Experiment: Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08095 and HMPREF1078_RS08100 overlap by 6 nucleotides HMPREF1078_RS08100 and HMPREF1078_RS08105 are separated by 53 nucleotides
HMPREF1078_RS08095: HMPREF1078_RS08095 - queuosine precursor transporter, at 183,957 to 184,643
_RS08095
HMPREF1078_RS08100: HMPREF1078_RS08100 - HAD family phosphatase, at 184,638 to 185,270
_RS08100
HMPREF1078_RS08105: HMPREF1078_RS08105 - ABC transporter substrate-binding protein, at 185,324 to 186,652
_RS08105
Position (kb) 184
185
186 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 183.654 kb on - strand at 183.655 kb on + strand at 183.655 kb on + strand at 183.655 kb on + strand at 183.655 kb on + strand at 183.655 kb on + strand at 183.656 kb on - strand at 183.656 kb on - strand at 183.656 kb on - strand at 183.656 kb on - strand at 183.656 kb on - strand at 183.656 kb on - strand at 183.656 kb on - strand at 183.657 kb on + strand at 183.657 kb on + strand at 183.657 kb on + strand at 183.657 kb on + strand at 183.657 kb on + strand at 183.658 kb on - strand at 183.658 kb on - strand at 183.658 kb on - strand at 183.658 kb on - strand at 183.658 kb on - strand at 183.658 kb on - strand at 183.658 kb on - strand at 183.659 kb on + strand at 183.660 kb on - strand at 183.660 kb on - strand at 183.666 kb on - strand at 183.727 kb on - strand at 183.759 kb on + strand at 183.849 kb on + strand at 183.849 kb on + strand at 183.849 kb on + strand at 183.849 kb on + strand at 183.850 kb on - strand at 183.851 kb on + strand at 183.852 kb on - strand at 183.854 kb on + strand at 183.855 kb on - strand at 183.860 kb on + strand at 183.864 kb on + strand at 183.893 kb on + strand at 183.911 kb on - strand at 183.915 kb on + strand at 183.957 kb on - strand at 183.971 kb on + strand at 183.972 kb on - strand at 183.976 kb on + strand at 184.107 kb on + strand, within HMPREF1078_RS08095 at 184.108 kb on - strand, within HMPREF1078_RS08095 at 184.108 kb on - strand, within HMPREF1078_RS08095 at 184.108 kb on - strand, within HMPREF1078_RS08095 at 184.110 kb on - strand, within HMPREF1078_RS08095 at 184.110 kb on - strand, within HMPREF1078_RS08095 at 184.110 kb on - strand, within HMPREF1078_RS08095 at 184.125 kb on - strand, within HMPREF1078_RS08095 at 184.125 kb on - strand, within HMPREF1078_RS08095 at 184.297 kb on + strand, within HMPREF1078_RS08095 at 184.341 kb on + strand, within HMPREF1078_RS08095 at 184.341 kb on + strand, within HMPREF1078_RS08095 at 184.342 kb on - strand, within HMPREF1078_RS08095 at 184.352 kb on + strand, within HMPREF1078_RS08095 at 184.353 kb on - strand, within HMPREF1078_RS08095 at 184.490 kb on + strand, within HMPREF1078_RS08095 at 184.490 kb on + strand, within HMPREF1078_RS08095 at 184.524 kb on + strand, within HMPREF1078_RS08095 at 184.525 kb on - strand, within HMPREF1078_RS08095 at 184.525 kb on - strand, within