Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS14930

Experiment: Pectin from citrus peel; autoclaved 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS14925 and HMPREF1078_RS14930 are separated by 87 nucleotidesHMPREF1078_RS14930 and HMPREF1078_RS14935 are separated by 46 nucleotides HMPREF1078_RS14925: HMPREF1078_RS14925 - acetylxylan esterase, at 34,939 to 36,219 _RS14925 HMPREF1078_RS14930: HMPREF1078_RS14930 - lactonase family protein, at 36,307 to 37,368 _RS14930 HMPREF1078_RS14935: HMPREF1078_RS14935 - N-acetylmuramic acid 6-phosphate etherase, at 37,415 to 38,230 _RS14935 Position (kb) 36 37 38Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 35.455 kb on + strand, within HMPREF1078_RS14925at 35.493 kb on + strand, within HMPREF1078_RS14925at 35.495 kb on + strand, within HMPREF1078_RS14925at 35.496 kb on - strand, within HMPREF1078_RS14925at 35.496 kb on - strand, within HMPREF1078_RS14925at 35.497 kb on + strand, within HMPREF1078_RS14925at 35.497 kb on + strand, within HMPREF1078_RS14925at 35.498 kb on - strand, within HMPREF1078_RS14925at 35.498 kb on - strand, within HMPREF1078_RS14925at 35.498 kb on - strand, within HMPREF1078_RS14925at 35.568 kb on - strand, within HMPREF1078_RS14925at 35.568 kb on - strand, within HMPREF1078_RS14925at 35.578 kb on - strand, within HMPREF1078_RS14925at 35.602 kb on - strand, within HMPREF1078_RS14925at 35.608 kb on - strand, within HMPREF1078_RS14925at 35.694 kb on + strand, within HMPREF1078_RS14925at 35.694 kb on + strand, within HMPREF1078_RS14925at 35.694 kb on + strand, within HMPREF1078_RS14925at 35.695 kb on - strand, within HMPREF1078_RS14925at 35.695 kb on - strand, within HMPREF1078_RS14925at 35.844 kb on + strand, within HMPREF1078_RS14925at 35.872 kb on - strand, within HMPREF1078_RS14925at 35.928 kb on + strand, within HMPREF1078_RS14925at 35.953 kb on + strand, within HMPREF1078_RS14925at 36.051 kb on + strand, within HMPREF1078_RS14925at 36.051 kb on + strand, within HMPREF1078_RS14925at 36.052 kb on - strand, within HMPREF1078_RS14925at 36.062 kb on - strand, within HMPREF1078_RS14925at 36.063 kb on + strand, within HMPREF1078_RS14925at 36.063 kb on + strand, within HMPREF1078_RS14925at 36.064 kb on - strand, within HMPREF1078_RS14925at 36.064 kb on - strand, within HMPREF1078_RS14925at 36.064 kb on - strand, within HMPREF1078_RS14925at 36.064 kb on - strand, within HMPREF1078_RS14925at 36.064 kb on - strand, within HMPREF1078_RS14925at 36.064 kb on - strand, within HMPREF1078_RS14925at 36.204 kb on + strandat 36.221 kb on + strandat 36.222 kb on - strandat 36.234 kb on + strandat 36.237 kb on + strandat 36.240 kb on + strandat 36.240 kb on + strandat 36.241 kb on - strandat 36.245 kb on + strandat 36.249 kb on + strandat 36.249 kb on + strandat 36.250 kb on - strandat 36.250 kb on - strandat 36.250 kb on - strandat 36.284 kb on + strandat 36.306 kb on + strandat 36.371 kb on + strandat 36.372 kb on - strandat 36.372 kb on - strandat 36.519 kb on - strand, within HMPREF1078_RS14930at 36.527 kb on - strand, within HMPREF1078_RS14930at 36.527 kb on - strand, within HMPREF1078_RS14930at 36.576 kb on + strand, within HMPREF1078_RS14930at 36.598 kb on + strand, within HMPREF1078_RS14930at 