Experiment: Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05685 and HMPREF1078_RS05690 are separated by 153 nucleotides HMPREF1078_RS05690 and HMPREF1078_RS05695 are separated by 108 nucleotides HMPREF1078_RS05695 and HMPREF1078_RS05700 are separated by 65 nucleotides
HMPREF1078_RS05685: HMPREF1078_RS05685 - FecR family protein, at 446,935 to 447,930
_RS05685
HMPREF1078_RS05690: HMPREF1078_RS05690 - RNA polymerase sigma-70 factor, at 448,084 to 448,638
_RS05690
HMPREF1078_RS05695: HMPREF1078_RS05695 - transcriptional repressor, at 448,747 to 449,175
_RS05695
HMPREF1078_RS05700: HMPREF1078_RS05700 - heavy metal translocating P-type ATPase, at 449,241 to 451,175
_RS05700
Position (kb) 448
449 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 447.149 kb on + strand, within HMPREF1078_RS05685 at 447.170 kb on + strand, within HMPREF1078_RS05685 at 447.205 kb on - strand, within HMPREF1078_RS05685 at 447.205 kb on - strand, within HMPREF1078_RS05685 at 447.274 kb on + strand, within HMPREF1078_RS05685 at 447.275 kb on - strand, within HMPREF1078_RS05685 at 447.340 kb on + strand, within HMPREF1078_RS05685 at 447.341 kb on - strand, within HMPREF1078_RS05685 at 447.345 kb on + strand, within HMPREF1078_RS05685 at 447.346 kb on - strand, within HMPREF1078_RS05685 at 447.346 kb on - strand, within HMPREF1078_RS05685 at 447.394 kb on - strand, within HMPREF1078_RS05685 at 447.583 kb on + strand, within HMPREF1078_RS05685 at 447.583 kb on + strand, within HMPREF1078_RS05685 at 447.583 kb on + strand, within HMPREF1078_RS05685 at 447.602 kb on - strand, within HMPREF1078_RS05685 at 447.655 kb on + strand, within HMPREF1078_RS05685 at 447.684 kb on - strand, within HMPREF1078_RS05685 at 447.721 kb on + strand, within HMPREF1078_RS05685 at 447.721 kb on + strand, within HMPREF1078_RS05685 at 447.804 kb on + strand, within HMPREF1078_RS05685 at 447.804 kb on + strand, within HMPREF1078_RS05685 at 447.805 kb on - strand, within HMPREF1078_RS05685 at 447.805 kb on - strand, within HMPREF1078_RS05685 at 447.805 kb on - strand, within HMPREF1078_RS05685 at 447.898 kb on + strand at 447.898 kb on + strand at 447.910 kb on + strand at 447.913 kb on - strand at 447.945 kb on + strand at 447.945 kb on + strand at 447.986 kb on + strand at 448.078 kb on + strand at 448.200 kb on + strand, within HMPREF1078_RS05690 at 448.385 kb on + strand, within HMPREF1078_RS05690 at 448.556 kb on + strand, within HMPREF1078_RS05690 at 448.720 kb on + strand at 448.790 kb on + strand, within HMPREF1078_RS05695 at 448.843 kb on + strand, within HMPREF1078_RS05695 at 448.914 kb on - strand, within HMPREF1078_RS05695 at 448.976 kb on - strand, within HMPREF1078_RS05695 at 449.026 kb on - strand, within HMPREF1078_RS05695 at 449.064 kb on + strand, within HMPREF1078_RS05695 at 449.065 kb on - strand, within HMPREF1078_RS05695 at 449.197 kb on + strand at 449.285 kb on + strand at 449.286 kb on - strand at 449.286 kb on - strand at 449.286 kb on - strand at 449.360 kb on - strand at 449.572 kb on - strand, within HMPREF1078_RS05700
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/mL (C) remove 447,149 + HMPREF1078_RS05685 0.21 -0.7 447,170 + HMPREF1078_RS05685 0.24 -1.1 447,205 - HMPREF1078_RS05685 0.27 -0.4 447,205 - HMPREF1078_RS05685 0.27 +0.5 447,274 + HMPREF1078_RS05685 0.34 -0.5 447,275 - HMPREF1078_RS05685 0.34 +0.1 447,340 + HMPREF1078_RS05685 0.41 -2.4 447,341 - HMPREF1078_RS05685 0.41 -0.7 447,345 + HMPREF1078_RS05685 0.41 -1.7 447,346 - HMPREF1078_RS05685 0.41 +0.9 447,346 - HMPREF1078_RS05685 0.41 +0.7 447,394 - HMPREF1078_RS05685 0.46 +0.1 447,583 + HMPREF1078_RS05685 0.65 -0.4 447,583 + HMPREF1078_RS05685 0.65 +0.6 447,583 + HMPREF1078_RS05685 0.65 -0.1 447,602 - HMPREF1078_RS05685 0.67 +0.8 447,655 + HMPREF1078_RS05685 0.72 -2.1 447,684 - HMPREF1078_RS05685 0.75 -0.7 447,721 + HMPREF1078_RS05685 0.79 -1.6 447,721 + HMPREF1078_RS05685 0.79 +0.3 447,804 + HMPREF1078_RS05685 0.87 +0.7 447,804 + HMPREF1078_RS05685 0.87 +0.1 447,805 - HMPREF1078_RS05685 0.87 +1.6 447,805 - HMPREF1078_RS05685 0.87 -0.7 447,805 - HMPREF1078_RS05685 0.87 -0.9 447,898 + +0.3 447,898 + -1.6 447,910 + +0.5 447,913 - -0.4 447,945 + +1.9 447,945 + -0.1 447,986 + -2.3 448,078 + +0.5 448,200 + HMPREF1078_RS05690 0.21 +1.7 448,385 + HMPREF1078_RS05690 0.54 -0.1 448,556 + HMPREF1078_RS05690 0.85 +0.9 448,720 + +0.5 448,790 + HMPREF1078_RS05695 0.10 -0.3 448,843 + HMPREF1078_RS05695 0.22 -1.2 448,914 - HMPREF1078_RS05695 0.39 -0.8 448,976 - HMPREF1078_RS05695 0.53 -1.1 449,026 - HMPREF1078_RS05695 0.65 +0.4 449,064 + HMPREF1078_RS05695 0.74 +0.0 449,065 - HMPREF1078_RS05695 0.74 -0.4 449,197 + -0.2 449,285 + -0.1 449,286 - -3.7 449,286 - -0.3 449,286 - -0.3 449,360 - -1.2 449,572 - HMPREF1078_RS05700 0.17 +0.8
Or see this region's nucleotide sequence