Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS07815

Experiment: GAM 1 x (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	GAM 1 x (C)
114,313	-		HMPREF1078_RS07810	0.74	-0.4
114,317	-		HMPREF1078_RS07810	0.74	-0.4
114,501	+		HMPREF1078_RS07810	0.84	-0.6
114,590	+		HMPREF1078_RS07810	0.89	-1.1
114,590	+		HMPREF1078_RS07810	0.89	+0.4
114,591	-		HMPREF1078_RS07810	0.89	+0.3
114,591	-		HMPREF1078_RS07810	0.89	+0.4
114,592	+		HMPREF1078_RS07810	0.89	-2.6
114,592	+		HMPREF1078_RS07810	0.89	-0.9
114,592	+		HMPREF1078_RS07810	0.89	-1.6
114,593	-		HMPREF1078_RS07810	0.89	+0.7
114,593	-		HMPREF1078_RS07810	0.89	+1.1
114,593	-		HMPREF1078_RS07810	0.89	-1.1
114,595	+		HMPREF1078_RS07810	0.90	-0.8
114,596	-		HMPREF1078_RS07810	0.90	+0.7
114,596	-		HMPREF1078_RS07810	0.90	-0.5
114,596	-		HMPREF1078_RS07810	0.90	-2.5
114,636	+				-1.4
114,650	+				-0.4
114,656	+				-1.3
114,657	-				+0.4
114,658	+				-1.2
114,659	-				-0.9
114,691	+				-0.9
114,693	+				-1.5
114,708	-				+0.5
114,708	-				-1.9
114,718	+				+0.2
114,741	+				-0.1
114,777	-				-0.1
114,823	-				-1.1
114,846	-				-1.2
114,871	+				+0.4
114,871	+				-1.0
114,884	+				+0.3
114,919	+				+0.6
114,919	+				-0.4
114,919	+				-0.9
114,920	-				-0.5
114,920	-				-0.5
114,921	+				+0.1
114,921	+				-3.2
114,921	+				-1.4
114,921	+				+0.5
114,921	+				+0.4
114,922	-				-0.8
114,922	-				+0.7
114,923	+				-0.9
114,923	+				-1.0
114,923	+				-0.8
114,923	+				-1.2
114,923	+				-0.1
114,924	-				-0.4
114,936	+				-0.4
114,937	-				+1.4
114,940	+				-0.5
114,941	-				+0.3
114,948	+				+0.1
114,957	+				-0.2
114,969	+				-0.8
114,976	-				-0.9
114,988	+				+1.0
114,988	+				-2.2
114,988	+				-0.1
114,989	-				+0.2
115,002	+				-0.6
115,002	+				-0.3
115,002	+				-1.5
115,002	+				-0.4
115,003	-				-1.4
115,003	-				-0.3
115,003	-				-0.5
115,003	-				-0.9
115,006	+				+1.1
115,014	+				+1.9
115,014	+				-0.2
115,034	+				-2.0
115,035	-				+0.3
115,035	-				-1.0
115,042	-				-0.4
115,049	+				-0.4
115,049	+				-0.8
115,050	-				+0.5
115,050	-				-1.4
115,051	+				-0.2
115,051	+				-0.3
115,051	+				-0.5
115,052	-				-2.3
115,057	+				+1.0
115,057	+				-0.8
115,058	-				+0.2
115,073	-				+0.2
115,079	-				+0.1
115,079	-				-0.6
115,079	-				-1.0
115,083	+				-1.2
115,084	-				+1.3
115,084	-				-0.3
115,084	-				+0.9
115,101	+				+0.4
115,101	+				+1.2
115,101	+				+0.4
115,102	-				+0.8
115,102	-				-0.9
115,102	-				-1.6
115,109	-				-2.0
115,138	-				+0.6
115,138	-				-1.7
115,138	-				-0.0
115,152	+				-0.6
115,152	+				-0.9
115,153	-				-0.6
115,153	-				+0.3
115,153	-				-0.7
115,153	-				-1.2
115,154	+				-0.8
115,154	+				-0.4
115,154	+				-0.0
115,154	+				+0.2
115,154	+				-0.3
115,155	-				-1.0
115,159	+				-0.2
115,159	+				-0.0
115,160	-				-0.0
115,175	+				+0.5
115,176	-				+1.3
115,185	-				-0.3
115,196	-				-1.9
115,196	-				+0.2
115,196	-				-0.8
115,234	+				-0.7
115,234	+				-1.0
115,234	+				-0.1
115,235	-				-0.4
115,235	-				-1.6
115,236	+				-2.2
115,236	+				-1.1
115,237	-				+0.9