HMPREF1078_RS08095 at 184.561 kb on + strand, within HMPREF1078_RS08095 at 184.567 kb on - strand, within HMPREF1078_RS08095 at 184.568 kb on + strand, within HMPREF1078_RS08095 at 184.615 kb on - strand at 184.615 kb on - strand at 184.620 kb on - strand at 184.640 kb on - strand at 184.646 kb on + strand at 184.647 kb on - strand at 184.699 kb on + strand at 184.699 kb on + strand at 184.699 kb on + strand at 184.700 kb on - strand at 184.700 kb on - strand at 184.704 kb on - strand, within HMPREF1078_RS08100 at 184.751 kb on - strand, within HMPREF1078_RS08100 at 184.753 kb on - strand, within HMPREF1078_RS08100 at 184.753 kb on - strand, within HMPREF1078_RS08100 at 184.798 kb on + strand, within HMPREF1078_RS08100 at 184.798 kb on + strand, within HMPREF1078_RS08100 at 184.799 kb on - strand, within HMPREF1078_RS08100 at 184.799 kb on - strand, within HMPREF1078_RS08100 at 184.850 kb on - strand, within HMPREF1078_RS08100 at 184.853 kb on + strand, within HMPREF1078_RS08100 at 184.853 kb on + strand, within HMPREF1078_RS08100 at 184.854 kb on - strand, within HMPREF1078_RS08100 at 184.886 kb on + strand, within HMPREF1078_RS08100 at 184.886 kb on + strand, within HMPREF1078_RS08100 at 184.886 kb on + strand, within HMPREF1078_RS08100 at 184.888 kb on + strand, within HMPREF1078_RS08100 at 184.934 kb on + strand, within HMPREF1078_RS08100 at 184.952 kb on + strand, within HMPREF1078_RS08100 at 184.953 kb on - strand, within HMPREF1078_RS08100 at 184.991 kb on + strand, within HMPREF1078_RS08100 at 184.992 kb on - strand, within HMPREF1078_RS08100 at 185.034 kb on + strand, within HMPREF1078_RS08100 at 185.034 kb on + strand, within HMPREF1078_RS08100 at 185.034 kb on + strand, within HMPREF1078_RS08100 at 185.034 kb on + strand, within HMPREF1078_RS08100 at 185.035 kb on - strand, within HMPREF1078_RS08100 at 185.135 kb on + strand, within HMPREF1078_RS08100 at 185.136 kb on - strand, within HMPREF1078_RS08100 at 185.136 kb on - strand, within HMPREF1078_RS08100 at 185.147 kb on + strand, within HMPREF1078_RS08100 at 185.148 kb on - strand, within HMPREF1078_RS08100 at 185.148 kb on - strand, within HMPREF1078_RS08100 at 185.166 kb on + strand, within HMPREF1078_RS08100 at 185.166 kb on + strand, within HMPREF1078_RS08100 at 185.169 kb on - strand, within HMPREF1078_RS08100 at 185.314 kb on + strand at 185.315 kb on - strand at 185.322 kb on + strand at 185.323 kb on - strand at 185.368 kb on - strand at 185.386 kb on - strand at 185.387 kb on + strand at 185.387 kb on + strand at 185.388 kb on - strand at 185.388 kb on - strand at 185.403 kb on - strand at 185.452 kb on + strand at 185.453 kb on - strand at 185.550 kb on + strand, within HMPREF1078_RS08105 at 185.550 kb on + strand, within HMPREF1078_RS08105 at 185.692 kb on + strand, within HMPREF1078_RS08105 at 185.692 kb on + strand, within HMPREF1078_RS08105 at 185.731 kb on + strand, within