Experiment: Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS09345 and HMPREF1078_RS09350 are separated by 8 nucleotides HMPREF1078_RS09350 and HMPREF1078_RS09355 overlap by 4 nucleotides HMPREF1078_RS09355 and HMPREF1078_RS09360 are separated by 5 nucleotides HMPREF1078_RS09360 and HMPREF1078_RS09365 are separated by 7 nucleotides
HMPREF1078_RS09345: HMPREF1078_RS09345 - conjugal transfer protein TraO, at 456,068 to 456,625
_RS09345
HMPREF1078_RS09350: HMPREF1078_RS09350 - DUF4116 domain-containing protein, at 456,634 to 457,527
_RS09350
HMPREF1078_RS09355: HMPREF1078_RS09355 - toprim domain-containing protein, at 457,524 to 458,447
_RS09355
HMPREF1078_RS09360: HMPREF1078_RS09360 - DUF3872 domain-containing protein, at 458,453 to 458,971
_RS09360
HMPREF1078_RS09365: HMPREF1078_RS09365 - hypothetical protein, at 458,979 to 459,497
_RS09365
Position (kb) 457
458
459 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 456.559 kb on - strand, within HMPREF1078_RS09345 at 456.601 kb on - strand at 456.604 kb on + strand at 456.605 kb on - strand at 456.607 kb on - strand at 456.607 kb on - strand at 456.669 kb on - strand at 456.669 kb on - strand at 456.714 kb on - strand at 457.033 kb on + strand, within HMPREF1078_RS09350 at 457.033 kb on + strand, within HMPREF1078_RS09350 at 457.034 kb on - strand, within HMPREF1078_RS09350 at 457.147 kb on + strand, within HMPREF1078_RS09350 at 457.148 kb on - strand, within HMPREF1078_RS09350 at 457.148 kb on - strand, within HMPREF1078_RS09350 at 457.159 kb on - strand, within HMPREF1078_RS09350 at 457.210 kb on - strand, within HMPREF1078_RS09350 at 457.210 kb on - strand, within HMPREF1078_RS09350 at 457.221 kb on - strand, within HMPREF1078_RS09350 at 457.308 kb on - strand, within HMPREF1078_RS09350 at 457.308 kb on - strand, within HMPREF1078_RS09350 at 457.308 kb on - strand, within HMPREF1078_RS09350 at 457.308 kb on - strand, within HMPREF1078_RS09350 at 457.308 kb on - strand, within HMPREF1078_RS09350 at 457.308 kb on - strand, within HMPREF1078_RS09350 at 457.310 kb on - strand, within HMPREF1078_RS09350 at 457.310 kb on - strand, within HMPREF1078_RS09350 at 457.310 kb on - strand, within HMPREF1078_RS09350 at 457.312 kb on - strand, within HMPREF1078_RS09350 at 457.312 kb on - strand, within HMPREF1078_RS09350 at 457.312 kb on - strand, within HMPREF1078_RS09350 at 457.378 kb on + strand, within HMPREF1078_RS09350 at 457.438 kb on - strand at 457.477 kb on + strand at 457.630 kb on - strand, within HMPREF1078_RS09355 at 457.642 kb on - strand, within HMPREF1078_RS09355 at 457.695 kb on + strand, within HMPREF1078_RS09355 at 457.696 kb on - strand, within HMPREF1078_RS09355 at 457.702 kb on - strand, within HMPREF1078_RS09355 at 457.782 kb on + strand, within HMPREF1078_RS09355 at 457.782 kb on + strand, within HMPREF1078_RS09355 at 457.783 kb on - strand, within HMPREF1078_RS09355 at 457.783 kb on - strand, within