Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS04255

Experiment: LB 1 x (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS04250 and HMPREF1078_RS04255 are separated by 22 nucleotidesHMPREF1078_RS04255 and HMPREF1078_RS04260 are separated by 10 nucleotidesHMPREF1078_RS04260 and HMPREF1078_RS04265 are separated by 15 nucleotides HMPREF1078_RS04250: HMPREF1078_RS04250 - di-heme oxidoredictase family protein, at 72,472 to 73,905 _RS04250 HMPREF1078_RS04255: HMPREF1078_RS04255 - porin, at 73,928 to 75,142 _RS04255 HMPREF1078_RS04260: HMPREF1078_RS04260 - hypothetical protein, at 75,153 to 75,863 _RS04260 HMPREF1078_RS04265: HMPREF1078_RS04265 - Rid family hydrolase, at 75,879 to 77,033 _RS04265 Position (kb) 73 74 75 76Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 72.946 kb on - strand, within HMPREF1078_RS04250at 73.001 kb on - strand, within HMPREF1078_RS04250at 73.001 kb on - strand, within HMPREF1078_RS04250at 73.007 kb on + strand, within HMPREF1078_RS04250at 73.115 kb on - strand, within HMPREF1078_RS04250at 73.179 kb on + strand, within HMPREF1078_RS04250at 73.198 kb on + strand, within HMPREF1078_RS04250at 73.199 kb on - strand, within HMPREF1078_RS04250at 73.199 kb on - strand, within HMPREF1078_RS04250at 73.200 kb on + strand, within HMPREF1078_RS04250at 73.376 kb on - strand, within HMPREF1078_RS04250at 73.424 kb on - strand, within HMPREF1078_RS04250at 73.461 kb on - strand, within HMPREF1078_RS04250at 73.604 kb on + strand, within HMPREF1078_RS04250at 73.604 kb on + strand, within HMPREF1078_RS04250at 73.605 kb on - strand, within HMPREF1078_RS04250at 73.605 kb on - strand, within HMPREF1078_RS04250at 73.612 kb on + strand, within HMPREF1078_RS04250at 73.625 kb on + strand, within HMPREF1078_RS04250at 73.675 kb on + strand, within HMPREF1078_RS04250at 73.675 kb on + strand, within HMPREF1078_RS04250at 73.675 kb on + strand, within HMPREF1078_RS04250at 73.676 kb on - strand, within HMPREF1078_RS04250at 73.676 kb on - strand, within HMPREF1078_RS04250at 73.758 kb on + strand, within HMPREF1078_RS04250at 73.759 kb on - strand, within HMPREF1078_RS04250at 73.909 kb on - strandat 73.909 kb on - strandat 73.914 kb on + strandat 73.942 kb on - strandat 73.960 kb on - strandat 73.962 kb on + strandat 73.963 kb on - strandat 73.992 kb on - strandat 74.084 kb on + strand, within HMPREF1078_RS04255at 74.084 kb on + strand, within HMPREF1078_RS04255at 74.086 kb on + strand, within HMPREF1078_RS04255at 74.087 kb on - strand, within HMPREF1078_RS04255at 74.087 kb on - strand, within HMPREF1078_RS04255at 74.087 kb on - strand, within HMPREF1078_RS04255at 74.087 kb on - strand, within HMPREF1078_RS04255at 74.107 kb on + strand, within HMPREF1078_RS04255at 74.108 kb on - strand, within HMPREF1078_RS04255at 74.108 kb on - strand, within HMPREF1078_RS04255at 74.117 kb on + strand, within HMPREF1078_RS04255at 74.120 kb on + strand, within HMPREF1078_RS04255at 74.161 kb on + strand, within HMPREF1078_RS04255at 74.161 kb on + strand, within HMPREF1078_RS04255at 74.161 kb on + strand, within HMPREF1078_RS04255at 74.162 kb on - strand, within HMPREF1078_RS04255at 