115,237	-				-0.0
115,237	-				-0.3
115,237	-				-0.1
115,243	+				-2.1
115,259	-				-0.3
115,259	-				-0.6
115,278	+				-1.8
115,278	+				-1.8
115,278	+				+0.2
115,278	+				+0.1
115,292	+				+2.0
115,300	-				-0.8
115,301	+				-0.2
115,317	+				-1.5
115,318	-				-0.7
115,318	-				-0.6
115,318	-				+0.5
115,346	-				-1.9
115,346	-				-0.1
115,417	+		HMPREF1078_RS07815	0.10	-0.7
115,417	+		HMPREF1078_RS07815	0.10	-1.4
115,417	+		HMPREF1078_RS07815	0.10	-0.8
115,417	+		HMPREF1078_RS07815	0.10	-1.1
115,417	+		HMPREF1078_RS07815	0.10	-2.2
115,418	-		HMPREF1078_RS07815	0.11	-0.0
115,418	-		HMPREF1078_RS07815	0.11	-1.2
115,418	-		HMPREF1078_RS07815	0.11	-2.3
115,418	-		HMPREF1078_RS07815	0.11	-0.8
115,422	+		HMPREF1078_RS07815	0.11	+1.6
115,422	+		HMPREF1078_RS07815	0.11	+0.6
115,423	-		HMPREF1078_RS07815	0.11	-0.4
115,441	+		HMPREF1078_RS07815	0.13	-1.2
115,446	+		HMPREF1078_RS07815	0.13	+0.6
115,447	-		HMPREF1078_RS07815	0.13	-0.3
115,463	-		HMPREF1078_RS07815	0.15	-0.2
115,545	+		HMPREF1078_RS07815	0.23	-0.0
115,546	-		HMPREF1078_RS07815	0.23	-1.5
115,598	-		HMPREF1078_RS07815	0.29	-1.3
115,599	+		HMPREF1078_RS07815	0.29	-0.2
115,605	+		HMPREF1078_RS07815	0.29	-1.4
115,636	+		HMPREF1078_RS07815	0.32	-0.2
115,665	+		HMPREF1078_RS07815	0.35	-0.6
115,679	-		HMPREF1078_RS07815	0.37	-3.1
115,756	+		HMPREF1078_RS07815	0.44	+0.9
115,851	+		HMPREF1078_RS07815	0.54	+0.4
115,851	+		HMPREF1078_RS07815	0.54	-0.2
115,851	+		HMPREF1078_RS07815	0.54	+0.5
115,895	-		HMPREF1078_RS07815	0.58	-2.0
115,897	-		HMPREF1078_RS07815	0.58	+1.2
115,909	+		HMPREF1078_RS07815	0.60	-0.6
115,910	-		HMPREF1078_RS07815	0.60	-1.0
115,917	+		HMPREF1078_RS07815	0.60	+0.5
115,918	-		HMPREF1078_RS07815	0.61	-0.3
115,934	-		HMPREF1078_RS07815	0.62	-0.1
116,050	+		HMPREF1078_RS07815	0.74	-0.4
116,050	+		HMPREF1078_RS07815	0.74	-0.2
116,051	-		HMPREF1078_RS07815	0.74	-0.9
116,051	-		HMPREF1078_RS07815	0.74	-2.2
116,052	+		HMPREF1078_RS07815	0.74	-0.6
116,052	+		HMPREF1078_RS07815	0.74	+0.6
116,052	+		HMPREF1078_RS07815	0.74	+1.0
116,053	-		HMPREF1078_RS07815	0.74	-0.3
116,053	-		HMPREF1078_RS07815	0.74	+0.3
116,070	+		HMPREF1078_RS07815	0.76	-0.9
116,070	+		HMPREF1078_RS07815	0.76	-2.6
116,070	+		HMPREF1078_RS07815	0.76	+0.1
116,071	-		HMPREF1078_RS07815	0.76	-0.9
116,073	+		HMPREF1078_RS07815	0.76	-0.5
116,074	-		HMPREF1078_RS07815	0.76	+0.0
116,113	+		HMPREF1078_RS07815	0.80	-0.7
116,114	-		HMPREF1078_RS07815	0.80	-3.8
116,117	+		HMPREF1078_RS07815	0.80	-0.4
116,117	+		HMPREF1078_RS07815	0.80	+0.1
116,117	+		HMPREF1078_RS07815	0.80	-1.8
116,118	-		HMPREF1078_RS07815	0.81	-0.1
116,118	-		HMPREF1078_RS07815	0.81	+1.5
116,122	+		HMPREF1078_RS07815	0.81	-0.5
116,125	-		HMPREF1078_RS07815	0.81	-0.9
116,125	-		HMPREF1078_RS07815	0.81	+0.1
116,125	-		HMPREF1078_RS07815	0.81	-1.0
116,199	+		HMPREF1078_RS07815	0.89	-1.4
116,199	+		HMPREF1078_RS07815	0.89	-3.8
116,200	-		HMPREF1078_RS07815	0.89	-0.3
116,200	-		HMPREF1078_RS07815	0.89	+0.1
116,200	-		HMPREF1078_RS07815	0.89	-0.2
116,221	+				+0.7
116,222	-				-0.8
