Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS19720

Experiment: LB 1 x (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS03090 and HMPREF1078_RS19720 are separated by 144 nucleotidesHMPREF1078_RS19720 and HMPREF1078_RS03095 are separated by 18 nucleotidesHMPREF1078_RS03095 and HMPREF1078_RS03100 are separated by 205 nucleotidesHMPREF1078_RS03100 and HMPREF1078_RS03105 overlap by 4 nucleotides HMPREF1078_RS03090: HMPREF1078_RS03090 - helix-turn-helix transcriptional regulator, at 738,644 to 739,102 _RS03090 HMPREF1078_RS19720: HMPREF1078_RS19720 - hypothetical protein, at 739,247 to 739,438 _RS19720 HMPREF1078_RS03095: HMPREF1078_RS03095 - hypothetical protein, at 739,457 to 739,771 _RS03095 HMPREF1078_RS03100: HMPREF1078_RS03100 - hypothetical protein, at 739,977 to 740,180 _RS03100 HMPREF1078_RS03105: HMPREF1078_RS03105 - CHC2 zinc finger domain-containing protein, at 740,177 to 743,455 _RS03105 Position (kb) 739 740Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 738.253 kb on + strandat 738.254 kb on - strandat 738.281 kb on - strandat 738.284 kb on + strandat 738.285 kb on - strandat 738.297 kb on + strandat 738.298 kb on - strandat 738.298 kb on - strandat 738.298 kb on - strandat 738.329 kb on - strandat 738.339 kb on + strandat 738.342 kb on - strandat 738.342 kb on - strandat 738.342 kb on - strandat 738.421 kb on + strandat 738.437 kb on - strandat 738.440 kb on - strandat 738.444 kb on - strandat 738.456 kb on + strandat 738.456 kb on + strandat 738.456 kb on + strandat 738.457 kb on - strandat 738.506 kb on - strandat 738.506 kb on - strandat 738.565 kb on - strandat 738.565 kb on - strandat 738.578 kb on - strandat 738.622 kb on + strandat 738.646 kb on - strandat 738.665 kb on + strandat 738.668 kb on + strandat 738.676 kb on + strandat 738.676 kb on + strandat 738.737 kb on + strand, within HMPREF1078_RS03090at 738.738 kb on - strand, within HMPREF1078_RS03090at 738.738 kb on - strand, within HMPREF1078_RS03090at 738.801 kb on - strand, within HMPREF1078_RS03090at 738.807 kb on - strand, within HMPREF1078_RS03090at 738.807 kb on - strand, within HMPREF1078_RS03090at 738.827 kb on + strand, within HMPREF1078_RS03090at 738.827 kb on + strand, within HMPREF1078_RS03090at 738.828 kb on - strand, within HMPREF1078_RS03090at 738.880 kb on + strand, within HMPREF1078_RS03090at 738.880 kb on + strand, within HMPREF1078_RS03090at 738.880 kb on + strand, within HMPREF1078_RS03090at 738.881 kb on - strand, within HMPREF1078_RS03090at 738.882 kb on - strand, within HMPREF1078_RS03090at 738.883 kb on + strand, within HMPREF1078_RS03090at 738.883 kb on + strand, within HMPREF1078_RS03090at 738.883 kb on + strand, within HMPREF1078_RS03090at 738.883 kb on + strand, within HMPREF1078_RS03090at 738.884 kb on - strand, within HMPREF1078_RS03090at 738.884 kb on - strand, within HMPREF1078_RS03090at 738.884 kb on - strand, within HMPREF1078_RS03090at 738.884 kb on - strand, within HMPREF1078_RS03090at 738.884 kb on - strand, within HMPREF1078_RS03090at 738.884 kb on - strand, within HMPREF1078_RS03090at 738.977 kb on + strand, within HMPREF1078_RS03090at 739.007 kb on + strand, within HMPREF1078_RS03090at 739.048 kb on + strand, within HMPREF1078_RS03090at 739.048 kb on + strand, within HMPREF1078_RS03090at 739.049 kb on - strand, within HMPREF1078_RS03090at 739.073 kb on + strandat 739.074 kb on - strandat 739.074 kb on - strandat 739.074 kb on - strandat 739.074 kb on - strandat 739.088 kb on + strandat 739.088 kb on + strandat 739.089 kb on - strandat 739.089 kb on - strandat 739.097 kb on - strandat 739.120 kb on + strandat 739.121 kb on - strandat 739.121 kb on - strandat 