Experiment: GAM 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08030 and HMPREF1078_RS08035 are separated by 179 nucleotides HMPREF1078_RS08035 and HMPREF1078_RS08040 are separated by 268 nucleotides
HMPREF1078_RS08030: HMPREF1078_RS08030 - MATE family efflux transporter, at 167,919 to 169,262
_RS08030
HMPREF1078_RS08035: HMPREF1078_RS08035 - magnesium transporter CorA family protein, at 169,442 to 170,368
_RS08035
HMPREF1078_RS08040: HMPREF1078_RS08040 - winged helix DNA-binding domain-containing protein, at 170,637 to 171,707
_RS08040
Position (kb) 169
170
171 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 168.545 kb on + strand, within HMPREF1078_RS08030 at 168.555 kb on + strand, within HMPREF1078_RS08030 at 168.557 kb on + strand, within HMPREF1078_RS08030 at 168.557 kb on + strand, within HMPREF1078_RS08030 at 168.557 kb on + strand, within HMPREF1078_RS08030 at 168.557 kb on + strand, within HMPREF1078_RS08030 at 168.558 kb on - strand, within HMPREF1078_RS08030 at 168.558 kb on - strand, within HMPREF1078_RS08030 at 168.558 kb on - strand, within HMPREF1078_RS08030 at 168.558 kb on - strand, within HMPREF1078_RS08030 at 168.581 kb on - strand, within HMPREF1078_RS08030 at 168.710 kb on + strand, within HMPREF1078_RS08030 at 168.773 kb on + strand, within HMPREF1078_RS08030 at 168.880 kb on + strand, within HMPREF1078_RS08030 at 168.944 kb on + strand, within HMPREF1078_RS08030 at 168.945 kb on - strand, within HMPREF1078_RS08030 at 169.048 kb on - strand, within HMPREF1078_RS08030 at 169.071 kb on - strand, within HMPREF1078_RS08030 at 169.113 kb on - strand, within HMPREF1078_RS08030 at 169.132 kb on - strand at 169.242 kb on + strand at 169.242 kb on + strand at 169.280 kb on + strand at 169.283 kb on - strand at 169.288 kb on + strand at 169.372 kb on - strand at 169.376 kb on - strand at 169.376 kb on - strand at 169.395 kb on + strand at 169.413 kb on + strand at 169.413 kb on + strand at 169.413 kb on + strand at 169.414 kb on - strand at 169.440 kb on + strand at 169.440 kb on + strand at 169.457 kb on + strand at 169.515 kb on + strand at 169.516 kb on - strand at 169.538 kb on - strand, within HMPREF1078_RS08035 at 169.622 kb on + strand, within HMPREF1078_RS08035 at 169.623 kb on - strand, within HMPREF1078_RS08035 at 169.711 kb on + strand, within HMPREF1078_RS08035 at 169.711 kb on + strand, within HMPREF1078_RS08035 at 169.734 kb on + strand, within HMPREF1078_RS08035 at 169.734 kb on + strand, within HMPREF1078_RS08035 at 169.734 kb on + strand, within HMPREF1078_RS08035 at 169.734 kb on + strand, within HMPREF1078_RS08035 at 169.734 kb on + strand, within HMPREF1078_RS08035 at 169.734 kb on + strand, within HMPREF1078_RS08035 at 169.734 kb on + strand, within HMPREF1078_RS08035 at 169.735 kb on - strand, within HMPREF1078_RS08035 at 169.735 kb on - strand, within HMPREF1078_RS08035 at 169.735 kb on - strand, within HMPREF1078_RS08035 at 169.749 kb on - strand, within HMPREF1078_RS08035 at 169.817 kb on + strand, within HMPREF1078_RS08035 at 169.817 kb on + strand, within HMPREF1078_RS08035 at 169.817 kb on + strand, within HMPREF1078_RS08035 at 169.999 kb on + strand, within HMPREF1078_RS08035 at 170.048 kb on + strand, within HMPREF1078_RS08035 at 170.051 kb on - strand, within HMPREF1078_RS08035 at 170.088 kb on + strand, within HMPREF1078_RS08035 at 170.088 kb on + strand, within