Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03440 and HMPREF1078_RS19495 are separated by 81 nucleotides HMPREF1078_RS19495 and HMPREF1078_RS19730 are separated by 9 nucleotides HMPREF1078_RS19730 and HMPREF1078_RS19735 overlap by 62 nucleotides HMPREF1078_RS19735 and HMPREF1078_RS03450 are separated by 134 nucleotides HMPREF1078_RS03450 and HMPREF1078_RS03455 are separated by 419 nucleotides
HMPREF1078_RS03440: HMPREF1078_RS03440 - Sua5/YciO/YrdC/YwlC family protein, at 811,195 to 813,063
_RS03440
HMPREF1078_RS19495: HMPREF1078_RS19495 - hydrogenase formation protein HypD, at 813,145 to 813,327
_RS19495
HMPREF1078_RS19730: HMPREF1078_RS19730 - hypothetical protein, at 813,337 to 813,573
_RS19730
HMPREF1078_RS19735: HMPREF1078_RS19735 - AIR synthase-related protein, at 813,512 to 813,793
_RS19735
HMPREF1078_RS03450: HMPREF1078_RS03450 - thioredoxin-like domain-containing protein, at 813,928 to 814,428
_RS03450
HMPREF1078_RS03455: HMPREF1078_RS03455 - hypothetical protein, at 814,848 to 815,384
_RS03455
Position (kb) 813
814
815 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 812.980 kb on - strand at 813.066 kb on - strand at 813.106 kb on + strand at 813.106 kb on + strand at 813.107 kb on - strand at 813.107 kb on - strand at 813.138 kb on + strand at 813.201 kb on + strand, within HMPREF1078_RS19495 at 813.311 kb on - strand at 813.314 kb on - strand at 813.314 kb on - strand at 813.314 kb on - strand at 813.314 kb on - strand at 813.314 kb on - strand at 813.315 kb on + strand at 813.315 kb on + strand at 813.315 kb on + strand at 813.315 kb on + strand at 813.316 kb on - strand at 813.316 kb on - strand at 813.316 kb on - strand at 813.318 kb on - strand at 813.319 kb on + strand at 813.320 kb on - strand at 813.325 kb on + strand at 813.326 kb on - strand at 813.329 kb on + strand at 813.329 kb on + strand at 813.333 kb on + strand at 813.336 kb on + strand at 813.336 kb on + strand at 813.342 kb on - strand at 813.387 kb on - strand, within HMPREF1078_RS19730 at 813.428 kb on + strand, within HMPREF1078_RS19730 at 813.565 kb on - strand at 813.694 kb on + strand, within HMPREF1078_RS19735 at 813.694 kb on + strand, within HMPREF1078_RS19735 at 813.695 kb on - strand, within HMPREF1078_RS19735 at 813.695 kb on - strand, within HMPREF1078_RS19735 at 813.695 kb on - strand, within HMPREF1078_RS19735 at 813.710 kb on + strand, within HMPREF1078_RS19735 at 813.737 kb on + strand, within HMPREF1078_RS19735 at 813.789 kb on + strand at 813.790 kb on - strand at 813.790 kb on - strand at 813.790 kb on - strand at 813.821 kb on - strand at 813.832 kb on + strand at 813.833 kb on - strand at 813.837 kb on - strand at 813.837 kb on - strand at 813.837 kb on - strand at 813.839 kb on + strand at 813.840 kb on - strand at 813.862 kb on + strand at 813.863 kb on - strand at 813.863 kb on - strand at 813.865 kb on + strand at 813.865 kb on + strand at 813.866 kb on - strand at 813.866 kb on - strand at 813.866 kb on - strand at 813.866 kb on - strand at 813.868 kb on - strand at 813.870 kb on + strand at 813.915 kb on - strand at 813.967 kb on + strand at 813.981 kb on + strand, within HMPREF1078_RS03450 at 813.983 kb on - strand, within HMPREF1078_RS03450 at 813.984 kb on + strand, within HMPREF1078_RS03450 at 813.985 kb on - strand, within HMPREF1078_RS03450 