739.190 kb on - strandat 739.225 kb on - strandat 739.246 kb on + strandat 739.296 kb on + strand, within HMPREF1078_RS19720at 739.372 kb on + strand, within HMPREF1078_RS19720at 739.373 kb on - strand, within HMPREF1078_RS19720at 739.457 kb on - strandat 739.487 kb on - strandat 739.494 kb on - strand, within HMPREF1078_RS03095at 739.779 kb on - strandat 739.834 kb on - strandat 739.860 kb on + strandat 739.907 kb on - strandat 739.908 kb on + strandat 739.914 kb on + strandat 739.921 kb on + strandat 739.972 kb on + strandat 739.973 kb on - strandat 740.017 kb on - strand, within HMPREF1078_RS03100at 740.090 kb on + strand, within HMPREF1078_RS03100at 740.091 kb on - strand, within HMPREF1078_RS03100at 740.109 kb on - strand, within HMPREF1078_RS03100at 740.171 kb on + strandat 740.206 kb on - strandat 740.229 kb on + strandat 740.229 kb on + strandat 740.241 kb on - strandat 740.271 kb on - strandat 740.356 kb on + strandat 740.378 kb on - strandat 740.383 kb on + strandat 740.386 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 1 x (C)
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738,253 + -1.2
738,254 - -0.0
738,281 - -3.9
738,284 + +0.5
738,285 - -2.9
738,297 + -1.2
738,298 - -0.7
738,298 - -0.3
738,298 - -3.0
738,329 - +0.3
738,339 + +0.0
738,342 - +0.3
738,342 - -1.0
738,342 - -0.0
738,421 + -3.2
738,437 - +0.1
738,440 - -2.1
738,444 - +0.1
738,456 + -0.5
738,456 + -0.9
738,456 + +0.9
738,457 - -0.7
738,506 - +0.4
738,506 - -0.2
738,565 - +0.5
738,565 - -0.4
738,578 - +0.6
738,622 + +1.3
738,646 - -0.2
738,665 + -2.6
738,668 + -3.7
738,676 + -2.1
738,676 + -1.5
738,737 + HMPREF1078_RS03090 0.20 -4.5
738,738 - HMPREF1078_RS03090 0.20 -2.3
738,738 - HMPREF1078_RS03090 0.20 -1.6
738,801 - HMPREF1078_RS03090 0.34 -1.8
738,807 - HMPREF1078_RS03090 0.36 -2.6
738,807 - HMPREF1078_RS03090 0.36 -1.7
738,827 + HMPREF1078_RS03090 0.40 -4.6
738,827 + HMPREF1078_RS03090 0.40 -4.0
738,828 - HMPREF1078_RS03090 0.40 -1.9
738,880 + HMPREF1078_RS03090 0.51 -2.3
738,880 + HMPREF1078_RS03090 0.51 -3.4
738,880 + HMPREF1078_RS03090 0.51 -3.8
738,881 - HMPREF1078_RS03090 0.52 -2.5
738,882 - HMPREF1078_RS03090 0.52 -2.7
738,883 + HMPREF1078_RS03090 0.52 +0.3
738,883 + HMPREF1078_RS03090 0.52 -2.6
738,883 + HMPREF1078_RS03090 0.52 -2.6
738,883 + HMPREF1078_RS03090 0.52 -1.9
738,884 - HMPREF1078_RS03090 0.52 -2.7
738,884 - HMPREF1078_RS03090 0.52 -1.9
738,884 - HMPREF1078_RS03090 0.52 -3.2
738,884 - HMPREF1078_RS03090 0.52 -2.8
738,884 - HMPREF1078_RS03090 0.52 -4.3
738,884 - HMPREF1078_RS03090 0.52 -1.4
738,977 + HMPREF1078_RS03090 0.73 -4.6
739,007 + HMPREF1078_RS03090 0.79 -2.6
739,048 + HMPREF1078_RS03090 0.88 -3.9
739,048 + HMPREF1078_RS03090 0.88 -4.0
739,049 - HMPREF1078_RS03090 0.88 -2.5
739,073 + -4.9
739,074 - -1.0
739,074 - -2.8
739,074 - -3.0
739,074 - -2.6
739,088 + -2.5
739,088 + -2.9
739,089 - -0.7
739,089 - -1.2
739,097 - -1.9
739,120 + -4.0
739,121 - -0.7
739,121 - +1.7
739,190 - +1.1
739,225 - -0.1
739,246 + -0.3
739,296 + HMPREF1078_RS19720 0.26 +0.1
739,372 + HMPREF1078_RS19720 0.65 +1.9
739,373 - HMPREF1078_RS19720 0.66 +0.6
739,457 - -0.3
739,487 - -0.4
739,494 - HMPREF1078_RS03095 0.12 +0.6
739,779 - -0.6
739,834 - -0.7
739,860 + -0.6
739,907 - -0.4
739,908 + +0.3
739,914 + -0.1
739,921 + -0.3
739,972 + +0.1
739,973 - -0.1
740,017 - HMPREF1078_RS03100 0.20 +0.3
740,090 + HMPREF1078_RS03100 0.55 -0.3
740,091 - HMPREF1078_RS03100 0.56 +0.5
740,109 - HMPREF1078_RS03100 0.65 +0.6
740,171 + +0.1
740,206 - -1.2
740,229 + -1.3
740,229 + +0.4
740,241 - -1.4
740,271 - -1.0
740,356 + +0.6
740,378 - +0.4
740,383 + +1.5
740,386 - +0.3

Or see this region's nucleotide sequence