HMPREF1078_RS08105 at 185.764 kb on - strand, within HMPREF1078_RS08105 at 185.795 kb on - strand, within HMPREF1078_RS08105 at 185.821 kb on - strand, within HMPREF1078_RS08105 at 185.821 kb on - strand, within HMPREF1078_RS08105 at 186.071 kb on - strand, within HMPREF1078_RS08105 at 186.080 kb on - strand, within HMPREF1078_RS08105 at 186.084 kb on + strand, within HMPREF1078_RS08105 at 186.085 kb on - strand, within HMPREF1078_RS08105 at 186.085 kb on - strand, within HMPREF1078_RS08105 at 186.085 kb on - strand, within HMPREF1078_RS08105 at 186.097 kb on - strand, within HMPREF1078_RS08105 at 186.113 kb on + strand, within HMPREF1078_RS08105 at 186.113 kb on + strand, within HMPREF1078_RS08105 at 186.188 kb on - strand, within HMPREF1078_RS08105 at 186.190 kb on - strand, within HMPREF1078_RS08105 at 186.190 kb on - strand, within HMPREF1078_RS08105 at 186.214 kb on + strand, within HMPREF1078_RS08105 at 186.214 kb on + strand, within HMPREF1078_RS08105 at 186.215 kb on - strand, within HMPREF1078_RS08105 at 186.216 kb on + strand, within HMPREF1078_RS08105 at 186.229 kb on - strand, within HMPREF1078_RS08105 at 186.258 kb on - strand, within HMPREF1078_RS08105 at 186.258 kb on - strand, within HMPREF1078_RS08105
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/mL (C) remove 183,654 - -1.6 183,655 + -1.8 183,655 + +0.4 183,655 + -0.3 183,655 + +1.5 183,655 + -0.9 183,656 - -0.3 183,656 - -2.9 183,656 - -1.4 183,656 - -1.7 183,656 - +0.6 183,656 - +0.4 183,656 - -0.6 183,657 + +0.4 183,657 + -0.2 183,657 + +0.3 183,657 + +0.4 183,657 + +1.3 183,658 - -0.2 183,658 - -0.5 183,658 - -2.3 183,658 - -0.7 183,658 - -0.8 183,658 - -1.2 183,658 - +0.3 183,659 + +0.2 183,660 - -0.9 183,660 - -1.6 183,666 - -0.6 183,727 - -0.1 183,759 + +0.7 183,849 + +0.5 183,849 + +1.2 183,849 + -2.3 183,849 + -2.5 183,850 - +0.7 183,851 + +0.2 183,852 - -0.8 183,854 + -2.6 183,855 - -0.7 183,860 + -1.2 183,864 + +0.2 183,893 + +0.2 183,911 - -0.0 183,915 + -0.8 183,957 - +0.4 183,971 + +0.5 183,972 - -0.2 183,976 + -2.6 184,107 + HMPREF1078_RS08095 0.22 +0.9 184,108 - HMPREF1078_RS08095 0.22 -0.6 184,108 - HMPREF1078_RS08095 0.22 -2.7 184,108 - HMPREF1078_RS08095 0.22 -1.3 184,110 - HMPREF1078_RS08095 0.22 +0.4 184,110 - HMPREF1078_RS08095 0.22 +0.8 184,110 - HMPREF1078_RS08095 0.22 +0.9 184,125 - HMPREF1078_RS08095 0.24 +0.4 184,125 - HMPREF1078_RS08095 0.24 -1.5 184,297 + HMPREF1078_RS08095 0.49 -1.2 184,341 + HMPREF1078_RS08095 0.56 +0.8 184,341 + HMPREF1078_RS08095 0.56 +0.7 184,342 - HMPREF1078_RS08095 0.56 -0.3 184,352 + HMPREF1078_RS08095 0.57 -0.0 184,353 - HMPREF1078_RS08095 0.58 +0.4 184,490 + HMPREF1078_RS08095 0.78 +2.5 184,490 + HMPREF1078_RS08095 0.78 +0.1 184,524 + HMPREF1078_RS08095 0.83 +0.5 184,525 - HMPREF1078_RS08095 0.83 +0.2 184,525 - HMPREF1078_RS08095 0.83 -1.2 184,561 + HMPREF1078_RS08095 0.88 -0.0 184,567 - HMPREF1078_RS08095 0.89 -1.4 184,568 + HMPREF1078_RS08095 0.89 -1.4 184,615 - -2.7 184,615 - +2.2 184,620 - +0.2 184,640 - +0.4 184,646 + -0.7 184,647 - +1.0 184,699 + -3.6 184,699 + -1.8 184,699 + -2.1 184,700 - -1.4 184,700 - +0.2 184,704 - HMPREF1078_RS08100 0.10 -0.7 184,751 - HMPREF1078_RS08100 0.18 +1.0 184,753 - HMPREF1078_RS08100 0.18 +0.1 184,753 - HMPREF1078_RS08100 0.18 +0.2 184,798 + HMPREF1078_RS08100 0.25 -2.2 184,798 + HMPREF1078_RS08100 0.25 +0.8 184,799 - HMPREF1078_RS08100 0.25 +0.2 184,799 - HMPREF1078_RS08100 0.25 +1.1 184,850 - HMPREF1078_RS08100 0.33 -1.3 184,853 + HMPREF1078_RS08100 0.34 -0.1 184,853 + HMPREF1078_RS08100 0.34 +0.1 184,854 - HMPREF1078_RS08100 0.34 -0.7 184,886 + HMPREF1078_RS08100 0.39 -2.4 184,886 + HMPREF1078_RS08100 0.39 -2.7 184,886 + HMPREF1078_RS08100 0.39 +0.0 184,888 + HMPREF1078_RS08100 0.39 +1.1 184,934 + HMPREF1078_RS08100 0.47 -2.4 184,952 + HMPREF1078_RS08100 0.50 -2.9 184,953 - HMPREF1078_RS08100 0.50 -1.3 184,991 + HMPREF1078_RS08100 0.56 -1.3 184,992 - HMPREF1078_RS08100 0.56 +0.3 185,034 + HMPREF1078_RS08100 0.63 -0.3 185,034 + HMPREF1078_RS08100 0.63 -2.3 185,034 + HMPREF1078_RS08100 0.63 +0.8 185,034 + HMPREF1078_RS08100 0.63 -0.3 185,035 - HMPREF1078_RS08100 0.63 +0.5 185,135 + HMPREF1078_RS08100 0.79 -0.3 185,136 - HMPREF1078_RS08100 0.79 +0.0 185,136 - HMPREF1078_RS08100 0.79 +0.3 185,147 + HMPREF1078_RS08100 0.80 -1.4 185,148 - HMPREF1078_RS08100 0.81 -2.4 185,148 - HMPREF1078_RS08100 0.81 +0.5 185,166 + HMPREF1078_RS08100 0.83 +0.1 185,166 + HMPREF1078_RS08100 0.83 +0.5 185,169 - HMPREF1078_RS08100 0.84 -1.3 185,314 + -2.1 185,315 - -0.3 185,322 + -0.4 185,323 - -0.0 185,368 - -1.3 185,386 - -2.3 185,387 + +0.6 185,387 + +0.5 185,388 - -3.8 185,388 - +1.2 185,403 - +3.1 185,452 + +0.8 185,453 - -1.3 185,550 + HMPREF1078_RS08105 0.17 -0.0 185,550 + HMPREF1078_RS08105 0.17 -1.9 185,692 + HMPREF1078_RS08105 0.28 -1.6 185,692 + HMPREF1078_RS08105 0.28 -1.9 185,731 + HMPREF1078_RS08105 0.31 -0.2 185,764 - HMPREF1078_RS08105 0.33 -1.7 185,795 - HMPREF1078_RS08105 0.35 +0.6 185,821 - HMPREF1078_RS08105 0.37 -0.8 185,821 - HMPREF1078_RS08105 0.37 +0.7 186,071 - HMPREF1078_RS08105 0.56 +0.2 186,080 - HMPREF1078_RS08105 0.57 +0.4 186,084 + HMPREF1078_RS08105 0.57 +0.9 186,085 - HMPREF1078_RS08105 0.57 -3.1 186,085 - HMPREF1078_RS08105 0.57 +0.5 186,085 - HMPREF1078_RS08105 0.57 +0.7 186,097 - HMPREF1078_RS08105 0.58 -0.4 186,113 + HMPREF1078_RS08105 0.59 -1.7 186,113 + HMPREF1078_RS08105 0.59 +0.5 186,188 - HMPREF1078_RS08105 0.65 -1.2 186,190 - HMPREF1078_RS08105 0.65 +0.4 186,190 - HMPREF1078_RS08105 0.65 -0.4 186,214 + HMPREF1078_RS08105 0.67 +1.5 186,214 + HMPREF1078_RS08105 0.67 -1.4 186,215 - HMPREF1078_RS08105 0.67 -2.7 186,216 + HMPREF1078_RS08105 0.67 -2.5 186,229 - HMPREF1078_RS08105 0.68 -0.1 186,258 - HMPREF1078_RS08105 0.70 +1.1 186,258 - HMPREF1078_RS08105 0.70 +0.2
Or see this region's nucleotide sequence