at 814.011 kb on + strand, within HMPREF1078_RS03450 at 814.012 kb on - strand, within HMPREF1078_RS03450 at 814.032 kb on + strand, within HMPREF1078_RS03450 at 814.034 kb on + strand, within HMPREF1078_RS03450 at 814.035 kb on - strand, within HMPREF1078_RS03450 at 814.035 kb on - strand, within HMPREF1078_RS03450 at 814.086 kb on + strand, within HMPREF1078_RS03450 at 814.086 kb on + strand, within HMPREF1078_RS03450 at 814.086 kb on + strand, within HMPREF1078_RS03450 at 814.087 kb on - strand, within HMPREF1078_RS03450 at 814.087 kb on - strand, within HMPREF1078_RS03450 at 814.120 kb on - strand, within HMPREF1078_RS03450 at 814.142 kb on - strand, within HMPREF1078_RS03450 at 814.154 kb on + strand, within HMPREF1078_RS03450 at 814.155 kb on - strand, within HMPREF1078_RS03450 at 814.155 kb on - strand, within HMPREF1078_RS03450 at 814.155 kb on - strand, within HMPREF1078_RS03450 at 814.155 kb on - strand, within HMPREF1078_RS03450 at 814.155 kb on - strand, within HMPREF1078_RS03450 at 814.209 kb on + strand, within HMPREF1078_RS03450 at 814.232 kb on + strand, within HMPREF1078_RS03450 at 814.232 kb on + strand, within HMPREF1078_RS03450 at 814.232 kb on + strand, within HMPREF1078_RS03450 at 814.233 kb on - strand, within HMPREF1078_RS03450 at 814.233 kb on - strand, within HMPREF1078_RS03450 at 814.233 kb on - strand, within HMPREF1078_RS03450 at 814.259 kb on + strand, within HMPREF1078_RS03450 at 814.260 kb on - strand, within HMPREF1078_RS03450 at 814.412 kb on + strand at 814.412 kb on + strand at 814.412 kb on + strand at 814.412 kb on + strand at 814.412 kb on + strand at 814.413 kb on - strand at 814.413 kb on - strand at 814.413 kb on - strand at 814.428 kb on + strand at 814.428 kb on + strand at 814.429 kb on - strand at 814.446 kb on - strand at 814.467 kb on + strand at 814.563 kb on + strand at 814.563 kb on + strand at 814.594 kb on - strand at 814.695 kb on + strand at 814.695 kb on + strand at 814.696 kb on - strand at 814.696 kb on - strand at 814.698 kb on - strand at 814.698 kb on - strand at 814.756 kb on + strand at 814.756 kb on + strand at 814.756 kb on + strand at 814.776 kb on + strand at 814.776 kb on + strand at 814.777 kb on - strand at 814.777 kb on - strand at 814.795 kb on + strand at 814.795 kb on + strand at 814.796 kb on - strand at 814.846 kb on - strand at 814.853 kb on + strand at 814.853 kb on + strand at 814.903 kb on - strand, within HMPREF1078_RS03455 at 814.903 kb on - strand, within HMPREF1078_RS03455 at 814.903 kb on - strand, within HMPREF1078_RS03455 at 814.903 kb on - strand, within HMPREF1078_RS03455 at 814.903 kb on - strand, within HMPREF1078_RS03455 at 814.904 kb on + strand, within HMPREF1078_RS03455 at 814.904 kb on + strand, within HMPREF1078_RS03455 at 814.905 kb on - strand, within HMPREF1078_RS03455 at 814.905 kb on - strand, within HMPREF1078_RS03455 at 814.905 kb on - strand, within HMPREF1078_RS03455 at 814.906 kb on + strand, within HMPREF1078_RS03455 at 814.907 kb on - strand, within HMPREF1078_RS03455 at 814.915 kb on + strand, within HMPREF1078_RS03455 at 814.916 kb on - strand, within HMPREF1078_RS03455 at 814.917 kb on + strand, within HMPREF1078_RS03455 at 814.917 kb on + strand, within HMPREF1078_RS03455 at 814.918 kb on - strand, within HMPREF1078_RS03455 at 814.918 kb