Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS09115

Experiment: LB 1 x (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1078_RS09110 and HMPREF1078_RS09115 overlap by 4 nucleotidesHMPREF1078_RS09115 and HMPREF1078_RS09120 are separated by 13 nucleotidesHMPREF1078_RS09120 and HMPREF1078_RS09125 are separated by 11 nucleotides HMPREF1078_RS09110: HMPREF1078_RS09110 - PcfJ domain-containing protein, at 418,468 to 419,799 _RS09110 HMPREF1078_RS09115: HMPREF1078_RS09115 - PcfK-like family protein, at 419,796 to 420,212 _RS09115 HMPREF1078_RS09120: HMPREF1078_RS09120 - hypothetical protein, at 420,226 to 420,447 _RS09120 HMPREF1078_RS09125: HMPREF1078_RS09125 - hypothetical protein, at 420,459 to 420,674 _RS09125 Position (kb) 419 420 421Strain fitness (log2 ratio) -2 -1 0 1 2 3at 418.900 kb on + strand, within HMPREF1078_RS09110at 419.001 kb on + strand, within HMPREF1078_RS09110at 419.001 kb on + strand, within HMPREF1078_RS09110at 419.002 kb on - strand, within HMPREF1078_RS09110at 419.002 kb on - strand, within HMPREF1078_RS09110at 419.009 kb on + strand, within HMPREF1078_RS09110at 419.035 kb on + strand, within HMPREF1078_RS09110at 419.035 kb on + strand, within HMPREF1078_RS09110at 419.066 kb on + strand, within HMPREF1078_RS09110at 419.262 kb on - strand, within HMPREF1078_RS09110at 419.291 kb on + strand, within HMPREF1078_RS09110at 419.291 kb on + strand, within HMPREF1078_RS09110at 419.291 kb on + strand, within HMPREF1078_RS09110at 419.292 kb on - strand, within HMPREF1078_RS09110at 419.294 kb on - strand, within HMPREF1078_RS09110at 419.312 kb on - strand, within HMPREF1078_RS09110at 419.496 kb on - strand, within HMPREF1078_RS09110at 419.540 kb on + strand, within HMPREF1078_RS09110at 419.540 kb on + strand, within HMPREF1078_RS09110at 419.722 kb on + strandat 419.723 kb on - strandat 419.779 kb on + strandat 419.805 kb on + strandat 419.805 kb on + strandat 419.806 kb on - strandat 419.893 kb on + strand, within HMPREF1078_RS09115at 420.010 kb on + strand, within HMPREF1078_RS09115at 420.013 kb on + strand, within HMPREF1078_RS09115at 420.014 kb on - strand, within HMPREF1078_RS09115at 420.076 kb on + strand, within HMPREF1078_RS09115at 420.076 kb on + strand, within HMPREF1078_RS09115at 420.077 kb on - strand, within HMPREF1078_RS09115at 420.131 kb on + strand, within HMPREF1078_RS09115at 420.172 kb on + strandat 420.172 kb on + strandat 420.172 kb on + strandat 420.172 kb on + strandat 420.173 kb on - strandat 420.173 kb on - strandat 420.176 kb on + strandat 420.176 kb on + strandat 420.176 kb on + strandat 420.176 kb on + strandat 420.176 kb on + strandat 420.176 kb on + strandat 420.176 kb on + strandat 420.176 kb on + strandat 420.176 kb on + strandat 420.177 kb on - strandat 420.177 kb on - strandat 420.177 kb on - strandat 420.177 kb on - strandat 420.177 kb on - strandat 420.177 kb on - strandat 420.177 kb on - strandat 420.177 kb on - strandat 420.178 kb on + strandat 420.178 kb on + strandat 420.178 kb on + strandat 420.178 kb on + strandat 420.179 kb on - strandat 420.179 kb on - strandat 420.179 kb on - strandat 420.179 kb on - strandat 420.179 kb on - strandat 420.179 kb on - strandat 420.180 kb on + strandat 420.180 kb on + strandat 420.180 kb on + strandat 420.181 kb on - strandat 420.181 kb on - strandat 420.214 kb on - strandat 420.233 kb on - strandat 420.245 kb on - strandat 420.362 