Experiment: LB 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02030 and HMPREF1078_RS02035 are separated by 103 nucleotides HMPREF1078_RS02035 and HMPREF1078_RS02040 are separated by 11 nucleotides HMPREF1078_RS02040 and HMPREF1078_RS02045 are separated by 13 nucleotides HMPREF1078_RS02045 and HMPREF1078_RS02050 overlap by 4 nucleotides
HMPREF1078_RS02030: HMPREF1078_RS02030 - malate dehydrogenase, at 499,887 to 500,888
_RS02030
HMPREF1078_RS02035: HMPREF1078_RS02035 - chloramphenicol acetyltransferase, at 500,992 to 501,624
_RS02035
HMPREF1078_RS02040: HMPREF1078_RS02040 - prolyl oligopeptidase family serine peptidase, at 501,636 to 504,128
_RS02040
HMPREF1078_RS02045: HMPREF1078_RS02045 - class I SAM-dependent methyltransferase, at 504,142 to 504,726
_RS02045
HMPREF1078_RS02050: HMPREF1078_RS02050 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, at 504,723 to 505,532
_RS02050
Position (kb) 501
502
503
504
505 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 500.696 kb on + strand, within HMPREF1078_RS02030 at 500.696 kb on + strand, within HMPREF1078_RS02030 at 500.752 kb on + strand, within HMPREF1078_RS02030 at 500.793 kb on + strand at 500.883 kb on - strand at 500.894 kb on + strand at 500.894 kb on + strand at 500.895 kb on - strand at 500.899 kb on - strand at 500.914 kb on - strand at 500.923 kb on + strand at 500.923 kb on + strand at 500.923 kb on + strand at 500.927 kb on + strand at 500.927 kb on + strand at 500.927 kb on + strand at 500.928 kb on - strand at 500.928 kb on - strand at 500.928 kb on - strand at 500.976 kb on + strand at 500.977 kb on - strand at 500.994 kb on - strand at 501.054 kb on + strand at 501.092 kb on + strand, within HMPREF1078_RS02035 at 501.099 kb on + strand, within HMPREF1078_RS02035 at 501.100 kb on - strand, within HMPREF1078_RS02035 at 501.130 kb on - strand, within HMPREF1078_RS02035 at 501.196 kb on + strand, within HMPREF1078_RS02035 at 501.213 kb on + strand, within HMPREF1078_RS02035 at 501.214 kb on - strand, within HMPREF1078_RS02035 at 501.214 kb on - strand, within HMPREF1078_RS02035 at 501.226 kb on - strand, within HMPREF1078_RS02035 at 501.265 kb on - strand, within HMPREF1078_RS02035 at 501.275 kb on - strand, within HMPREF1078_RS02035 at 501.321 kb on - strand, within HMPREF1078_RS02035 at 501.364 kb on - strand, within HMPREF1078_RS02035 at 501.375 kb on + strand, within HMPREF1078_RS02035 at 501.375 kb on + strand, within HMPREF1078_RS02035 at 501.376 kb on - strand, within HMPREF1078_RS02035 at 501.385 kb on - strand, within HMPREF1078_RS02035 at 501.385 kb on - strand, within HMPREF1078_RS02035 at 501.390 kb on - strand, within HMPREF1078_RS02035 at 501.413 kb on - strand, within HMPREF1078_RS02035 at 501.419 kb on - strand, within HMPREF1078_RS02035 at 501.471 kb on - strand, within HMPREF1078_RS02035 at 501.498 kb on + strand, within HMPREF1078_RS02035 at 501.499 kb on - strand, within HMPREF1078_RS02035 at 501.499 kb on - strand, within HMPREF1078_RS02035 at 501.517 kb on - strand, within