HMPREF1078_RS08035 at 170.117 kb on + strand, within HMPREF1078_RS08035 at 170.117 kb on + strand, within HMPREF1078_RS08035 at 170.118 kb on - strand, within HMPREF1078_RS08035 at 170.118 kb on - strand, within HMPREF1078_RS08035 at 170.246 kb on + strand, within HMPREF1078_RS08035 at 170.246 kb on + strand, within HMPREF1078_RS08035 at 170.247 kb on - strand, within HMPREF1078_RS08035 at 170.247 kb on - strand, within HMPREF1078_RS08035 at 170.251 kb on + strand, within HMPREF1078_RS08035 at 170.268 kb on - strand, within HMPREF1078_RS08035 at 170.322 kb on + strand at 170.322 kb on + strand at 170.322 kb on + strand at 170.372 kb on - strand at 170.437 kb on - strand at 170.437 kb on - strand at 170.437 kb on - strand at 170.440 kb on + strand at 170.468 kb on + strand at 170.468 kb on + strand at 170.469 kb on - strand at 170.471 kb on + strand at 170.471 kb on + strand at 170.472 kb on - strand at 170.472 kb on - strand at 170.472 kb on - strand at 170.489 kb on - strand at 170.493 kb on - strand at 170.513 kb on + strand at 170.528 kb on - strand at 170.550 kb on + strand at 170.569 kb on + strand at 170.574 kb on - strand at 170.574 kb on - strand at 170.575 kb on + strand at 170.577 kb on - strand at 170.579 kb on + strand at 170.579 kb on - strand at 170.623 kb on + strand at 170.803 kb on + strand, within HMPREF1078_RS08040 at 170.804 kb on - strand, within HMPREF1078_RS08040 at 170.835 kb on - strand, within HMPREF1078_RS08040 at 170.835 kb on - strand, within HMPREF1078_RS08040 at 170.835 kb on - strand, within HMPREF1078_RS08040 at 170.887 kb on + strand, within HMPREF1078_RS08040 at 170.888 kb on - strand, within HMPREF1078_RS08040 at 170.888 kb on - strand, within HMPREF1078_RS08040 at 170.899 kb on + strand, within HMPREF1078_RS08040 at 170.900 kb on - strand, within HMPREF1078_RS08040 at 170.908 kb on + strand, within HMPREF1078_RS08040 at 170.909 kb on - strand, within HMPREF1078_RS08040 at 170.972 kb on - strand, within HMPREF1078_RS08040 at 171.081 kb on - strand, within HMPREF1078_RS08040 at 171.108 kb on + strand, within HMPREF1078_RS08040 at 171.184 kb on + strand, within HMPREF1078_RS08040 at 171.184 kb on + strand, within HMPREF1078_RS08040 at 171.185 kb on - strand, within HMPREF1078_RS08040 at 171.185 kb on - strand, within HMPREF1078_RS08040 at 171.185 kb on - strand, within HMPREF1078_RS08040 at 171.204 kb on - strand, within HMPREF1078_RS08040 at 171.204 kb on - strand, within HMPREF1078_RS08040 at 171.208 kb on - strand, within HMPREF1078_RS08040 at 171.253 kb on + strand, within HMPREF1078_RS08040 at 171.254 kb on - strand, within HMPREF1078_RS08040 at 171.259 kb on - strand, within HMPREF1078_RS08040 at 171.359 kb on + strand, within HMPREF1078_RS08040 at 171.360 kb on - strand, within HMPREF1078_RS08040
Per-strain Table
Position Strand Gene LocusTag Fraction GAM 1 x (C) remove 168,545 + HMPREF1078_RS08030 0.47 +1.8 168,555 + HMPREF1078_RS08030 0.47 +0.2 168,557 + HMPREF1078_RS08030 0.47 -0.4 168,557 + HMPREF1078_RS08030 0.47 -0.3 168,557 + HMPREF1078_RS08030 0.47 -0.9 168,557 + HMPREF1078_RS08030 0.47 -1.8 168,558 - HMPREF1078_RS08030 0.48 -0.2 168,558 - HMPREF1078_RS08030 0.48 -0.8 168,558 - HMPREF1078_RS08030 0.48 -0.5 168,558 - HMPREF1078_RS08030 0.48 -0.2 168,581 - HMPREF1078_RS08030 0.49 +0.5 168,710 + HMPREF1078_RS08030 0.59 +0.1 168,773 + HMPREF1078_RS08030 0.64 +1.3 168,880 + HMPREF1078_RS08030 