on - strand, within HMPREF1078_RS03455 at 814.918 kb on - strand, within HMPREF1078_RS03455 at 814.918 kb on - strand, within HMPREF1078_RS03455 at 814.918 kb on - strand, within HMPREF1078_RS03455 at 814.952 kb on + strand, within HMPREF1078_RS03455 at 814.952 kb on + strand, within HMPREF1078_RS03455 at 814.953 kb on - strand, within HMPREF1078_RS03455 at 814.954 kb on + strand, within HMPREF1078_RS03455 at 814.955 kb on - strand, within HMPREF1078_RS03455 at 814.971 kb on - strand, within HMPREF1078_RS03455 at 815.011 kb on + strand, within HMPREF1078_RS03455 at 815.011 kb on + strand, within HMPREF1078_RS03455 at 815.011 kb on + strand, within HMPREF1078_RS03455 at 815.034 kb on - strand, within HMPREF1078_RS03455 at 815.034 kb on - strand, within HMPREF1078_RS03455 at 815.076 kb on - strand, within HMPREF1078_RS03455 at 815.091 kb on - strand, within HMPREF1078_RS03455 at 815.129 kb on - strand, within HMPREF1078_RS03455 at 815.141 kb on - strand, within HMPREF1078_RS03455 at 815.180 kb on - strand, within HMPREF1078_RS03455 at 815.180 kb on - strand, within HMPREF1078_RS03455 at 815.180 kb on - strand, within HMPREF1078_RS03455 at 815.180 kb on - strand, within HMPREF1078_RS03455 at 815.180 kb on - strand, within HMPREF1078_RS03455 at 815.183 kb on + strand, within HMPREF1078_RS03455 at 815.183 kb on + strand, within HMPREF1078_RS03455 at 815.184 kb on - strand, within HMPREF1078_RS03455 at 815.184 kb on - strand, within HMPREF1078_RS03455 at 815.185 kb on + strand, within HMPREF1078_RS03455 at 815.250 kb on - strand, within HMPREF1078_RS03455 at 815.271 kb on + strand, within HMPREF1078_RS03455 at 815.331 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 812,980 - -1.2 813,066 - +1.2 813,106 + +0.1 813,106 + -0.3 813,107 - -0.0 813,107 - +0.2 813,138 + -0.0 813,201 + HMPREF1078_RS19495 0.31 +1.9 813,311 - -2.4 813,314 - -0.4 813,314 - -0.1 813,314 - -0.6 813,314 - +0.8 813,314 - +1.1 813,315 + -1.0 813,315 + +0.4 813,315 + +0.8 813,315 + +0.7 813,316 - -1.3 813,316 - +1.2 813,316 - +1.3 813,318 - -0.8 813,319 + +1.1 813,320 - +1.2 813,325 + -2.0 813,326 - -0.2 813,329 + +0.1 813,329 + -2.1 813,333 + -1.5 813,336 + +0.1 813,336 + +0.4 813,342 - -1.1 813,387 - HMPREF1078_RS19730 0.21 -1.2 813,428 + HMPREF1078_RS19730 0.38 -1.0 813,565 - +0.7 813,694 + HMPREF1078_RS19735 0.65 -0.9 813,694 + HMPREF1078_RS19735 0.65 +0.7 813,695 - HMPREF1078_RS19735 0.65 -0.8 813,695 - HMPREF1078_RS19735 0.65 -0.4 813,695 - HMPREF1078_RS19735 0.65 +0.6 813,710 + HMPREF1078_RS19735 0.70 -1.4 813,737 + HMPREF1078_RS19735 0.80 +1.1 813,789 + -0.0 813,790 - -0.9 813,790 - -2.2 813,790 - +0.7 813,821 - -0.0 813,832 + -0.4 813,833 - +0.0 813,837 - -0.6 813,837 - -0.8 813,837 - -0.9 813,839 + -1.2 813,840 - -0.1 813,862 + +0.3 813,863 - -0.3 813,863 - +0.6 813,865 + -0.5 813,865 + -0.2 813,866 - -1.2 813,866 - +1.4 813,866 - -0.5 813,866 - +0.8 813,868 - -1.1 813,870 + +0.7 813,915 - +0.0 813,967 + -0.3 813,981 + HMPREF1078_RS03450 0.11 -2.8 813,983 - HMPREF1078_RS03450 0.11 +1.3 813,984 + HMPREF1078_RS03450 0.11 -0.8 813,985 - HMPREF1078_RS03450 0.11 -0.6 814,011 + HMPREF1078_RS03450 0.17 +0.3 814,012 - HMPREF1078_RS03450 0.17 -0.5 814,032 + HMPREF1078_RS03450 0.21 -0.3 814,034 + HMPREF1078_RS03450 0.21 -0.4 814,035 - HMPREF1078_RS03450 0.21 +0.3 814,035 - HMPREF1078_RS03450 