HMPREF1078_RS02035 at 501.517 kb on - strand, within HMPREF1078_RS02035 at 501.538 kb on - strand, within HMPREF1078_RS02035 at 501.692 kb on - strand at 501.742 kb on + strand at 501.771 kb on + strand at 501.771 kb on + strand at 501.772 kb on - strand at 501.801 kb on + strand at 501.914 kb on + strand, within HMPREF1078_RS02040 at 501.915 kb on - strand, within HMPREF1078_RS02040 at 501.915 kb on - strand, within HMPREF1078_RS02040 at 501.938 kb on + strand, within HMPREF1078_RS02040 at 501.959 kb on + strand, within HMPREF1078_RS02040 at 501.960 kb on - strand, within HMPREF1078_RS02040 at 501.979 kb on - strand, within HMPREF1078_RS02040 at 502.007 kb on - strand, within HMPREF1078_RS02040 at 502.007 kb on - strand, within HMPREF1078_RS02040 at 502.010 kb on + strand, within HMPREF1078_RS02040 at 502.011 kb on - strand, within HMPREF1078_RS02040 at 502.011 kb on - strand, within HMPREF1078_RS02040 at 502.075 kb on + strand, within HMPREF1078_RS02040 at 502.075 kb on + strand, within HMPREF1078_RS02040 at 502.076 kb on - strand, within HMPREF1078_RS02040 at 502.097 kb on - strand, within HMPREF1078_RS02040 at 502.265 kb on - strand, within HMPREF1078_RS02040 at 502.288 kb on + strand, within HMPREF1078_RS02040 at 502.288 kb on + strand, within HMPREF1078_RS02040 at 502.289 kb on - strand, within HMPREF1078_RS02040 at 502.289 kb on - strand, within HMPREF1078_RS02040 at 502.289 kb on - strand, within HMPREF1078_RS02040 at 502.289 kb on - strand, within HMPREF1078_RS02040 at 502.349 kb on - strand, within HMPREF1078_RS02040 at 502.517 kb on + strand, within HMPREF1078_RS02040 at 502.531 kb on + strand, within HMPREF1078_RS02040 at 502.531 kb on + strand, within HMPREF1078_RS02040 at 502.531 kb on + strand, within HMPREF1078_RS02040 at 502.532 kb on - strand, within HMPREF1078_RS02040 at 502.532 kb on - strand, within HMPREF1078_RS02040 at 502.673 kb on - strand, within HMPREF1078_RS02040 at 502.706 kb on + strand, within HMPREF1078_RS02040 at 502.707 kb on - strand, within HMPREF1078_RS02040 at 502.707 kb on - strand, within HMPREF1078_RS02040 at 502.709 kb on - strand, within HMPREF1078_RS02040 at 502.802 kb on - strand, within HMPREF1078_RS02040 at 502.822 kb on + strand, within HMPREF1078_RS02040 at 502.833 kb on + strand, within HMPREF1078_RS02040 at 502.891 kb on - strand, within HMPREF1078_RS02040 at 502.936 kb on + strand, within HMPREF1078_RS02040 at 502.936 kb on + strand, within HMPREF1078_RS02040 at 502.988 kb on + strand, within HMPREF1078_RS02040 at 502.989 kb on - strand, within HMPREF1078_RS02040 at 502.990 kb on + strand, within HMPREF1078_RS02040 at 503.023 kb on + strand, within HMPREF1078_RS02040 at 503.024 kb on - strand, within HMPREF1078_RS02040 at 503.024 kb on - strand, within HMPREF1078_RS02040 at 503.082 kb on - strand, within HMPREF1078_RS02040 at 503.093 kb on + strand, within HMPREF1078_RS02040 at 503.093 kb on + strand, within HMPREF1078_RS02040 at 503.094 kb on - strand, within HMPREF1078_RS02040 at 503.094 kb on - strand, within HMPREF1078_RS02040 at 