116,222	-				-0.5
116,266	+				+0.4
116,274	-				+0.7
116,276	+				+0.6
116,276	+				-1.0
116,277	-				+0.1
116,277	-				-0.8
116,281	+				+0.1
116,281	+				-2.2
116,281	+				-0.3
116,282	-				-3.2
116,282	-				-0.2
116,289	-				-1.2
116,328	-				-0.9
116,334	+				-0.9
116,335	-				-0.4
116,336	+				-1.5
116,337	-				+1.0
116,337	-				+0.7
116,337	-				-1.7
116,344	+				-2.0
116,345	-				-0.8
116,350	-				+0.3
116,350	-				+0.7
116,357	+				+0.0
116,357	+				+0.5
116,357	+				+1.7
116,359	+				-0.3
116,360	-				-1.3
116,365	+				-0.1
116,365	+				-0.4
116,365	+				-1.4
116,365	+				-2.0
116,366	-				-0.5
116,374	-				+0.0
116,374	-				-0.2
116,384	+				+0.9
116,385	-				+0.6
116,385	-				-2.5
116,387	-				+2.0
116,387	-				-1.9
116,403	+				+0.4
116,404	-				-1.8
116,404	-				-0.8
116,404	-				+0.8
116,404	-				+0.2
116,412	-				-0.6
116,412	-				+1.1
116,412	-				-1.8
116,422	+				-0.6
116,422	+				-0.9
116,422	+				-2.1
116,423	-				-0.8
116,447	+				-0.5
116,480	+				+2.2
116,480	+				+0.2
116,480	+				+1.5
116,480	+				+0.7
116,480	+				-1.7
116,480	+				+1.3
116,481	-				+2.4
116,481	-				+0.3
116,491	+				-0.7
116,491	+				-1.1
116,492	-				-0.2
116,505	-				+0.6
116,544	+				+0.2
116,544	+				-0.4
116,545	-				+0.9
116,545	-				-0.2
116,549	-				-0.3
116,558	+				+0.6
116,562	+				+1.2
116,570	-				+0.3
116,570	-				+0.6
116,573	-				-0.4
116,656	+		HMPREF1078_RS19555	0.51	-2.9
116,695	+		HMPREF1078_RS19555	0.75	-1.5
116,701	-		HMPREF1078_RS19555	0.79	-0.4
116,701	-		HMPREF1078_RS19555	0.79	-0.9
116,701	-		HMPREF1078_RS19555	0.79	-2.3
116,706	+		HMPREF1078_RS19555	0.82	-1.5
116,707	-		HMPREF1078_RS19555	0.83	-0.6
116,733	+				-2.9
116,733	+				-0.5
116,734	-				+0.6
116,740	-				-0.5
116,747	+				-0.8
116,748	-				-1.0
116,774	-				-1.6
116,774	-				+0.1
116,776	+				-2.5
116,777	-				-0.9
116,777	-				-1.5
116,777	-				-1.0
116,779	+				-0.8
116,780	-				-0.0
116,783	+				-1.7
116,790	-				+0.2
116,825	+				-1.2
116,825	+				-1.7
116,825	+				+0.2
116,830	-				-1.4
116,876	+				-0.3
116,923	-				-0.5
116,948	-				+0.8
116,978	+		HMPREF1078_RS07820	0.10	-0.1
116,979	-		HMPREF1078_RS07820	0.11	+0.7
116,979	-		HMPREF1078_RS07820	0.11	+0.4
116,980	+		HMPREF1078_RS07820	0.11	-1.6
116,981	-		HMPREF1078_RS07820	0.11	+0.5
117,075	+		HMPREF1078_RS07820	0.28	-2.5
117,097	+		HMPREF1078_RS07820	0.32	-1.5
117,098	-		HMPREF1078_RS07820	0.33	-1.5
117,103	+		HMPREF1078_RS07820	0.34	-1.9
117,135	-		HMPREF1078_RS07820	0.39	+1.1
117,160	+		HMPREF1078_RS07820	0.44	+0.8
117,160	+		HMPREF1078_RS07820	0.44	+0.8
117,160	+		HMPREF1078_RS07820	0.44	-0.0
117,161	-		HMPREF1078_RS07820	0.44	-0.6
117,212	+		HMPREF1078_RS07820	0.54	-1.6
117,212	+		HMPREF1078_RS07820	0.54	+0.7
117,212	+		HMPREF1078_RS07820	0.54	+0.4
117,213	-		HMPREF1078_RS07820	0.54	+0.7
117,213	-		HMPREF1078_RS07820	0.54	+1.5
117,213	-		HMPREF1078_RS07820	0.54	+1.2
117,213	-		HMPREF1078_RS07820	0.54	+0.8
117,213	-		HMPREF1078_RS07820	0.54	-1.5
117,268	+		HMPREF1078_RS07820	0.64	+0.4
117,311	+		HMPREF1078_RS07820	0.72	+2.4