Experiment: GAM 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04595 and HMPREF1078_RS04600 are separated by 234 nucleotides HMPREF1078_RS04600 and HMPREF1078_RS04605 are separated by 129 nucleotides HMPREF1078_RS04605 and HMPREF1078_RS04610 are separated by 102 nucleotides
HMPREF1078_RS04595: HMPREF1078_RS04595 - hypothetical protein, at 154,952 to 157,063
_RS04595
HMPREF1078_RS04600: HMPREF1078_RS04600 - carbon starvation protein A, at 157,298 to 158,713
_RS04600
HMPREF1078_RS04605: HMPREF1078_RS04605 - GatB/YqeY domain-containing protein, at 158,843 to 159,292
_RS04605
HMPREF1078_RS04610: HMPREF1078_RS04610 - cell division protein FtsZ, at 159,395 to 160,738
_RS04610
Position (kb) 157
158
159 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 156.309 kb on + strand, within HMPREF1078_RS04595 at 156.310 kb on - strand, within HMPREF1078_RS04595 at 156.310 kb on - strand, within HMPREF1078_RS04595 at 156.408 kb on - strand, within HMPREF1078_RS04595 at 156.411 kb on + strand, within HMPREF1078_RS04595 at 156.411 kb on + strand, within HMPREF1078_RS04595 at 156.412 kb on - strand, within HMPREF1078_RS04595 at 156.424 kb on - strand, within HMPREF1078_RS04595 at 156.463 kb on + strand, within HMPREF1078_RS04595 at 156.463 kb on + strand, within HMPREF1078_RS04595 at 156.464 kb on - strand, within HMPREF1078_RS04595 at 156.508 kb on + strand, within HMPREF1078_RS04595 at 156.509 kb on - strand, within HMPREF1078_RS04595 at 156.573 kb on + strand, within HMPREF1078_RS04595 at 156.683 kb on - strand, within HMPREF1078_RS04595 at 156.684 kb on + strand, within HMPREF1078_RS04595 at 156.747 kb on + strand, within HMPREF1078_RS04595 at 156.883 kb on + strand at 156.883 kb on + strand at 156.914 kb on + strand at 157.066 kb on + strand at 157.066 kb on + strand at 157.126 kb on + strand at 157.162 kb on + strand at 157.294 kb on + strand at 157.296 kb on + strand at 157.297 kb on - strand at 157.300 kb on - strand at 157.300 kb on - strand at 157.301 kb on + strand at 157.301 kb on + strand at 157.301 kb on + strand at 157.302 kb on - strand at 157.397 kb on + strand at 157.398 kb on - strand at 157.422 kb on + strand at 157.423 kb on - strand at 157.423 kb on - strand at 157.423 kb on - strand at 157.423 kb on - strand at 157.469 kb on + strand, within HMPREF1078_RS04600 at 157.474 kb on - strand, within HMPREF1078_RS04600 at 157.596 kb on + strand, within HMPREF1078_RS04600 at 157.752 kb on - strand, within HMPREF1078_RS04600 at 157.752 kb on - strand, within HMPREF1078_RS04600 at 157.752 kb on - strand, within HMPREF1078_RS04600 at 157.763 kb on + strand, within HMPREF1078_RS04600 at 157.764 kb on - strand, within HMPREF1078_RS04600 at 157.764 kb on - strand, within HMPREF1078_RS04600 at 157.765 kb on + strand, within HMPREF1078_RS04600 at 