HMPREF1078_RS09355 at 457.828 kb on - strand, within HMPREF1078_RS09355 at 457.828 kb on - strand, within HMPREF1078_RS09355 at 457.915 kb on - strand, within HMPREF1078_RS09355 at 457.915 kb on - strand, within HMPREF1078_RS09355 at 457.934 kb on - strand, within HMPREF1078_RS09355 at 457.934 kb on - strand, within HMPREF1078_RS09355 at 457.969 kb on + strand, within HMPREF1078_RS09355 at 457.970 kb on - strand, within HMPREF1078_RS09355 at 457.975 kb on - strand, within HMPREF1078_RS09355 at 457.975 kb on - strand, within HMPREF1078_RS09355 at 458.137 kb on - strand, within HMPREF1078_RS09355 at 458.137 kb on - strand, within HMPREF1078_RS09355 at 458.217 kb on + strand, within HMPREF1078_RS09355 at 458.217 kb on + strand, within HMPREF1078_RS09355 at 458.217 kb on + strand, within HMPREF1078_RS09355 at 458.341 kb on - strand, within HMPREF1078_RS09355 at 458.367 kb on + strand at 458.368 kb on - strand at 458.452 kb on + strand at 458.452 kb on + strand at 458.493 kb on + strand at 458.493 kb on + strand at 458.497 kb on + strand at 458.497 kb on + strand at 458.613 kb on + strand, within HMPREF1078_RS09360 at 458.613 kb on + strand, within HMPREF1078_RS09360 at 458.618 kb on - strand, within HMPREF1078_RS09360 at 458.694 kb on - strand, within HMPREF1078_RS09360 at 458.695 kb on + strand, within HMPREF1078_RS09360 at 458.695 kb on + strand, within HMPREF1078_RS09360 at 458.714 kb on + strand, within HMPREF1078_RS09360 at 458.728 kb on + strand, within HMPREF1078_RS09360 at 458.774 kb on + strand, within HMPREF1078_RS09360 at 458.804 kb on + strand, within HMPREF1078_RS09360 at 458.805 kb on - strand, within HMPREF1078_RS09360 at 458.808 kb on - strand, within HMPREF1078_RS09360 at 458.857 kb on + strand, within HMPREF1078_RS09360 at 458.945 kb on - strand at 458.963 kb on + strand at 459.113 kb on + strand, within HMPREF1078_RS09365 at 459.153 kb on + strand, within HMPREF1078_RS09365 at 459.153 kb on + strand, within HMPREF1078_RS09365 at 459.173 kb on + strand, within HMPREF1078_RS09365 at 459.174 kb on - strand, within HMPREF1078_RS09365 at 459.198 kb on + strand, within HMPREF1078_RS09365 at 459.199 kb on - strand, within HMPREF1078_RS09365 at 459.199 kb on - strand, within HMPREF1078_RS09365 at 459.203 kb on + strand, within HMPREF1078_RS09365 at 459.203 kb on + strand, within HMPREF1078_RS09365 at 459.203 kb on + strand, within HMPREF1078_RS09365 at 459.204 kb on - strand, within HMPREF1078_RS09365 at 459.204 kb on - strand, within HMPREF1078_RS09365 at 459.204 kb on - strand, within HMPREF1078_RS09365 at 459.204 kb on - strand, within HMPREF1078_RS09365 at 459.235 kb on + strand, within HMPREF1078_RS09365 at 459.273 kb on + strand, within HMPREF1078_RS09365 at 459.274 kb on - strand, within HMPREF1078_RS09365 at 459.302 kb on - strand, within HMPREF1078_RS09365 at 459.302 kb on - strand, within HMPREF1078_RS09365 at 459.302 kb on - strand, within HMPREF1078_RS09365 at 459.302 