Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS04850

Experiment: Pectin from citrus peel; autoclaved 2.5 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
220,157	+		HMPREF1078_RS04840	0.90	-2.0
220,157	+		HMPREF1078_RS04840	0.90	-1.2
220,172	-				-4.0
220,228	+				-2.9
220,233	+				-0.2
220,255	+				+0.9
220,255	+				-2.1
220,255	+				+1.0
220,255	+				-1.0
220,256	-				-2.3
220,259	+				-1.9
220,259	+				-0.2
220,300	+				-2.5
220,300	+				-1.6
220,301	-				-2.3
220,301	-				-0.0
220,301	-				-1.7
220,363	+				-2.2
220,368	-				-2.3
220,368	-				-0.8
220,429	+				-2.4
220,429	+				-2.1
220,437	-				-1.7
220,488	+				-2.4
220,488	+				-2.1
220,488	+				-0.8
220,489	-				-3.0
220,489	-				-1.6
220,518	+				+0.3
220,518	+				-2.1
220,555	+				+0.0
220,555	+				+1.6
220,555	+				-2.1
220,558	-				+0.8
220,558	-				+2.1
220,629	-		HMPREF1078_RS04845	0.18	-0.1
220,629	-		HMPREF1078_RS04845	0.18	+1.1
220,656	+		HMPREF1078_RS04845	0.23	-0.5
220,656	+		HMPREF1078_RS04845	0.23	-0.7
220,687	+		HMPREF1078_RS04845	0.28	+1.3
220,688	-		HMPREF1078_RS04845	0.28	-0.5
220,697	-		HMPREF1078_RS04845	0.29	+1.0
220,723	+		HMPREF1078_RS04845	0.33	-2.2
220,946	+		HMPREF1078_RS04845	0.70	-1.4
221,045	-		HMPREF1078_RS04845	0.86	+0.6
221,054	-		HMPREF1078_RS04845	0.87	-0.8
221,104	-				+0.4
221,115	-				-3.5
221,132	-				+0.2
221,133	+				-1.8
221,133	+				+0.9
221,134	-				-1.1
221,184	+				+0.3
221,184	+				+1.7
221,184	+				-2.1
221,184	+				+0.0
221,185	-				-1.0
221,185	-				-1.8
221,185	-				-1.2
221,185	-				+1.8
221,189	-				-0.2
221,189	-				-0.7
221,189	-				-0.4
221,189	-				-1.7
221,189	-				+0.4
221,195	-				+1.0
221,195	-				-0.1
221,195	-				-0.2
221,195	-				+0.2
221,338	-		HMPREF1078_RS04850	0.31	-2.8
221,515	+		HMPREF1078_RS04850	0.58	-2.6
221,600	-		HMPREF1078_RS04850	0.71	+0.3
221,666	-		HMPREF1078_RS04850	0.82	+0.4
221,672	+		HMPREF1078_RS04850	0.82	-0.8
221,718	+		HMPREF1078_RS04850	0.90	-2.2
221,718	+		HMPREF1078_RS04850	0.90	-1.2
221,800	+				-0.2
221,800	+				-0.9
221,801	-				-3.3
221,806	-				-2.0
221,907	+				-3.1
221,909	+				-1.0
221,910	-				-0.1
221,936	+				-1.8
221,937	-				-0.7
221,937	-				+0.9
221,939	+				-1.6
221,987	+				+0.1
221,991	+				-2.3
221,992	-				-2.5
222,007	+				+0.2
222,016	-				-1.8
222,048	-				-2.3
222,053	-				-0.2
222,164	+				-0.0
222,164	+				+0.0
222,165	-				-4.4
222,185	+				+1.0
222,186	-				-0.6
222,376	+				+0.2
222,382	+				-0.3
222,406	-				+1.2
222,469	+				+0.3
222,472	+				+1.1
222,488	-				+0.1
222,505	-				+0.3
222,521	-				-2.6
222,528	+				+0.2
222,528	+				+0.0
222,606	+				+0.7
222,731	+				-0.4
222,732	-				+1.0
222,732	-				-1.3
222,734	+				-0.2
222,735	-				-0.7
222,738	-				+1.4
222,738	-				+1.1
222,741	-				+0.4