Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14185 and HMPREF1078_RS14190 overlap by 1 nucleotides HMPREF1078_RS14190 and HMPREF1078_RS14195 overlap by 1 nucleotides HMPREF1078_RS14195 and HMPREF1078_RS14200 are separated by 87 nucleotides
HMPREF1078_RS14185: HMPREF1078_RS14185 - gliding motility-associated protein GldE, at 309,485 to 310,825
_RS14185
HMPREF1078_RS14190: HMPREF1078_RS14190 - hypothetical protein, at 310,825 to 311,400
_RS14190
HMPREF1078_RS14195: HMPREF1078_RS14195 - 4'-phosphopantetheinyl transferase superfamily protein, at 311,400 to 312,017
_RS14195
HMPREF1078_RS14200: HMPREF1078_RS14200 - shikimate dehydrogenase, at 312,105 to 312,845
_RS14200
Position (kb) 310
311
312 Strain fitness (log2 ratio) -2
-1
0
1 at 309.832 kb on + strand, within HMPREF1078_RS14185 at 309.896 kb on + strand, within HMPREF1078_RS14185 at 309.942 kb on + strand, within HMPREF1078_RS14185 at 309.984 kb on + strand, within HMPREF1078_RS14185 at 309.984 kb on + strand, within HMPREF1078_RS14185 at 310.034 kb on + strand, within HMPREF1078_RS14185 at 310.253 kb on + strand, within HMPREF1078_RS14185 at 310.289 kb on + strand, within HMPREF1078_RS14185 at 310.289 kb on + strand, within HMPREF1078_RS14185 at 310.361 kb on + strand, within HMPREF1078_RS14185 at 310.584 kb on + strand, within HMPREF1078_RS14185 at 310.830 kb on + strand at 310.844 kb on + strand at 310.844 kb on + strand at 310.881 kb on + strand at 310.890 kb on + strand, within HMPREF1078_RS14190 at 310.890 kb on + strand, within HMPREF1078_RS14190 at 310.890 kb on + strand, within HMPREF1078_RS14190 at 310.964 kb on + strand, within HMPREF1078_RS14190 at 310.969 kb on + strand, within HMPREF1078_RS14190 at 310.971 kb on + strand, within HMPREF1078_RS14190 at 311.071 kb on + strand, within HMPREF1078_RS14190 at 311.256 kb on + strand, within HMPREF1078_RS14190 at 311.299 kb on + strand, within HMPREF1078_RS14190 at 311.302 kb on + strand, within HMPREF1078_RS14190 at 311.302 kb on + strand, within HMPREF1078_RS14190 at 311.302 kb on + strand, within HMPREF1078_RS14190 at 311.366 kb on + strand at 311.398 kb on + strand at 312.039 kb on - strand at 312.039 kb on - strand at 312.040 kb on + strand at 312.040 kb on + strand at 312.041 kb on - strand at 312.041 kb on - strand at 312.041 kb on - strand at 312.041 kb on - strand at 312.042 kb on + strand at 312.042 kb on + strand at 312.042 kb on + strand at 312.042 kb on + strand at 312.042 kb on + strand at 312.042 kb on + strand at 312.043 kb on - strand at 312.043 kb on - strand at 312.043 kb on - strand at 312.043 kb on - strand at 312.043 kb on - strand at 312.043 kb on - strand at 312.043 kb on - strand at 312.043 kb on - strand at 312.045 kb on - strand at 312.056 kb on + strand at 312.062 kb on + strand at 312.062 kb on + strand at 312.063 kb on - strand at 312.071 kb on + strand at 312.072 kb on - strand at 312.072 kb on - strand at 312.077 kb on + strand at 312.100 kb on - strand at 312.100 kb on - strand at 312.106 kb on + strand at 312.107 kb on - strand at 312.142 kb on - strand at 312.223 kb on + strand, within HMPREF1078_RS14200 at 312.224 kb on - strand, within HMPREF1078_RS14200 at 312.224 kb on - strand, within HMPREF1078_RS14200 at 312.317 kb on + strand, within HMPREF1078_RS14200 at 312.334 kb on + strand, within HMPREF1078_RS14200 at 312.368 kb on - strand, within HMPREF1078_RS14200
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 309,832 + HMPREF1078_RS14185 0.26 +1.2 309,896 + HMPREF1078_RS14185 0.31 -0.7 309,942 + HMPREF1078_RS14185 0.34 -0.0 309,984 + HMPREF1078_RS14185 0.37 -0.2 309,984 + HMPREF1078_RS14185 0.37 -1.0 310,034 + HMPREF1078_RS14185 0.41 -1.2 310,253 + HMPREF1078_RS14185 0.57 -1.4 310,289 + HMPREF1078_RS14185 0.60 -0.0 310,289 + HMPREF1078_RS14185 0.60 -0.0 310,361 + HMPREF1078_RS14185 0.65 -1.5 310,584 + HMPREF1078_RS14185 0.82 -0.7 310,830 + -0.3 310,844 + -0.3 310,844 + +1.3 310,881 + -1.5 310,890 + HMPREF1078_RS14190 0.11 -0.6 310,890 + HMPREF1078_RS14190 0.11 +0.2 310,890 + HMPREF1078_RS14190 0.11 +0.7 310,964 + HMPREF1078_RS14190 0.24 -2.3 310,969 + HMPREF1078_RS14190 0.25 -0.0 310,971 + HMPREF1078_RS14190 0.25 +0.9 311,071 + HMPREF1078_RS14190 0.43 -0.5 311,256 + HMPREF1078_RS14190 0.75 +0.9 311,299 + HMPREF1078_RS14190 0.82 -1.4 311,302 + HMPREF1078_RS14190 0.83 +0.3 311,302 + HMPREF1078_RS14190 0.83 -1.2 311,302 + HMPREF1078_RS14190 0.83 +0.4 311,366 + -0.6 311,398 + +0.3 312,039 - +0.6 312,039 - +0.1 312,040 + -1.4 312,040 + +1.1 312,041 - +0.1 312,041 - -1.0 312,041 - +1.3 312,041 - +0.1 312,042 + +1.3 312,042 + -0.3 312,042 + +0.1 312,042 + +0.5 312,042 + +0.1 312,042 + -0.9 312,043 - +0.3 312,043 - +0.0 312,043 - +0.2 312,043 - -1.0 312,043 - +1.2 312,043 - -0.2 312,043 - +1.3 312,043 - -0.0 312,045 - +1.0 312,056 + +0.8 312,062 + -0.0 312,062 + +1.4 312,063 - +0.4 312,071 + -1.8 312,072 - -0.9 312,072 - -1.5 312,077 + +0.7 312,100 - +0.2 312,100 - +0.8 312,106 + +1.0 312,107 - +1.2 312,142 - -2.5 312,223 + HMPREF1078_RS14200 0.16 -0.9 312,224 - HMPREF1078_RS14200 0.16 +0.3 312,224 - HMPREF1078_RS14200 0.16 -2.3 312,317 + HMPREF1078_RS14200 0.29 +0.8 312,334 + HMPREF1078_RS14200 0.31 -0.2 312,368 - HMPREF1078_RS14200 0.35 +0.7
Or see this region's nucleotide sequence