0.72 -0.6 168,944 + HMPREF1078_RS08030 0.76 +1.9 168,945 - HMPREF1078_RS08030 0.76 -0.3 169,048 - HMPREF1078_RS08030 0.84 -0.5 169,071 - HMPREF1078_RS08030 0.86 +0.3 169,113 - HMPREF1078_RS08030 0.89 +1.6 169,132 - +0.6 169,242 + +2.6 169,242 + +3.0 169,280 + +2.9 169,283 - -1.5 169,288 + +3.0 169,372 - -2.6 169,376 - -2.4 169,376 - -3.2 169,395 + -3.3 169,413 + -3.5 169,413 + -2.4 169,413 + -4.9 169,414 - -1.4 169,440 + -2.0 169,440 + -3.9 169,457 + -3.9 169,515 + -2.4 169,516 - -4.3 169,538 - HMPREF1078_RS08035 0.10 -3.2 169,622 + HMPREF1078_RS08035 0.19 -0.4 169,623 - HMPREF1078_RS08035 0.20 -2.0 169,711 + HMPREF1078_RS08035 0.29 -4.0 169,711 + HMPREF1078_RS08035 0.29 -3.1 169,734 + HMPREF1078_RS08035 0.31 -1.0 169,734 + HMPREF1078_RS08035 0.31 -3.2 169,734 + HMPREF1078_RS08035 0.31 -3.7 169,734 + HMPREF1078_RS08035 0.31 -3.4 169,734 + HMPREF1078_RS08035 0.31 -3.5 169,734 + HMPREF1078_RS08035 0.31 -4.9 169,734 + HMPREF1078_RS08035 0.31 -3.1 169,735 - HMPREF1078_RS08035 0.32 -1.6 169,735 - HMPREF1078_RS08035 0.32 -3.6 169,735 - HMPREF1078_RS08035 0.32 -4.6 169,749 - HMPREF1078_RS08035 0.33 -4.4 169,817 + HMPREF1078_RS08035 0.40 -4.6 169,817 + HMPREF1078_RS08035 0.40 -4.1 169,817 + HMPREF1078_RS08035 0.40 -1.0 169,999 + HMPREF1078_RS08035 0.60 -0.6 170,048 + HMPREF1078_RS08035 0.65 -1.6 170,051 - HMPREF1078_RS08035 0.66 -3.4 170,088 + HMPREF1078_RS08035 0.70 -4.7 170,088 + HMPREF1078_RS08035 0.70 -2.9 170,117 + HMPREF1078_RS08035 0.73 -2.0 170,117 + HMPREF1078_RS08035 0.73 -3.8 170,118 - HMPREF1078_RS08035 0.73 -3.9 170,118 - HMPREF1078_RS08035 0.73 -4.4 170,246 + HMPREF1078_RS08035 0.87 -4.0 170,246 + HMPREF1078_RS08035 0.87 -2.4 170,247 - HMPREF1078_RS08035 0.87 -5.5 170,247 - HMPREF1078_RS08035 0.87 -0.6 170,251 + HMPREF1078_RS08035 0.87 -2.0 170,268 - HMPREF1078_RS08035 0.89 -2.5 170,322 + -2.6 170,322 + -3.1 170,322 + -4.5 170,372 - -1.5 170,437 - -0.4 170,437 - -0.2 170,437 - -0.9 170,440 + -1.8 170,468 + +0.8 170,468 + +0.3 170,469 - -2.9 170,471 + +0.7 170,471 + +0.3 170,472 - -1.1 170,472 - -0.8 170,472 - -2.9 170,489 - +0.2 170,493 - -1.1 170,513 + -0.6 170,528 - -1.2 170,550 + -0.3 170,569 + +0.6 170,574 - -0.1 170,574 - -1.4 170,575 + +0.2 170,577 - -1.5 170,579 + -0.1 170,579 - +0.1 170,623 + -0.1 170,803 + HMPREF1078_RS08040 0.15 +1.6 170,804 - HMPREF1078_RS08040 0.16 -1.5 170,835 - HMPREF1078_RS08040 0.18 -0.2 170,835 - HMPREF1078_RS08040 0.18 -0.4 170,835 - HMPREF1078_RS08040 0.18 +0.1 170,887 + HMPREF1078_RS08040 0.23 +1.2 170,888 - HMPREF1078_RS08040 0.23 +0.6 170,888 - HMPREF1078_RS08040 0.23 -0.8 170,899 + HMPREF1078_RS08040 0.24 +0.0 170,900 - HMPREF1078_RS08040 0.25 -2.9 170,908 + HMPREF1078_RS08040 0.25 -0.1 170,909 - HMPREF1078_RS08040 0.25 +0.9 170,972 - HMPREF1078_RS08040 0.31 +0.1 171,081 - HMPREF1078_RS08040 0.41 +0.0 171,108 + HMPREF1078_RS08040 0.44 +1.1 171,184 + HMPREF1078_RS08040 0.51 -1.0 171,184 + HMPREF1078_RS08040 0.51 +0.4 171,185 - HMPREF1078_RS08040 0.51 -1.6 171,185 - HMPREF1078_RS08040 0.51 +0.1 171,185 - HMPREF1078_RS08040 0.51 +0.3 171,204 - HMPREF1078_RS08040 0.53 +0.9 171,204 - HMPREF1078_RS08040 0.53 -1.1 171,208 - HMPREF1078_RS08040 0.53 +0.2 171,253 + HMPREF1078_RS08040 0.58 -0.5 171,254 - HMPREF1078_RS08040 0.58 -1.0 171,259 - HMPREF1078_RS08040 0.58 -0.1 171,359 + HMPREF1078_RS08040 0.67 -0.1 171,360 - HMPREF1078_RS08040 0.68 -2.7
Or see this region's nucleotide sequence