Experiment: Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS09320 and HMPREF1078_RS09325 are separated by 92 nucleotides HMPREF1078_RS09325 and HMPREF1078_RS09330 are separated by 4 nucleotides HMPREF1078_RS09330 and HMPREF1078_RS09335 overlap by 29 nucleotides HMPREF1078_RS09335 and HMPREF1078_RS09340 are separated by 69 nucleotides
HMPREF1078_RS09320: HMPREF1078_RS09320 - conjugative transposon protein TraJ, at 451,676 to 452,704
_RS09320
HMPREF1078_RS09325: HMPREF1078_RS09325 - conjugative transposon protein TraK, at 452,797 to 453,420
_RS09325
HMPREF1078_RS09330: HMPREF1078_RS09330 - TraL conjugative transposon family protein, at 453,425 to 453,712
_RS09330
HMPREF1078_RS09335: HMPREF1078_RS09335 - conjugative transposon protein TraM, at 453,684 to 455,009
_RS09335
HMPREF1078_RS09340: HMPREF1078_RS09340 - conjugative transposon protein TraN, at 455,079 to 456,071
_RS09340
Position (kb) 453
454
455
456 Strain fitness (log2 ratio) -2
-1
0
1 at 452.733 kb on - strand at 452.844 kb on - strand at 452.943 kb on - strand, within HMPREF1078_RS09325 at 452.949 kb on - strand, within HMPREF1078_RS09325 at 452.949 kb on - strand, within HMPREF1078_RS09325 at 453.134 kb on - strand, within HMPREF1078_RS09325 at 453.425 kb on - strand at 453.440 kb on - strand at 453.569 kb on - strand, within HMPREF1078_RS09330 at 453.622 kb on - strand, within HMPREF1078_RS09330 at 453.672 kb on - strand, within HMPREF1078_RS09330 at 453.677 kb on - strand, within HMPREF1078_RS09330 at 453.682 kb on - strand, within HMPREF1078_RS09330 at 453.684 kb on - strand at 453.756 kb on - strand at 453.846 kb on - strand, within HMPREF1078_RS09335 at 453.846 kb on - strand, within HMPREF1078_RS09335 at 453.928 kb on - strand, within HMPREF1078_RS09335 at 454.094 kb on - strand, within HMPREF1078_RS09335 at 454.152 kb on - strand, within HMPREF1078_RS09335 at 454.550 kb on - strand, within HMPREF1078_RS09335 at 454.736 kb on - strand, within HMPREF1078_RS09335 at 454.736 kb on - strand, within HMPREF1078_RS09335 at 454.736 kb on - strand, within HMPREF1078_RS09335 at 454.933 kb on - strand at 454.935 kb on - strand at 454.935 kb on - strand at 454.935 kb on - strand at 454.937 kb on - strand at 454.937 kb on - strand at 455.008 kb on - strand at 455.078 kb on + strand at 455.344 kb on - strand, within HMPREF1078_RS09340 at 455.707 kb on - strand, within HMPREF1078_RS09340 at 455.722 kb on + strand, within HMPREF1078_RS09340 at 455.723 kb on - strand, within HMPREF1078_RS09340 at 455.723 kb on - strand, within HMPREF1078_RS09340 at 455.724 kb on + strand, within HMPREF1078_RS09340 at 455.725 kb on - strand, within HMPREF1078_RS09340 at 455.725 kb on - strand, within HMPREF1078_RS09340 at 455.725 kb on - strand, within HMPREF1078_RS09340 at 455.725 kb on - strand, within HMPREF1078_RS09340 at 455.725 kb on - strand, within HMPREF1078_RS09340 at 455.725 kb on - strand, within HMPREF1078_RS09340 at 455.884 kb on - strand, within HMPREF1078_RS09340
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/mL (C) remove 452,733 - -0.4 452,844 - -0.6 452,943 - HMPREF1078_RS09325 0.23 +0.6 452,949 - HMPREF1078_RS09325 0.24 -0.7 452,949 - HMPREF1078_RS09325 0.24 -1.2 453,134 - HMPREF1078_RS09325 0.54 +0.6 453,425 - +0.3 453,440 - -0.5 453,569 - HMPREF1078_RS09330 0.50 +0.3 453,622 - HMPREF1078_RS09330 0.68 +0.3 453,672 - HMPREF1078_RS09330 0.86 -1.1 453,677 - HMPREF1078_RS09330 0.88 +0.2 453,682 - HMPREF1078_RS09330 0.89 -0.9 453,684 - -0.7 453,756 - -0.6 453,846 - HMPREF1078_RS09335 0.12 -0.6 453,846 - HMPREF1078_RS09335 0.12 -1.1 453,928 - HMPREF1078_RS09335 0.18 -1.1 454,094 - HMPREF1078_RS09335 0.31 +1.5 454,152 - HMPREF1078_RS09335 0.35 -0.5 454,550 - HMPREF1078_RS09335 0.65 -1.9 454,736 - HMPREF1078_RS09335 0.79 -0.6 454,736 - HMPREF1078_RS09335 0.79 +1.0 454,736 - HMPREF1078_RS09335 0.79 -1.4 454,933 - -0.5 454,935 - -1.7 454,935 - +1.3 454,935 - -0.9 454,937 - +0.0 454,937 - +0.2 455,008 - +0.2 455,078 + -0.5 455,344 - HMPREF1078_RS09340 0.27 -0.6 455,707 - HMPREF1078_RS09340 0.63 -2.2 455,722 + HMPREF1078_RS09340 0.65 -1.6 455,723 - HMPREF1078_RS09340 0.65 -0.3 455,723 - HMPREF1078_RS09340 0.65 -0.1 455,724 + HMPREF1078_RS09340 0.65 -0.8 455,725 - HMPREF1078_RS09340 0.65 -0.4 455,725 - HMPREF1078_RS09340 0.65 +0.1 455,725 - HMPREF1078_RS09340 0.65 +0.7 455,725 - HMPREF1078_RS09340 0.65 +0.2 455,725 - HMPREF1078_RS09340 0.65 +1.4 455,725 - HMPREF1078_RS09340 0.65 -1.1 455,884 - HMPREF1078_RS09340 0.81 -0.1
Or see this region's nucleotide sequence