503.118 kb on + strand, within HMPREF1078_RS02040 at 503.152 kb on - strand, within HMPREF1078_RS02040 at 503.220 kb on - strand, within HMPREF1078_RS02040 at 503.220 kb on - strand, within HMPREF1078_RS02040 at 503.240 kb on + strand, within HMPREF1078_RS02040 at 503.240 kb on + strand, within HMPREF1078_RS02040 at 503.240 kb on + strand, within HMPREF1078_RS02040 at 503.240 kb on + strand, within HMPREF1078_RS02040 at 503.241 kb on - strand, within HMPREF1078_RS02040 at 503.241 kb on - strand, within HMPREF1078_RS02040 at 503.243 kb on - strand, within HMPREF1078_RS02040 at 503.374 kb on + strand, within HMPREF1078_RS02040 at 503.374 kb on + strand, within HMPREF1078_RS02040 at 503.375 kb on - strand, within HMPREF1078_RS02040 at 503.414 kb on + strand, within HMPREF1078_RS02040 at 503.415 kb on - strand, within HMPREF1078_RS02040 at 503.415 kb on - strand, within HMPREF1078_RS02040 at 503.415 kb on - strand, within HMPREF1078_RS02040 at 503.517 kb on + strand, within HMPREF1078_RS02040 at 503.517 kb on + strand, within HMPREF1078_RS02040 at 503.518 kb on - strand, within HMPREF1078_RS02040 at 503.518 kb on - strand, within HMPREF1078_RS02040 at 503.518 kb on - strand, within HMPREF1078_RS02040 at 503.521 kb on + strand, within HMPREF1078_RS02040 at 503.522 kb on - strand, within HMPREF1078_RS02040 at 503.613 kb on + strand, within HMPREF1078_RS02040 at 503.698 kb on - strand, within HMPREF1078_RS02040 at 503.707 kb on + strand, within HMPREF1078_RS02040 at 503.753 kb on + strand, within HMPREF1078_RS02040 at 503.777 kb on + strand, within HMPREF1078_RS02040 at 503.826 kb on + strand, within HMPREF1078_RS02040 at 503.839 kb on + strand, within HMPREF1078_RS02040 at 503.839 kb on + strand, within HMPREF1078_RS02040 at 503.854 kb on + strand, within HMPREF1078_RS02040 at 503.855 kb on - strand, within HMPREF1078_RS02040 at 504.023 kb on + strand at 504.044 kb on - strand at 504.044 kb on - strand at 504.044 kb on - strand at 504.107 kb on + strand at 504.130 kb on + strand at 504.130 kb on + strand at 504.130 kb on + strand at 504.131 kb on - strand at 504.131 kb on - strand at 504.131 kb on - strand at 504.131 kb on - strand at 504.131 kb on - strand at 504.137 kb on + strand at 504.137 kb on + strand at 504.137 kb on + strand at 504.139 kb on + strand at 504.175 kb on - strand at 504.176 kb on + strand at 504.177 kb on - strand at 504.177 kb on - strand at 504.420 kb on + strand, within HMPREF1078_RS02045 at 504.421 kb on - strand, within HMPREF1078_RS02045 at 504.422 kb on + strand, within HMPREF1078_RS02045 at 504.422 kb on + strand, within HMPREF1078_RS02045 at 504.422 kb on + strand, within HMPREF1078_RS02045 at 504.423 kb on - strand, within HMPREF1078_RS02045 at 504.442 kb on + strand, within HMPREF1078_RS02045 at 504.452 kb on - strand, within HMPREF1078_RS02045 at 504.488 kb on + strand, within HMPREF1078_RS02045 at 504.525 kb on + strand, within HMPREF1078_RS02045 at 504.526 kb on - strand, within HMPREF1078_RS02045 at 504.595 kb on + strand, within HMPREF1078_RS02045 at 504.596 kb on - strand, within HMPREF1078_RS02045 at 504.607 kb on - strand, within HMPREF1078_RS02045
