREF1078_RS12440 0.71 -1.0 486,526 + HMPREF1078_RS12440 0.71 -0.8 486,528 + HMPREF1078_RS12440 0.71 +0.7 486,528 + HMPREF1078_RS12440 0.71 +0.7 486,528 + HMPREF1078_RS12440 0.71 -0.5 486,529 - HMPREF1078_RS12440 0.71 -0.7 486,532 + HMPREF1078_RS12440 0.71 -0.6 486,532 + HMPREF1078_RS12440 0.71 +0.4 486,535 - HMPREF1078_RS12440 0.71 -2.0 486,560 + HMPREF1078_RS12440 0.73 -0.9 486,561 - HMPREF1078_RS12440 0.73 -0.6 486,563 - HMPREF1078_RS12440 0.73 -0.1 486,568 - HMPREF1078_RS12440 0.73 -1.7 486,578 - HMPREF1078_RS12440 0.74 +0.3 486,641 + HMPREF1078_RS12440 0.78 +0.1 486,642 - HMPREF1078_RS12440 0.78 -1.8 486,643 + HMPREF1078_RS12440 0.78 -0.2 486,667 - HMPREF1078_RS12440 0.79 -0.1 486,714 - HMPREF1078_RS12440 0.82 -0.9 486,737 + HMPREF1078_RS12440 0.83 +1.0 486,738 - HMPREF1078_RS12440 0.83 +0.8 486,738 - HMPREF1078_RS12440 0.83 -0.9 486,739 + HMPREF1078_RS12440 0.84 -0.6 486,739 + HMPREF1078_RS12440 0.84 +0.3 486,740 - HMPREF1078_RS12440 0.84 +0.2 486,740 - HMPREF1078_RS12440 0.84 -0.4 486,740 - HMPREF1078_RS12440 0.84 -0.2 486,742 + HMPREF1078_RS12440 0.84 -0.2 486,743 - HMPREF1078_RS12440 0.84 +0.4 486,797 - HMPREF1078_RS12440 0.87 +1.1 486,835 + HMPREF1078_RS12440 0.89 +0.3 486,835 + HMPREF1078_RS12440 0.89 -0.9 486,835 + HMPREF1078_RS12440 0.89 -0.1 486,836 - HMPREF1078_RS12440 0.89 -0.3 486,837 + HMPREF1078_RS12440 0.89 +1.1 486,837 + HMPREF1078_RS12440 0.89 -1.5 486,837 + HMPREF1078_RS12440 0.89 +0.3 486,837 + HMPREF1078_RS12440 0.89 -0.7 486,837 + HMPREF1078_RS12440 0.89 -0.6 486,838 - HMPREF1078_RS12440 0.90 -0.6 486,838 - HMPREF1078_RS12440 0.90 -0.0 486,838 - HMPREF1078_RS12440 0.90 -1.1 486,838 - HMPREF1078_RS12440 0.90 -1.2 486,841 + HMPREF1078_RS12440 0.90 +0.1 486,842 - HMPREF1078_RS12440 0.90 -0.9 486,849 - -1.2 486,862 + -0.5 486,862 + +0.3 486,862 + +0.3 486,965 - +0.3 487,030 + -1.1 487,076 + -0.9 487,082 - +0.3 487,086 + +0.3 487,087 - +1.2 487,089 + -0.4 487,191 + -0.2 487,191 + -0.3 487,192 - +0.5 487,192 - +0.4 487,192 - -0.3 487,196 - -0.1 487,309 + HMPREF1078_RS12445 0.12 +0.7 487,310 - HMPREF1078_RS12445 0.12 -0.9 487,439 - HMPREF1078_RS12445 0.19 -0.1 487,552 + HMPREF1078_RS12445 0.25 +0.4 487,567 + HMPREF1078_RS12445 0.26 +0.5 487,622 + HMPREF1078_RS12445 0.29 -1.1 487,623 - HMPREF1078_RS12445 0.29 +0.7 487,648 - HMPREF1078_RS12445 0.31 +0.5 487,803 - HMPREF1078_RS12445 0.39 -0.3 487,878 + HMPREF1078_RS12445 0.43 +0.2 487,879 - HMPREF1078_RS12445 0.43 -0.2 487,979 + HMPREF1078_RS12445 0.49 +0.8
Or see this region's nucleotide sequence