Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13100 and HMPREF1078_RS13105 overlap by 7 nucleotides HMPREF1078_RS13105 and HMPREF1078_RS13110 are separated by 38 nucleotides HMPREF1078_RS13110 and HMPREF1078_RS13115 are separated by 93 nucleotides
HMPREF1078_RS13100: HMPREF1078_RS13100 - YIP1 family protein, at 46,170 to 46,760
_RS13100
HMPREF1078_RS13105: HMPREF1078_RS13105 - HAD hydrolase-like protein, at 46,754 to 47,410
_RS13105
HMPREF1078_RS13110: HMPREF1078_RS13110 - gamma carbonic anhydrase family protein, at 47,449 to 47,970
_RS13110
HMPREF1078_RS13115: HMPREF1078_RS13115 - aminopeptidase P family protein, at 48,064 to 49,854
_RS13115
Position (kb) 47
48 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 46.511 kb on + strand, within HMPREF1078_RS13100 at 46.531 kb on + strand, within HMPREF1078_RS13100 at 46.756 kb on - strand at 46.756 kb on - strand at 46.801 kb on + strand at 46.946 kb on - strand, within HMPREF1078_RS13105 at 46.959 kb on - strand, within HMPREF1078_RS13105 at 46.984 kb on + strand, within HMPREF1078_RS13105 at 47.028 kb on + strand, within HMPREF1078_RS13105 at 47.046 kb on + strand, within HMPREF1078_RS13105 at 47.164 kb on - strand, within HMPREF1078_RS13105 at 47.236 kb on - strand, within HMPREF1078_RS13105 at 47.282 kb on + strand, within HMPREF1078_RS13105 at 47.282 kb on + strand, within HMPREF1078_RS13105 at 47.306 kb on + strand, within HMPREF1078_RS13105 at 47.394 kb on + strand at 47.395 kb on - strand at 47.395 kb on - strand at 47.395 kb on - strand at 47.420 kb on + strand at 47.421 kb on - strand at 47.427 kb on + strand at 47.486 kb on + strand at 47.692 kb on + strand, within HMPREF1078_RS13110 at 47.794 kb on + strand, within HMPREF1078_RS13110 at 47.795 kb on - strand, within HMPREF1078_RS13110 at 47.796 kb on + strand, within HMPREF1078_RS13110 at 47.951 kb on - strand at 47.951 kb on - strand at 47.990 kb on - strand at 47.990 kb on - strand at 48.038 kb on - strand at 48.065 kb on + strand at 48.134 kb on + strand at 48.149 kb on + strand at 48.150 kb on - strand at 48.150 kb on - strand at 48.208 kb on - strand at 48.215 kb on + strand at 48.216 kb on - strand at 48.216 kb on - strand at 48.220 kb on + strand at 48.221 kb on - strand at 48.221 kb on - strand at 48.221 kb on - strand at 48.288 kb on + strand, within HMPREF1078_RS13115 at 48.288 kb on + strand, within HMPREF1078_RS13115 at 48.289 kb on - strand, within HMPREF1078_RS13115 at 48.324 kb on - strand, within HMPREF1078_RS13115 at 48.410 kb on - strand, within HMPREF1078_RS13115 at 48.410 kb on - strand, within HMPREF1078_RS13115 at 48.669 kb on - strand, within HMPREF1078_RS13115 at 48.722 kb on - strand, within HMPREF1078_RS13115 at 48.743 kb on + strand, within HMPREF1078_RS13115 at 48.752 kb on - strand, within HMPREF1078_RS13115 at 48.752 kb on - strand, within HMPREF1078_RS13115 at 48.752 kb on - strand, within HMPREF1078_RS13115 at 48.926 kb on - strand, within HMPREF1078_RS13115
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 46,511 + HMPREF1078_RS13100 0.58 -1.5 46,531 + HMPREF1078_RS13100 0.61 +0.2 46,756 - +1.0 46,756 - +0.4 46,801 + -1.5 46,946 - HMPREF1078_RS13105 0.29 -0.2 46,959 - HMPREF1078_RS13105 0.31 -0.8 46,984 + HMPREF1078_RS13105 0.35 +0.5 47,028 + HMPREF1078_RS13105 0.42 +0.2 47,046 + HMPREF1078_RS13105 0.44 +1.2 47,164 - HMPREF1078_RS13105 0.62 -0.3 47,236 - HMPREF1078_RS13105 0.73 +0.6 47,282 + HMPREF1078_RS13105 0.80 -0.0 47,282 + HMPREF1078_RS13105 0.80 -1.5 47,306 + HMPREF1078_RS13105 0.84 +0.1 47,394 + +1.0 47,395 - -0.4 47,395 - -0.1 47,395 - -0.6 47,420 + +0.9 47,421 - -0.5 47,427 + +0.4 47,486 + -1.0 47,692 + HMPREF1078_RS13110 0.47 -1.0 47,794 + HMPREF1078_RS13110 0.66 -1.2 47,795 - HMPREF1078_RS13110 0.66 -1.7 47,796 + HMPREF1078_RS13110 0.66 +0.2 47,951 - -1.7 47,951 - -0.3 47,990 - +0.4 47,990 - +1.1 48,038 - +0.8 48,065 + +0.2 48,134 + +1.8 48,149 + +1.0 48,150 - +0.3 48,150 - -2.0 48,208 - +0.1 48,215 + +0.8 48,216 - +1.0 48,216 - +1.3 48,220 + +3.5 48,221 - -0.1 48,221 - +1.6 48,221 - -0.5 48,288 + HMPREF1078_RS13115 0.13 +1.0 48,288 + HMPREF1078_RS13115 0.13 -1.3 48,289 - HMPREF1078_RS13115 0.13 -2.0 48,324 - HMPREF1078_RS13115 0.15 +0.2 48,410 - HMPREF1078_RS13115 0.19 +0.0 48,410 - HMPREF1078_RS13115 0.19 -0.1 48,669 - HMPREF1078_RS13115 0.34 +0.1 48,722 - HMPREF1078_RS13115 0.37 +0.5 48,743 + HMPREF1078_RS13115 0.38 -2.0 48,752 - HMPREF1078_RS13115 0.38 +0.0 48,752 - HMPREF1078_RS13115 0.38 +2.3 48,752 - HMPREF1078_RS13115 0.38 +0.4 48,926 - HMPREF1078_RS13115 0.48 -0.1
Or see this region's nucleotide sequence