74.162 kb on - strand, within HMPREF1078_RS04255at 74.189 kb on - strand, within HMPREF1078_RS04255at 74.190 kb on - strand, within HMPREF1078_RS04255at 74.298 kb on + strand, within HMPREF1078_RS04255at 74.322 kb on + strand, within HMPREF1078_RS04255at 74.368 kb on + strand, within HMPREF1078_RS04255at 74.369 kb on - strand, within HMPREF1078_RS04255at 74.502 kb on + strand, within HMPREF1078_RS04255at 74.503 kb on - strand, within HMPREF1078_RS04255at 74.610 kb on - strand, within HMPREF1078_RS04255at 74.610 kb on - strand, within HMPREF1078_RS04255at 74.610 kb on - strand, within HMPREF1078_RS04255at 74.627 kb on + strand, within HMPREF1078_RS04255at 74.627 kb on + strand, within HMPREF1078_RS04255at 74.627 kb on + strand, within HMPREF1078_RS04255at 74.628 kb on - strand, within HMPREF1078_RS04255at 74.645 kb on - strand, within HMPREF1078_RS04255at 74.645 kb on - strand, within HMPREF1078_RS04255at 74.687 kb on - strand, within HMPREF1078_RS04255at 74.741 kb on - strand, within HMPREF1078_RS04255at 74.741 kb on - strand, within HMPREF1078_RS04255at 74.815 kb on + strand, within HMPREF1078_RS04255at 74.816 kb on - strand, within HMPREF1078_RS04255at 74.858 kb on + strand, within HMPREF1078_RS04255at 74.858 kb on + strand, within HMPREF1078_RS04255at 74.860 kb on + strand, within HMPREF1078_RS04255at 74.910 kb on + strand, within HMPREF1078_RS04255at 74.910 kb on + strand, within HMPREF1078_RS04255at 74.911 kb on - strand, within HMPREF1078_RS04255at 75.035 kb on + strandat 75.036 kb on - strandat 75.036 kb on - strandat 75.036 kb on - strandat 75.093 kb on + strandat 75.132 kb on - strandat 75.232 kb on + strand, within HMPREF1078_RS04260at 75.232 kb on + strand, within HMPREF1078_RS04260at 75.233 kb on - strand, within HMPREF1078_RS04260at 75.234 kb on + strand, within HMPREF1078_RS04260at 75.234 kb on + strand, within HMPREF1078_RS04260at 75.235 kb on - strand, within HMPREF1078_RS04260at 75.496 kb on - strand, within HMPREF1078_RS04260at 75.508 kb on - strand, within HMPREF1078_RS04260at 75.646 kb on - strand, within HMPREF1078_RS04260at 75.873 kb on + strandat 75.874 kb on - strandat 75.877 kb on - strandat 75.984 kb on - strandat 76.035 kb on + strand, within HMPREF1078_RS04265at 76.036 kb on - strand, within HMPREF1078_RS04265at 76.036 kb on - strand, within HMPREF1078_RS04265at 76.036 kb on - strand, within HMPREF1078_RS04265at 76.036 kb on - strand, within HMPREF1078_RS04265at 76.060 kb on + strand, within HMPREF1078_RS04265at 76.093 kb on - strand, within HMPREF1078_RS04265

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 1 x (C)
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72,946 - HMPREF1078_RS04250 0.33 +0.5
73,001 - HMPREF1078_RS04250 0.37 -1.1
73,001 - HMPREF1078_RS04250 0.37 +0.2
73,007 + HMPREF1078_RS04250 0.37 +0.5
73,115 - HMPREF1078_RS04250 0.45 -0.1
73,179 + HMPREF1078_RS04250 0.49 -1.7
73,198 + HMPREF1078_RS04250 0.51 +0.2
73,199 - HMPREF1078_RS04250 0.51 +0.7
73,199 - HMPREF1078_RS04250 0.51 +0.2
73,200 + HMPREF1078_RS04250 0.51 -0.3
73,376 - HMPREF1078_RS04250 0.63 -0.2
73,424 - HMPREF1078_RS04250 0.66 -0.5