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1 x (C) remove 500,696 + HMPREF1078_RS02030 0.81 -1.0 500,696 + HMPREF1078_RS02030 0.81 +1.2 500,752 + HMPREF1078_RS02030 0.86 -0.9 500,793 + +1.0 500,883 - +0.4 500,894 + -1.9 500,894 + +0.6 500,895 - +2.4 500,899 - -1.4 500,914 - -0.3 500,923 + +0.5 500,923 + -0.5 500,923 + -1.2 500,927 + -0.1 500,927 + -0.0 500,927 + +0.3 500,928 - -0.7 500,928 - -0.3 500,928 - -1.4 500,976 + -0.1 500,977 - -0.7 500,994 - +0.7 501,054 + +0.1 501,092 + HMPREF1078_RS02035 0.16 -0.3 501,099 + HMPREF1078_RS02035 0.17 -1.3 501,100 - HMPREF1078_RS02035 0.17 +0.4 501,130 - HMPREF1078_RS02035 0.22 -2.6 501,196 + HMPREF1078_RS02035 0.32 -0.7 501,213 + HMPREF1078_RS02035 0.35 -0.1 501,214 - HMPREF1078_RS02035 0.35 -0.8 501,214 - HMPREF1078_RS02035 0.35 -0.5 501,226 - HMPREF1078_RS02035 0.37 -0.1 501,265 - HMPREF1078_RS02035 0.43 -0.0 501,275 - HMPREF1078_RS02035 0.45 -0.9 501,321 - HMPREF1078_RS02035 0.52 -1.0 501,364 - HMPREF1078_RS02035 0.59 +1.3 501,375 + HMPREF1078_RS02035 0.61 -1.4 501,375 + HMPREF1078_RS02035 0.61 +1.1 501,376 - HMPREF1078_RS02035 0.61 +0.7 501,385 - HMPREF1078_RS02035 0.62 +0.8 501,385 - HMPREF1078_RS02035 0.62 +1.0 501,390 - HMPREF1078_RS02035 0.63 -2.1 501,413 - HMPREF1078_RS02035 0.67 -0.2 501,419 - HMPREF1078_RS02035 0.67 +0.1 501,471 - HMPREF1078_RS02035 0.76 -0.3 501,498 + HMPREF1078_RS02035 0.80 +0.8 501,499 - HMPREF1078_RS02035 0.80 +1.0 501,499 - HMPREF1078_RS02035 0.80 -0.4 501,517 - HMPREF1078_RS02035 0.83 +0.1 501,517 - HMPREF1078_RS02035 0.83 -1.0 501,538 - HMPREF1078_RS02035 0.86 +0.3 501,692 - -0.2 501,742 + +0.0 501,771 + -0.5 501,771 + -0.1 501,772 - -0.3 501,801 + -0.9 501,914 + HMPREF1078_RS02040 0.11 -0.2 501,915 - HMPREF1078_RS02040 0.11 +0.5 501,915 - HMPREF1078_RS02040 0.11 -0.2 501,938 + HMPREF1078_RS02040 0.12 +0.5 501,959 + HMPREF1078_RS02040 0.13 +1.7 501,960 - HMPREF1078_RS02040 0.13 +0.0 501,979 - HMPREF1078_RS02040 0.14 -1.5 502,007 - HMPREF1078_RS02040 0.15 +0.2 502,007 - HMPREF1078_RS02040 0.15 -0.3 502,010 + HMPREF1078_RS02040 0.15 -1.4 502,011 - HMPREF1078_RS02040 0.15 -1.4 502,011 - HMPREF1078_RS02040 0.15 +1.1 502,075 + HMPREF1078_RS02040 0.18 +0.1 502,075 + HMPREF1078_RS02040 0.18 +0.3 502,076 - HMPREF1078_RS02040 0.18 +1.4 502,097 - HMPREF1078_RS02040 0.18 +0.3 502,265 - HMPREF1078_RS02040 0.25 +0.4 502,288 + HMPREF1078_RS02040 0.26 -1.1 502,288 + HMPREF1078_RS02040 0.26 +1.5 502,289 - HMPREF1078_RS02040 0.26 -1.0 502,289 - HMPREF1078_RS02040 0.26 -0.1 502,289 - HMPREF1078_RS02040 0.26 +0.2 502,289 - HMPREF1078_RS02040 0.26 +0.4 502,349 - HMPREF1078_RS02040 0.29 +1.2 502,517 + HMPREF1078_RS02040 0.35 +0.2 502,531 + HMPREF1078_RS02040 0.36 -0.3 502,531 + HMPREF1078_RS02040 0.36 -0.5 502,531 + HMPREF1078_RS02040 0.36 -0.0 502,532 - HMPREF1078_RS02040 0.36 +0.7 502,532 - HMPREF1078_RS02040 0.36 +0.2 502,673 - HMPREF1078_RS02040 0.42 +0.8 502,706 + HMPREF1078_RS02040 0.43 +0.3 502,707 - HMPREF1078_RS02040 0.43 +0.1 502,707 - HMPREF1078_RS02040 0.43 -1.8 502,709 - HMPREF1078_RS02040 0.43 -1.7 502,802 - HMPREF1078_RS02040 0.47 -0.1 502,822 + HMPREF1078_RS02040 0.48 +0.1 502,833 + HMPREF1078_RS02040 0.48 -0.6 502,891 - HMPREF1078_RS02040 0.50 +0.1 502,936 + HMPREF1078_RS02040 0.52 -0.6 502,936 + HMPREF1078_RS02040 0.52 -0.8 502,988 + HMPREF1078_RS02040 0.54 -0.0 502,989 - HMPREF1078_RS02040 0.54 -0.3 502,990 + HMPREF1078_RS02040 0.54 +0.5 503,023 + HMPREF1078_RS02040 0.56 +1.4 503,024 - HMPREF1078_RS02040 0.56 +0.8 503,024 - HMPREF1078_RS02040 0.56 +0.8 503,082 - HMPREF1078_RS02040 0.58 -0.3 503,093 + HMPREF1078_RS02040 0.58 -0.8 503,093 + HMPREF1078_RS02040 0.58 -0.2 503,094 - HMPREF1078_RS02040 0.58 +1.3 503,094 - HMPREF1078_RS02040 0.58 +0.8 503,118 + HMPREF1078_RS02040 0.59 -0.4 503,152 - HMPREF1078_RS02040 0.61 +0.1 503,220 - HMPREF1078_RS02040 0.64 +0.5 503,220 - HMPREF1078_RS02040 0.64 -0.5 503,240 + HMPREF1078_RS02040 0.64 -0.5 503,240 + HMPREF1078_RS02040 0.64 +0.1 503,240 + HMPREF1078_RS02040 0.64 +1.1 503,240 + HMPREF1078_RS02040 0.64 -1.2 503,241 - HMPREF1078_RS02040 0.64 +0.7 503,241 - HMPREF1078_RS02040 0.64 +1.0 503,243 - HMPREF1078_RS02040 0.64 +0.5 503,374 + HMPREF1078_RS02040 0.70 +0.6 503,374 + HMPREF1078_RS02040 0.70 -0.2 503,375 - HMPREF1078_RS02040 0.70 +0.3 503,414 + HMPREF1078_RS02040 0.71 -0.2 503,415 - HMPREF1078_RS02040 0.71 +0.2 503,415 - HMPREF1078_RS02040 0.71 -2.9 503,415 - HMPREF1078_RS02040 0.71 -0.4 503,517 + HMPREF1078_RS02040 0.75 -0.6 503,517 + HMPREF1078_RS02040 0.75 +0.3 503,518 - HMPREF1078_RS02040 0.75 +1.6 503,518 - HMPREF1078_RS02040 0.75 +0.3 503,518 - HMPREF1078_RS02040 0.75 +0.4 503,521 + HMPREF1078_RS02040 0.76 -0.5 503,522 - HMPREF1078_RS02040 0.76 -0.6 503,613 + HMPREF1078_RS02040 0.79 +0.1 503,698 - HMPREF1078_RS02040 0.83 -1.2 503,707 + HMPREF1078_RS02040 0.83 -0.4 503,753 + HMPREF1078_RS02040 0.85 -2.0 503,777 + HMPREF1078_RS02040 0.86 -0.2 503,826 + HMPREF1078_RS02040 0.88 +0.1 503,839 + HMPREF1078_RS02040 0.88 +0.5 503,839 + HMPREF1078_RS02040 0.88 +0.2 503,854 + HMPREF1078_RS02040 0.89 -0.7 503,855 - HMPREF1078_RS02040 0.89 -0.5 504,023 + +0.1 504,044 - +0.3 504,044 - +0.9 504,044 - +0.2 504,107 + -0.1 504,130 + -0.4 504,130 + +0.2 504,130 + +1.3 504,131 - +0.5 504,131 - -0.5 504,131 - +0.6 504,131 - +0.1 504,131 - +0.4 504,137 + +0.5 504,137 + -0.8 504,137 + +0.3 504,139 + -0.4 504,175 - +0.6 504,176 + +0.4 504,177 - -0.7 504,177 - +0.7 504,420 + HMPREF1078_RS02045 0.48 -1.8 504,421 - HMPREF1078_RS02045 0.48 -0.3 504,422 + HMPREF1078_RS02045 0.48 -0.5 504,422 + HMPREF1078_RS02045 0.48 -1.2 504,422 + HMPREF1078_RS02045 0.48 -1.5 504,423 - HMPREF1078_RS02045 0.48 -1.0 504,442 + HMPREF1078_RS02045 0.51 -0.4 504,452 - HMPREF1078_RS02045 0.53 +1.1 504,488 + HMPREF1078_RS02045 0.59 -1.0 504,525 + HMPREF1078_RS02045 0.65 -2.1 504,526 - HMPREF1078_RS02045 0.66 -1.1 504,595 + HMPREF1078_RS02045 0.77 -1.5 504,596 - HMPREF1078_RS02045 0.78 -0.8 504,607 - HMPREF1078_RS02045 0.79 -0.4
Or see this region's nucleotide sequence