kb on + strand, within HMPREF1078_RS09120at 420.362 kb on + strand, within HMPREF1078_RS09120at 420.362 kb on + strand, within HMPREF1078_RS09120at 420.375 kb on + strand, within HMPREF1078_RS09120at 420.377 kb on + strand, within HMPREF1078_RS09120at 420.378 kb on - strand, within HMPREF1078_RS09120at 420.401 kb on + strand, within HMPREF1078_RS09120at 420.402 kb on - strand, within HMPREF1078_RS09120at 420.404 kb on + strand, within HMPREF1078_RS09120at 420.472 kb on - strandat 420.522 kb on + strand, within HMPREF1078_RS09125at 420.528 kb on + strand, within HMPREF1078_RS09125at 420.529 kb on - strand, within HMPREF1078_RS09125at 420.622 kb on - strand, within HMPREF1078_RS09125at 420.674 kb on + strandat 420.830 kb on + strandat 420.939 kb on - strandat 420.979 kb on + strandat 421.126 kb on + strandat 421.126 kb on + strandat 421.127 kb on - strandat 421.127 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB 1 x (C)
remove
418,900 + HMPREF1078_RS09110 0.32 -0.7
419,001 + HMPREF1078_RS09110 0.40 -0.8
419,001 + HMPREF1078_RS09110 0.40 -0.3
419,002 - HMPREF1078_RS09110 0.40 -0.5
419,002 - HMPREF1078_RS09110 0.40 +0.1
419,009 + HMPREF1078_RS09110 0.41 -1.1
419,035 + HMPREF1078_RS09110 0.43 -0.0
419,035 + HMPREF1078_RS09110 0.43 +0.3
419,066 + HMPREF1078_RS09110 0.45 +0.1
419,262 - HMPREF1078_RS09110 0.60 -0.5
419,291 + HMPREF1078_RS09110 0.62 -1.1
419,291 + HMPREF1078_RS09110 0.62 +0.3
419,291 + HMPREF1078_RS09110 0.62 -0.7
419,292 - HMPREF1078_RS09110 0.62 +0.6
419,294 - HMPREF1078_RS09110 0.62 +0.6
419,312 - HMPREF1078_RS09110 0.63 -0.0
419,496 - HMPREF1078_RS09110 0.77 +0.1
419,540 + HMPREF1078_RS09110 0.80 +1.3
419,540 + HMPREF1078_RS09110 0.80 -0.1
419,722 + -0.2
419,723 - +0.7
419,779 + -0.8
419,805 + -0.2
419,805 + -1.2
419,806 - -1.4
419,893 + HMPREF1078_RS09115 0.23 +0.5
420,010 + HMPREF1078_RS09115 0.51 +1.0
420,013 + HMPREF1078_RS09115 0.52 +2.0
420,014 - HMPREF1078_RS09115 0.52 -2.2
420,076 + HMPREF1078_RS09115 0.67 +0.5
420,076 + HMPREF1078_RS09115 0.67 -2.4
420,077 - HMPREF1078_RS09115 0.67 +2.9
420,131 + HMPREF1078_RS09115 0.80 +0.1
420,172 + -1.7
420,172 + -0.1
420,172 + -0.8
420,172 + -1.3
420,173 - +0.7
420,173 - -1.0
420,176 + +1.1
420,176 + -0.9
420,176 + -0.2
420,176 + -1.9
420,176 + -0.4
420,176 + -0.2
420,176 + +2.3
420,176 + +0.6
420,176 + -0.8
420,177 - -1.1
420,177 - +0.5
420,177 - -1.5
420,177 - +0.2
420,177 - -0.7
420,177 - -1.7
420,177 - -1.2
420,177 - -0.7
420,178 + -0.6
420,178 + -0.3
420,178 + -0.1
420,178 + +0.3
420,179 - -0.4
420,179 - -2.3
420,179 - -0.2
420,179 - -0.0
420,179 - -0.4
420,179 - -1.3
420,180 + -1.6
420,180 + -0.0
420,180 + -0.9
420,181 - +0.5
420,181 - +0.4
420,214 - -0.5
420,233 - +0.6
420,245 - +0.2
420,362 + HMPREF1078_RS09120 0.61 -0.6
420,362 + HMPREF1078_RS09120 0.61 -0.9
420,362 + HMPREF1078_RS09120 0.61 -1.0
420,375 + HMPREF1078_RS09120 0.67 +0.4
420,377 + HMPREF1078_RS09120 0.68 -0.0
420,378 - HMPREF1078_RS09120 0.68 +1.3
420,401 + HMPREF1078_RS09120 0.79 -0.2
420,402 - HMPREF1078_RS09120 0.79 +1.1
420,404 + HMPREF1078_RS09120 0.80 -1.0
420,472 - -0.0
420,522 + HMPREF1078_RS09125 0.29 -2.5
420,528 + HMPREF1078_RS09125 0.32 -1.1
420,529 - HMPREF1078_RS09125 0.32 +0.1
420,622 - HMPREF1078_RS09125 0.75 -0.9
420,674 + -0.1
420,830 + -0.9
420,939 - -0.0
420,979 + -0.5
421,126 + +0.7
421,126 + +0.3
421,127 - -1.4
421,127 - +1.5

Or see this region's nucleotide sequence