kb on - strand, within HMPREF1078_RS09365 at 459.399 kb on + strand, within HMPREF1078_RS09365 at 459.399 kb on + strand, within HMPREF1078_RS09365 at 459.400 kb on - strand, within HMPREF1078_RS09365 at 459.400 kb on - strand, within HMPREF1078_RS09365 at 459.400 kb on - strand, within HMPREF1078_RS09365 at 459.400 kb on - strand, within HMPREF1078_RS09365 at 459.400 kb on - strand, within HMPREF1078_RS09365 at 459.402 kb on - strand, within HMPREF1078_RS09365 at 459.402 kb on - strand, within HMPREF1078_RS09365 at 459.408 kb on + strand, within HMPREF1078_RS09365 at 459.408 kb on + strand, within HMPREF1078_RS09365 at 459.408 kb on + strand, within HMPREF1078_RS09365 at 459.408 kb on + strand, within HMPREF1078_RS09365 at 459.408 kb on + strand, within HMPREF1078_RS09365 at 459.409 kb on - strand, within HMPREF1078_RS09365 at 459.409 kb on - strand, within HMPREF1078_RS09365 at 459.409 kb on - strand, within HMPREF1078_RS09365 at 459.409 kb on - strand, within HMPREF1078_RS09365 at 459.409 kb on - strand, within HMPREF1078_RS09365 at 459.409 kb on - strand, within HMPREF1078_RS09365 at 459.409 kb on - strand, within HMPREF1078_RS09365 at 459.409 kb on - strand, within HMPREF1078_RS09365 at 459.409 kb on - strand, within HMPREF1078_RS09365 at 459.410 kb on + strand, within HMPREF1078_RS09365 at 459.410 kb on + strand, within HMPREF1078_RS09365 at 459.410 kb on + strand, within HMPREF1078_RS09365 at 459.410 kb on + strand, within HMPREF1078_RS09365 at 459.410 kb on + strand, within HMPREF1078_RS09365 at 459.410 kb on + strand, within HMPREF1078_RS09365 at 459.410 kb on + strand, within HMPREF1078_RS09365 at 459.410 kb on + strand, within HMPREF1078_RS09365 at 459.410 kb on + strand, within HMPREF1078_RS09365 at 459.411 kb on - strand, within HMPREF1078_RS09365 at 459.411 kb on - strand, within HMPREF1078_RS09365 at 459.411 kb on - strand, within HMPREF1078_RS09365 at 459.411 kb on - strand, within HMPREF1078_RS09365 at 459.411 kb on - strand, within HMPREF1078_RS09365 at 459.411 kb on - strand, within HMPREF1078_RS09365 at 459.411 kb on - strand, within HMPREF1078_RS09365 at 459.411 kb on - strand, within HMPREF1078_RS09365 at 459.411 kb on - strand, within HMPREF1078_RS09365 at 459.412 kb on + strand, within HMPREF1078_RS09365 at 459.412 kb on + strand, within HMPREF1078_RS09365 at 459.412 kb on + strand, within HMPREF1078_RS09365 at 459.413 kb on - strand, within HMPREF1078_RS09365 at 459.413 kb on - strand, within HMPREF1078_RS09365 at 459.413 kb on - strand, within HMPREF1078_RS09365 at 459.413 kb on - strand, within HMPREF1078_RS09365 at 459.413 kb on - strand, within HMPREF1078_RS09365 at 459.413 kb on - strand, within HMPREF1078_RS09365 at 459.413 kb on - strand, within HMPREF1078_RS09365 at 459.418 kb on - strand, within HMPREF1078_RS09365 at 459.426 kb on + strand, within HMPREF1078_RS09365 at 459.427 kb on - strand, within HMPREF1078_RS09365 at 459.427 kb on - strand, within HMPREF1078_RS09365