73,461 - HMPREF1078_RS04250 0.69 +0.0
73,604 + HMPREF1078_RS04250 0.79 -1.7
73,604 + HMPREF1078_RS04250 0.79 -0.4
73,605 - HMPREF1078_RS04250 0.79 +0.5
73,605 - HMPREF1078_RS04250 0.79 -0.1
73,612 + HMPREF1078_RS04250 0.79 -0.6
73,625 + HMPREF1078_RS04250 0.80 +0.2
73,675 + HMPREF1078_RS04250 0.84 +1.4
73,675 + HMPREF1078_RS04250 0.84 -2.7
73,675 + HMPREF1078_RS04250 0.84 +0.4
73,676 - HMPREF1078_RS04250 0.84 +0.2
73,676 - HMPREF1078_RS04250 0.84 -0.1
73,758 + HMPREF1078_RS04250 0.90 +0.1
73,759 - HMPREF1078_RS04250 0.90 +0.2
73,909 - -0.7
73,909 - -0.7
73,914 + +1.4
73,942 - +2.0
73,960 - -1.9
73,962 + -1.3
73,963 - +0.4
73,992 - -0.1
74,084 + HMPREF1078_RS04255 0.13 -0.5
74,084 + HMPREF1078_RS04255 0.13 -1.2
74,086 + HMPREF1078_RS04255 0.13 +0.0
74,087 - HMPREF1078_RS04255 0.13 -0.1
74,087 - HMPREF1078_RS04255 0.13 -0.9
74,087 - HMPREF1078_RS04255 0.13 +0.4
74,087 - HMPREF1078_RS04255 0.13 -0.1
74,107 + HMPREF1078_RS04255 0.15 -0.6
74,108 - HMPREF1078_RS04255 0.15 +0.1
74,108 - HMPREF1078_RS04255 0.15 -0.2
74,117 + HMPREF1078_RS04255 0.16 -0.8
74,120 + HMPREF1078_RS04255 0.16 +0.0
74,161 + HMPREF1078_RS04255 0.19 -1.5
74,161 + HMPREF1078_RS04255 0.19 +0.1
74,161 + HMPREF1078_RS04255 0.19 -0.1
74,162 - HMPREF1078_RS04255 0.19 -0.3
74,162 - HMPREF1078_RS04255 0.19 +0.9
74,189 - HMPREF1078_RS04255 0.21 +0.8
74,190 - HMPREF1078_RS04255 0.22 -1.0
74,298 + HMPREF1078_RS04255 0.30 +0.1
74,322 + HMPREF1078_RS04255 0.32 +0.5
74,368 + HMPREF1078_RS04255 0.36 -0.6
74,369 - HMPREF1078_RS04255 0.36 +0.6
74,502 + HMPREF1078_RS04255 0.47 -0.6
74,503 - HMPREF1078_RS04255 0.47 -0.4
74,610 - HMPREF1078_RS04255 0.56 +1.4
74,610 - HMPREF1078_RS04255 0.56 +0.4
74,610 - HMPREF1078_RS04255 0.56 +0.1
74,627 + HMPREF1078_RS04255 0.58 -0.0
74,627 + HMPREF1078_RS04255 0.58 -0.2
74,627 + HMPREF1078_RS04255 0.58 -0.6
74,628 - HMPREF1078_RS04255 0.58 +0.4
74,645 - HMPREF1078_RS04255 0.59 -0.6
74,645 - HMPREF1078_RS04255 0.59 +0.6
74,687 - HMPREF1078_RS04255 0.62 -0.2
74,741 - HMPREF1078_RS04255 0.67 -1.0
74,741 - HMPREF1078_RS04255 0.67 +1.0
74,815 + HMPREF1078_RS04255 0.73 +0.6
74,816 - HMPREF1078_RS04255 0.73 -0.4
74,858 + HMPREF1078_RS04255 0.77 -0.2
74,858 + HMPREF1078_RS04255 0.77 -1.0
74,860 + HMPREF1078_RS04255 0.77 -0.4
74,910 + HMPREF1078_RS04255 0.81 -0.5
74,910 + HMPREF1078_RS04255 0.81 -1.9
74,911 - HMPREF1078_RS04255 0.81 -1.3
75,035 + -1.9
75,036 - +2.5
75,036 - -0.5
75,036 - +0.5
75,093 + -0.2
75,132 - -0.4
75,232 + HMPREF1078_RS04260 0.11 -0.5
75,232 + HMPREF1078_RS04260 0.11 +0.1
75,233 - HMPREF1078_RS04260 0.11 +0.9
75,234 + HMPREF1078_RS04260 0.11 -0.5
75,234 + HMPREF1078_RS04260 0.11 -1.2
75,235 - HMPREF1078_RS04260 0.12 +0.4
75,496 - HMPREF1078_RS04260 0.48 -0.8
75,508 - HMPREF1078_RS04260 0.50 -0.7
75,646 - HMPREF1078_RS04260 0.69 -1.2
75,873 + -1.3
75,874 - -0.3
75,877 - +0.6
75,984 - -1.3
76,035 + HMPREF1078_RS04265 0.14 -0.3
76,036 - HMPREF1078_RS04265 0.14 -2.9
76,036 - HMPREF1078_RS04265 0.14 +0.9
76,036 - HMPREF1078_RS04265 0.14 +1.8
76,036 - HMPREF1078_RS04265 0.14 +0.6
76,060 + HMPREF1078_RS04265 0.16 +0.4
76,093 - HMPREF1078_RS04265 0.19 -0.3

Or see this region's nucleotide sequence