36.599 kb on - strand, within HMPREF1078_RS14930at 36.599 kb on - strand, within HMPREF1078_RS14930at 36.601 kb on - strand, within HMPREF1078_RS14930at 36.601 kb on - strand, within HMPREF1078_RS14930at 36.659 kb on + strand, within HMPREF1078_RS14930at 36.660 kb on - strand, within HMPREF1078_RS14930at 36.707 kb on + strand, within HMPREF1078_RS14930at 36.708 kb on - strand, within HMPREF1078_RS14930at 36.709 kb on + strand, within HMPREF1078_RS14930at 36.709 kb on + strand, within HMPREF1078_RS14930at 36.709 kb on + strand, within HMPREF1078_RS14930at 36.709 kb on + strand, within HMPREF1078_RS14930at 36.709 kb on + strand, within HMPREF1078_RS14930at 36.710 kb on - strand, within HMPREF1078_RS14930at 36.710 kb on - strand, within HMPREF1078_RS14930at 36.715 kb on + strand, within HMPREF1078_RS14930at 36.716 kb on - strand, within HMPREF1078_RS14930at 36.772 kb on + strand, within HMPREF1078_RS14930at 36.773 kb on - strand, within HMPREF1078_RS14930at 36.773 kb on - strand, within HMPREF1078_RS14930at 36.994 kb on + strand, within HMPREF1078_RS14930at 36.995 kb on - strand, within HMPREF1078_RS14930at 37.046 kb on + strand, within HMPREF1078_RS14930at 37.070 kb on + strand, within HMPREF1078_RS14930at 37.070 kb on + strand, within HMPREF1078_RS14930at 37.070 kb on + strand, within HMPREF1078_RS14930at 37.071 kb on - strand, within HMPREF1078_RS14930at 37.098 kb on - strand, within HMPREF1078_RS14930at 37.100 kb on - strand, within HMPREF1078_RS14930at 37.100 kb on - strand, within HMPREF1078_RS14930at 37.258 kb on - strand, within HMPREF1078_RS14930at 37.284 kb on - strandat 37.366 kb on + strandat 37.367 kb on - strandat 37.367 kb on - strandat 37.399 kb on + strandat 37.410 kb on - strandat 37.414 kb on + strandat 37.426 kb on + strandat 37.495 kb on + strandat 37.496 kb on - strandat 37.553 kb on + strand, within HMPREF1078_RS14935at 37.704 kb on + strand, within HMPREF1078_RS14935at 37.704 kb on + strand, within HMPREF1078_RS14935at 37.705 kb on - strand, within HMPREF1078_RS14935at 37.718 kb on - strand, within HMPREF1078_RS14935at 37.798 kb on + strand, within HMPREF1078_RS14935at 37.807 kb on + strand, within HMPREF1078_RS14935at 37.844 kb on + strand, within HMPREF1078_RS14935at 38.086 kb on + strand, within HMPREF1078_RS14935at 38.110 kb on + strand, within HMPREF1078_RS14935at 38.112 kb on + strand, within HMPREF1078_RS14935at 38.112 kb on + strand, within HMPREF1078_RS14935at 38.158 kb on + strandat 38.186 kb on + strandat 38.187 kb on - strandat 38.277 kb on + strandat 38.277 kb on + strandat 38.278 kb on - strandat 38.278 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
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35,455 + HMPREF1078_RS14925 0.40 +1.6
35,493 + HMPREF1078_RS14925 0.43 +1.0
35,495 + HMPREF1078_RS14925 0.43 +1.1
35,496 - HMPREF1078_RS14925 0.43 -1.4
35,496 - HMPREF1078_RS14925 0.43 -0.5
35,497 + HMPREF1078_RS14925 0.44 -0.7
35,497 + HMPREF1078_RS14925 0.44 -1.0
35,498 - HMPREF1078_RS14925 0.44 -0.5
35,498 - HMPREF1078_RS14925 0.44 -2.0
35,498 - HMPREF1078_RS14925 0.44 -2.3
35,568 - HMPREF1078_RS14925 0.49 +0.5
35,568 - HMPREF1078_RS14925 0.49 +0.4
35,578 - HMPREF1078_RS14925 0.50 +0.8
35,602 - HMPREF1078_RS14925 0.52 +0.2