157.765 kb on + strand, within HMPREF1078_RS04600 at 157.796 kb on - strand, within HMPREF1078_RS04600 at 157.834 kb on + strand, within HMPREF1078_RS04600 at 157.834 kb on + strand, within HMPREF1078_RS04600 at 157.843 kb on + strand, within HMPREF1078_RS04600 at 157.854 kb on + strand, within HMPREF1078_RS04600 at 157.858 kb on + strand, within HMPREF1078_RS04600 at 157.858 kb on + strand, within HMPREF1078_RS04600 at 157.888 kb on + strand, within HMPREF1078_RS04600 at 157.898 kb on - strand, within HMPREF1078_RS04600 at 157.918 kb on + strand, within HMPREF1078_RS04600 at 157.919 kb on - strand, within HMPREF1078_RS04600 at 158.017 kb on + strand, within HMPREF1078_RS04600 at 158.029 kb on + strand, within HMPREF1078_RS04600 at 158.047 kb on - strand, within HMPREF1078_RS04600 at 158.157 kb on - strand, within HMPREF1078_RS04600 at 158.205 kb on + strand, within HMPREF1078_RS04600 at 158.233 kb on + strand, within HMPREF1078_RS04600 at 158.233 kb on + strand, within HMPREF1078_RS04600 at 158.424 kb on + strand, within HMPREF1078_RS04600 at 158.449 kb on + strand, within HMPREF1078_RS04600 at 158.501 kb on - strand, within HMPREF1078_RS04600 at 158.552 kb on - strand, within HMPREF1078_RS04600 at 158.579 kb on - strand at 158.630 kb on + strand at 158.675 kb on + strand at 158.676 kb on - strand at 158.676 kb on - strand at 158.713 kb on + strand at 158.760 kb on + strand at 158.760 kb on + strand at 158.817 kb on - strand at 158.817 kb on - strand at 158.878 kb on + strand at 158.878 kb on + strand at 158.878 kb on + strand at 158.879 kb on - strand at 158.879 kb on - strand at 158.879 kb on - strand at 158.879 kb on - strand at 158.879 kb on - strand at 158.879 kb on - strand at 158.925 kb on - strand, within HMPREF1078_RS04605 at 159.087 kb on + strand, within HMPREF1078_RS04605 at 159.088 kb on - strand, within HMPREF1078_RS04605 at 159.160 kb on + strand, within HMPREF1078_RS04605 at 159.235 kb on + strand, within HMPREF1078_RS04605 at 159.292 kb on + strand at 159.293 kb on - strand at 159.293 kb on - strand at 159.305 kb on + strand at 159.313 kb on + strand at 159.314 kb on - strand at 159.324 kb on - strand at 159.327 kb on + strand at 159.328 kb on - strand at 159.348 kb on - strand at 159.372 kb on + strand at 159.373 kb on - strand at 159.382 kb on + strand at 159.383 kb on - strand at 159.393 kb on - strand at 159.401 kb on - strand at 159.410 kb on - strand at 159.479 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction GAM 1 x (C) remove 156,309 + HMPREF1078_RS04595 0.64 +0.0 156,310 - HMPREF1078_RS04595 0.64 -0.5 156,310 - HMPREF1078_RS04595 0.64 -0.5 156,408 - HMPREF1078_RS04595 0.69 -0.6 156,411 + HMPREF1078_RS04595 0.69 -0.6 156,411 + HMPREF1078_RS04595 0.69 -1.7 156,412 - HMPREF1078_RS04595 0.69 -0.2 156,424 - HMPREF1078_RS04595 0.70 -0.2 156,463 + HMPREF1078_RS04595 0.72 -1.0 156,463 + HMPREF1078_RS04595 0.72 -0.2 156,464 - HMPREF1078_RS04595 0.72 +0.0 156,508 + HMPREF1078_RS04595 0.74 +1.4 156,509 - HMPREF1078_RS04595 0.74 -0.3 156,573 + HMPREF1078_RS04595 0.77 +0.5 156,683 - HMPREF1078_RS04595 0.82 -0.5 156,684 + HMPREF1078_RS04595 0.82 -1.2 156,747 + HMPREF1078_RS04595 0.85 -0.9 156,883 + -0.4 156,883 + -1.4 156,914 + +0.4 157,066 + -1.0 157,066 + +1.0 157,126 + +0.1 157,162 + +0.3 157,294 + -2.0 157,296 + -1.3 157,297 - +0.0 157,300 - -0.0 157,300 - -0.2 157,301 + +0.4 157,301 + -1.2 157,301 + -0.4 157,302 - -0.6 157,397 + -1.6 157,398 - -1.6 157,422 + -0.2 157,423 - -0.0 157,423 - +0.7 157,423 - -3.2 157,423 - -1.0 157,469 + HMPREF1078_RS04600 0.12 -0.4 157,474 - HMPREF1078_RS04600 0.12 +0.0 157,596 + HMPREF1078_RS04600 0.21 -0.1 157,752 - HMPREF1078_RS04600 0.32 -0.3 157,752 - HMPREF1078_RS04600 0.32 +0.0 157,752 - HMPREF1078_RS04600 0.32 +1.0 157,763 + HMPREF1078_RS04600 0.33 -0.9 157,764 - HMPREF1078_RS04600 0.33 -0.2 157,764 - HMPREF1078_RS04600 0.33 -0.1 157,765 + HMPREF1078_RS04600 0.33 -2.6 157,765 + HMPREF1078_RS04600 0.33 -0.6 157,796 - HMPREF1078_RS04600 0.35 +0.4 157,834 + HMPREF1078_RS04600 0.38 -1.1 157,834 + HMPREF1078_RS04600 0.38 -1.3 157,843 + HMPREF1078_RS04600 0.38 +0.0 157,854 + HMPREF1078_RS04600 0.39 -0.3 157,858 + HMPREF1078_RS04600 0.40 -0.4 157,858 + HMPREF1078_RS04600 0.40 -0.8 157,888 + HMPREF1078_RS04600 0.42 -1.2 157,898 - HMPREF1078_RS04600 0.42 +0.5 157,918 + HMPREF1078_RS04600 0.44 +0.3 157,919 - HMPREF1078_RS04600 0.44 -0.3 158,017 + HMPREF1078_RS04600 0.51 -1.2 158,029 + HMPREF1078_RS04600 0.52 -1.8 158,047 - HMPREF1078_RS04600 0.53 -0.8 158,157 - HMPREF1078_RS04600 0.61 +0.0 158,205 + HMPREF1078_RS04600 0.64 -0.0 158,233 + HMPREF1078_RS04600 0.66 -1.6 158,233 + HMPREF1078_RS04600 0.66 -0.6 158,424 + HMPREF1078_RS04600 0.80 -0.2 158,449 + HMPREF1078_RS04600 0.81 +0.3 158,501 - HMPREF1078_RS04600 0.85 -0.3 158,552 - HMPREF1078_RS04600 0.89 +1.3 158,579 - +0.1 158,630 + -1.2 158,675 + +0.9 158,676 - -0.3 158,676 - -2.9 158,713 + +0.3 158,760 + -2.0 158,760 + -0.9 158,817 - -0.7 158,817 - +0.1 158,878 + -0.2 158,878 + -1.0 158,878 + -0.2 158,879 - -1.1 158,879 - -0.3 158,879 - +0.8 158,879 - +0.4 158,879 - -0.8 158,879 - -0.7 158,925 - HMPREF1078_RS04605 0.18 +0.8 159,087 + HMPREF1078_RS04605 0.54 -0.5 159,088 - HMPREF1078_RS04605 0.54 +0.3 159,160 + HMPREF1078_RS04605 0.70 -0.9 159,235 + HMPREF1078_RS04605 0.87 -0.1 159,292 + -0.1 159,293 - -0.3 159,293 - -0.7 159,305 + -0.8 159,313 + -0.2 159,314 - -2.5 159,324 - +0.3 159,327 + -0.5 159,328 - +0.4 159,348 - -0.2 159,372 + -1.1 159,373 - +0.6 159,382 + -0.2 159,383 - -1.6 159,393 - +0.1 159,401 - -1.9 159,410 - -1.7 159,479 - -0.1
Or see this region's nucleotide sequence