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/mL (C) remove 456,559 - HMPREF1078_RS09345 0.88 +0.3 456,601 - -0.6 456,604 + -0.7 456,605 - -1.4 456,607 - -0.8 456,607 - -0.8 456,669 - -0.0 456,669 - -0.0 456,714 - -0.4 457,033 + HMPREF1078_RS09350 0.45 -0.3 457,033 + HMPREF1078_RS09350 0.45 -1.8 457,034 - HMPREF1078_RS09350 0.45 +0.1 457,147 + HMPREF1078_RS09350 0.57 -1.6 457,148 - HMPREF1078_RS09350 0.57 -0.5 457,148 - HMPREF1078_RS09350 0.57 -2.0 457,159 - HMPREF1078_RS09350 0.59 +0.7 457,210 - HMPREF1078_RS09350 0.64 +0.3 457,210 - HMPREF1078_RS09350 0.64 -2.1 457,221 - HMPREF1078_RS09350 0.66 -0.5 457,308 - HMPREF1078_RS09350 0.75 -0.1 457,308 - HMPREF1078_RS09350 0.75 -4.0 457,308 - HMPREF1078_RS09350 0.75 -1.1 457,308 - HMPREF1078_RS09350 0.75 +0.2 457,308 - HMPREF1078_RS09350 0.75 +1.5 457,308 - HMPREF1078_RS09350 0.75 +0.8 457,310 - HMPREF1078_RS09350 0.76 +0.6 457,310 - HMPREF1078_RS09350 0.76 -0.9 457,310 - HMPREF1078_RS09350 0.76 +0.4 457,312 - HMPREF1078_RS09350 0.76 -1.0 457,312 - HMPREF1078_RS09350 0.76 +0.4 457,312 - HMPREF1078_RS09350 0.76 -0.3 457,378 + HMPREF1078_RS09350 0.83 -3.0 457,438 - +1.1 457,477 + -1.0 457,630 - HMPREF1078_RS09355 0.11 -1.9 457,642 - HMPREF1078_RS09355 0.13 -0.4 457,695 + HMPREF1078_RS09355 0.19 +3.0 457,696 - HMPREF1078_RS09355 0.19 -0.3 457,702 - HMPREF1078_RS09355 0.19 -0.1 457,782 + HMPREF1078_RS09355 0.28 -1.5 457,782 + HMPREF1078_RS09355 0.28 -2.0 457,783 - HMPREF1078_RS09355 0.28 -1.1 457,783 - HMPREF1078_RS09355 0.28 -1.3 457,828 - HMPREF1078_RS09355 0.33 +1.3 457,828 - HMPREF1078_RS09355 0.33 -0.7 457,915 - HMPREF1078_RS09355 0.42 -1.8 457,915 - HMPREF1078_RS09355 0.42 -1.1 457,934 - HMPREF1078_RS09355 0.44 -0.6 457,934 - HMPREF1078_RS09355 0.44 -0.0 457,969 + HMPREF1078_RS09355 0.48 +0.0 457,970 - HMPREF1078_RS09355 0.48 +0.0 457,975 - HMPREF1078_RS09355 0.49 +0.6 457,975 - HMPREF1078_RS09355 0.49 +0.2 458,137 - HMPREF1078_RS09355 0.66 -1.2 458,137 - HMPREF1078_RS09355 0.66 -3.1 458,217 + HMPREF1078_RS09355 0.75 -2.7 458,217 + HMPREF1078_RS09355 0.75 -1.3 458,217 + HMPREF1078_RS09355 0.75 -0.3 458,341 - HMPREF1078_RS09355 0.88 -0.4 458,367 + -0.5 458,368 - +0.2 458,452 + +3.7 458,452 + -0.2 458,493 + +0.3 458,493 + +0.7 458,497 + -0.5 458,497 + +1.5 458,613 + HMPREF1078_RS09360 0.31 +1.5 458,613 + HMPREF1078_RS09360 0.31 -0.2 458,618 - HMPREF1078_RS09360 0.32 -1.5 458,694 - HMPREF1078_RS09360 0.46 -0.1 458,695 + HMPREF1078_RS09360 0.47 -1.1 458,695 + HMPREF1078_RS09360 0.47 +0.5 458,714 + HMPREF1078_RS09360 0.50 -0.1 458,728 + HMPREF1078_RS09360 0.53 +1.2 458,774 + HMPREF1078_RS09360 0.62 -2.8 458,804 + HMPREF1078_RS09360 0.68 +0.8 458,805 - HMPREF1078_RS09360 0.68 -0.1 458,808 - HMPREF1078_RS09360 0.68 -1.8 458,857 + HMPREF1078_RS09360 0.78 -0.1 458,945 - +1.2 458,963 + -0.0 459,113 + HMPREF1078_RS09365 0.26 +0.8 459,153 + HMPREF1078_RS09365 0.34 +0.4 459,153 + HMPREF1078_RS09365 0.34 -0.5 459,173 + HMPREF1078_RS09365 0.37 +0.2 459,174 - HMPREF1078_RS09365 0.38 +0.1 459,198 + HMPREF1078_RS09365 0.42 +0.8 459,199 - HMPREF1078_RS09365 0.42 -0.7 459,199 - HMPREF1078_RS09365 0.42 -0.0 459,203 + HMPREF1078_RS09365 0.43 +0.1 459,203 + HMPREF1078_RS09365 0.43 -0.3 459,203 + HMPREF1078_RS09365 0.43 +0.1 459,204 - HMPREF1078_RS09365 0.43 -0.1 459,204 - HMPREF1078_RS09365 0.43 -1.9 459,204 - HMPREF1078_RS09365 0.43 +0.6 459,204 - HMPREF1078_RS09365 0.43 -1.7 459,235 + HMPREF1078_RS09365 0.49 -0.3 459,273 + HMPREF1078_RS09365 0.57 +0.0 459,274 - HMPREF1078_RS09365 0.57 -0.3 459,302 - HMPREF1078_RS09365 0.62 -1.4 459,302 - HMPREF1078_RS09365 0.62 +0.5 459,302 - HMPREF1078_RS09365 0.62 -0.3 459,302 - HMPREF1078_RS09365 0.62 +0.4 459,399 + HMPREF1078_RS09365 0.81 -0.6 459,399 + HMPREF1078_RS09365 0.81 -1.4 459,400 - HMPREF1078_RS09365 0.81 +0.5 459,400 - HMPREF1078_RS09365 0.81 +1.0 459,400 - HMPREF1078_RS09365 0.81 -0.9 459,400 - HMPREF1078_RS09365 0.81 -0.5 459,400 - HMPREF1078_RS09365 0.81 +3.5 459,402 - HMPREF1078_RS09365 0.82 -1.4 459,402 - HMPREF1078_RS09365 0.82 -0.1 459,408 + HMPREF1078_RS09365 0.83 -0.0 459,408 + HMPREF1078_RS09365 0.83 -1.2 459,408 + HMPREF1078_RS09365 0.83 -0.9 459,408 + HMPREF1078_RS09365 0.83 -1.3 459,408 + HMPREF1078_RS09365 0.83 -0.3 459,409 - HMPREF1078_RS09365 0.83 +0.8 459,409 - HMPREF1078_RS09365 0.83 -0.5 459,409 - HMPREF1078_RS09365 0.83 +1.7 459,409 - HMPREF1078_RS09365 0.83 -0.1 459,409 - HMPREF1078_RS09365 0.83 -0.3 459,409 - HMPREF1078_RS09365 0.83 -0.3 459,409 - HMPREF1078_RS09365 0.83 -1.7 459,409 - HMPREF1078_RS09365 0.83 -0.4 459,409 - HMPREF1078_RS09365 0.83 +0.5 459,410 + HMPREF1078_RS09365 0.83 +0.3 459,410 + HMPREF1078_RS09365 0.83 +2.5 459,410 + HMPREF1078_RS09365 0.83 -0.1 459,410 + HMPREF1078_RS09365 0.83 -0.8 459,410 + HMPREF1078_RS09365 0.83 +0.4 459,410 + HMPREF1078_RS09365 0.83 -1.1 459,410 + HMPREF1078_RS09365 0.83 -0.3 459,410 + HMPREF1078_RS09365 0.83 -0.5 459,410 + HMPREF1078_RS09365 0.83 +0.1 459,411 - HMPREF1078_RS09365 0.83 -1.6 459,411 - HMPREF1078_RS09365 0.83 -0.9 459,411 - HMPREF1078_RS09365 0.83 +1.1 459,411 - HMPREF1078_RS09365 0.83 +0.8 459,411 - HMPREF1078_RS09365 0.83 -0.3 459,411 - HMPREF1078_RS09365 0.83 -1.2 459,411 - HMPREF1078_RS09365 0.83 -1.3 459,411 - HMPREF1078_RS09365 0.83 -1.1 459,411 - HMPREF1078_RS09365 0.83 -1.9 459,412 + HMPREF1078_RS09365 0.83 -2.5 459,412 + HMPREF1078_RS09365 0.83 +0.8 459,412 + HMPREF1078_RS09365 0.83 -1.3 459,413 - HMPREF1078_RS09365 0.84 +1.0 459,413 - HMPREF1078_RS09365 0.84 -0.5 459,413 - HMPREF1078_RS09365 0.84 -0.0 459,413 - HMPREF1078_RS09365 0.84 -0.1 459,413 - HMPREF1078_RS09365 0.84 +0.9 459,413 - HMPREF1078_RS09365 0.84 -0.8 459,413 - HMPREF1078_RS09365 0.84 +1.8 459,418 - HMPREF1078_RS09365 0.85 +1.2 459,426 + HMPREF1078_RS09365 0.86 -0.2 459,427 - HMPREF1078_RS09365 0.86 +0.2 459,427 - HMPREF1078_RS09365 0.86 -2.6
Or see this region's nucleotide sequence