35,608 - HMPREF1078_RS14925 0.52 -1.8
35,694 + HMPREF1078_RS14925 0.59 +0.1
35,694 + HMPREF1078_RS14925 0.59 -1.6
35,694 + HMPREF1078_RS14925 0.59 -1.5
35,695 - HMPREF1078_RS14925 0.59 +0.9
35,695 - HMPREF1078_RS14925 0.59 -0.5
35,844 + HMPREF1078_RS14925 0.71 -1.1
35,872 - HMPREF1078_RS14925 0.73 -0.4
35,928 + HMPREF1078_RS14925 0.77 -2.5
35,953 + HMPREF1078_RS14925 0.79 -0.0
36,051 + HMPREF1078_RS14925 0.87 -3.0
36,051 + HMPREF1078_RS14925 0.87 +1.5
36,052 - HMPREF1078_RS14925 0.87 -0.8
36,062 - HMPREF1078_RS14925 0.88 +2.4
36,063 + HMPREF1078_RS14925 0.88 -0.3
36,063 + HMPREF1078_RS14925 0.88 -0.3
36,064 - HMPREF1078_RS14925 0.88 -2.0
36,064 - HMPREF1078_RS14925 0.88 +1.0
36,064 - HMPREF1078_RS14925 0.88 -3.0
36,064 - HMPREF1078_RS14925 0.88 -5.2
36,064 - HMPREF1078_RS14925 0.88 +0.0
36,064 - HMPREF1078_RS14925 0.88 +3.3
36,204 + -0.6
36,221 + -1.7
36,222 - -0.4
36,234 + -1.8
36,237 + +0.7
36,240 + +0.5
36,240 + -1.3
36,241 - -0.6
36,245 + -2.4
36,249 + +1.3
36,249 + +0.5
36,250 - -2.1
36,250 - -1.1
36,250 - +0.2
36,284 + -0.5
36,306 + +1.4
36,371 + -0.2
36,372 - +0.2
36,372 - -2.7
36,519 - HMPREF1078_RS14930 0.20 -1.5
36,527 - HMPREF1078_RS14930 0.21 +0.8
36,527 - HMPREF1078_RS14930 0.21 -1.3
36,576 + HMPREF1078_RS14930 0.25 +0.5
36,598 + HMPREF1078_RS14930 0.27 +0.6
36,599 - HMPREF1078_RS14930 0.27 +1.5
36,599 - HMPREF1078_RS14930 0.27 +1.0
36,601 - HMPREF1078_RS14930 0.28 -1.9
36,601 - HMPREF1078_RS14930 0.28 -1.5
36,659 + HMPREF1078_RS14930 0.33 +1.8
36,660 - HMPREF1078_RS14930 0.33 -1.1
36,707 + HMPREF1078_RS14930 0.38 +0.2
36,708 - HMPREF1078_RS14930 0.38 +0.1
36,709 + HMPREF1078_RS14930 0.38 +0.1
36,709 + HMPREF1078_RS14930 0.38 -0.0
36,709 + HMPREF1078_RS14930 0.38 -1.4
36,709 + HMPREF1078_RS14930 0.38 +0.9
36,709 + HMPREF1078_RS14930 0.38 -1.4
36,710 - HMPREF1078_RS14930 0.38 -1.1
36,710 - HMPREF1078_RS14930 0.38 +0.9
36,715 + HMPREF1078_RS14930 0.38 +3.7
36,716 - HMPREF1078_RS14930 0.39 +0.0
36,772 + HMPREF1078_RS14930 0.44 -0.6
36,773 - HMPREF1078_RS14930 0.44 -0.5
36,773 - HMPREF1078_RS14930 0.44 -0.9
36,994 + HMPREF1078_RS14930 0.65 -0.4
36,995 - HMPREF1078_RS14930 0.65 -1.7
37,046 + HMPREF1078_RS14930 0.70 +0.6
37,070 + HMPREF1078_RS14930 0.72 -0.6
37,070 + HMPREF1078_RS14930 0.72 -0.7
37,070 + HMPREF1078_RS14930 0.72 +0.2
37,071 - HMPREF1078_RS14930 0.72 +0.5
37,098 - HMPREF1078_RS14930 0.74 +0.6
37,100 - HMPREF1078_RS14930 0.75 -1.3
37,100 - HMPREF1078_RS14930 0.75 +0.4
37,258 - HMPREF1078_RS14930 0.90 +0.2
37,284 - -0.9
37,366 + -0.4
37,367 - -0.1
37,367 - -0.2
37,399 + +2.7
37,410 - +0.2
37,414 + +1.5
37,426 + -1.1
37,495 + -2.7
37,496 - -0.7
37,553 + HMPREF1078_RS14935 0.17 +1.5
37,704 + HMPREF1078_RS14935 0.35 +0.4
37,704 + HMPREF1078_RS14935 0.35 +1.3
37,705 - HMPREF1078_RS14935 0.36 +0.3
37,718 - HMPREF1078_RS14935 0.37 -0.4
37,798 + HMPREF1078_RS14935 0.47 -0.5
37,807 + HMPREF1078_RS14935 0.48 +0.2
37,844 + HMPREF1078_RS14935 0.53 +1.0
38,086 + HMPREF1078_RS14935 0.82 +0.2
38,110 + HMPREF1078_RS14935 0.85 -0.1
38,112 + HMPREF1078_RS14935 0.85 -0.3
38,112 + HMPREF1078_RS14935 0.85 -1.0
38,158 + +1.5
38,186 + -0.9
38,187 - +1.1
38,277 + +0.4
38,277 + +0.3
38,278 - -2.1
38,278 - -0.9

Or see this region's nucleotide sequence