0.21 -0.8 814,086 + HMPREF1078_RS03450 0.32 -1.2 814,086 + HMPREF1078_RS03450 0.32 +0.5 814,086 + HMPREF1078_RS03450 0.32 +0.7 814,087 - HMPREF1078_RS03450 0.32 +0.2 814,087 - HMPREF1078_RS03450 0.32 +0.1 814,120 - HMPREF1078_RS03450 0.38 +0.1 814,142 - HMPREF1078_RS03450 0.43 -0.8 814,154 + HMPREF1078_RS03450 0.45 -0.6 814,155 - HMPREF1078_RS03450 0.45 -0.0 814,155 - HMPREF1078_RS03450 0.45 +2.3 814,155 - HMPREF1078_RS03450 0.45 +0.3 814,155 - HMPREF1078_RS03450 0.45 +0.5 814,155 - HMPREF1078_RS03450 0.45 -0.4 814,209 + HMPREF1078_RS03450 0.56 -0.6 814,232 + HMPREF1078_RS03450 0.61 -0.4 814,232 + HMPREF1078_RS03450 0.61 -1.5 814,232 + HMPREF1078_RS03450 0.61 -1.7 814,233 - HMPREF1078_RS03450 0.61 -1.0 814,233 - HMPREF1078_RS03450 0.61 -0.6 814,233 - HMPREF1078_RS03450 0.61 +0.3 814,259 + HMPREF1078_RS03450 0.66 +0.4 814,260 - HMPREF1078_RS03450 0.66 -0.2 814,412 + -0.5 814,412 + -0.0 814,412 + -0.0 814,412 + -0.6 814,412 + -0.4 814,413 - +0.1 814,413 - +0.0 814,413 - +0.1 814,428 + -0.6 814,428 + -0.2 814,429 - -1.3 814,446 - -0.5 814,467 + +0.2 814,563 + +0.7 814,563 + -0.5 814,594 - -0.1 814,695 + +0.1 814,695 + +1.8 814,696 - -1.2 814,696 - +1.0 814,698 - +0.0 814,698 - +0.3 814,756 + -2.4 814,756 + +0.5 814,756 + +0.3 814,776 + -0.6 814,776 + +0.1 814,777 - +0.3 814,777 - +0.5 814,795 + +0.1 814,795 + +0.1 814,796 - -0.3 814,846 - -1.2 814,853 + -1.3 814,853 + +0.1 814,903 - HMPREF1078_RS03455 0.10 -0.0 814,903 - HMPREF1078_RS03455 0.10 -2.7 814,903 - HMPREF1078_RS03455 0.10 -0.7 814,903 - HMPREF1078_RS03455 0.10 +0.8 814,903 - HMPREF1078_RS03455 0.10 -1.0 814,904 + HMPREF1078_RS03455 0.10 -1.2 814,904 + HMPREF1078_RS03455 0.10 +0.6 814,905 - HMPREF1078_RS03455 0.11 +0.3 814,905 - HMPREF1078_RS03455 0.11 -0.7 814,905 - HMPREF1078_RS03455 0.11 +2.3 814,906 + HMPREF1078_RS03455 0.11 -0.4 814,907 - HMPREF1078_RS03455 0.11 -0.6 814,915 + HMPREF1078_RS03455 0.12 -0.1 814,916 - HMPREF1078_RS03455 0.13 -1.3 814,917 + HMPREF1078_RS03455 0.13 -1.6 814,917 + HMPREF1078_RS03455 0.13 -1.9 814,918 - HMPREF1078_RS03455 0.13 -0.7 814,918 - HMPREF1078_RS03455 0.13 +0.3 814,918 - HMPREF1078_RS03455 0.13 +1.8 814,918 - HMPREF1078_RS03455 0.13 +0.6 814,918 - HMPREF1078_RS03455 0.13 -1.0 814,952 + HMPREF1078_RS03455 0.19 +0.4 814,952 + HMPREF1078_RS03455 0.19 -1.2 814,953 - HMPREF1078_RS03455 0.20 -1.7 814,954 + HMPREF1078_RS03455 0.20 +0.1 814,955 - HMPREF1078_RS03455 0.20 +0.4 814,971 - HMPREF1078_RS03455 0.23 +0.4 815,011 + HMPREF1078_RS03455 0.30 +1.2 815,011 + HMPREF1078_RS03455 0.30 -0.1 815,011 + HMPREF1078_RS03455 0.30 -0.5 815,034 - HMPREF1078_RS03455 0.35 +0.3 815,034 - HMPREF1078_RS03455 0.35 -1.5 815,076 - HMPREF1078_RS03455 0.42 -0.3 815,091 - HMPREF1078_RS03455 0.45 -0.3 815,129 - HMPREF1078_RS03455 0.52 -1.3 815,141 - HMPREF1078_RS03455 0.55 +0.1 815,180 - HMPREF1078_RS03455 0.62 +0.3 815,180 - HMPREF1078_RS03455 0.62 +1.0 815,180 - HMPREF1078_RS03455 0.62 -0.6 815,180 - HMPREF1078_RS03455 0.62 -0.0 815,180 - HMPREF1078_RS03455 0.62 +0.6 815,183 + HMPREF1078_RS03455 0.62 -1.5 815,183 + HMPREF1078_RS03455 0.62 +0.2 815,184 - HMPREF1078_RS03455 0.63 -2.4 815,184 - HMPREF1078_RS03455 0.63 -0.3 815,185 + HMPREF1078_RS03455 0.63 +0.4 815,250 - HMPREF1078_RS03455 0.75 -1.0 815,271 + HMPREF1078_RS03455 0.79 +0.6 815,331 + +0.6
Or see this region's nucleotide sequence