Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS04830

Experiment: Pectin from citrus peel; autoclaved 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS04825 and HMPREF1078_RS04830 are separated by 1 nucleotidesHMPREF1078_RS04830 and HMPREF1078_RS04835 are separated by 9 nucleotides HMPREF1078_RS04825: HMPREF1078_RS04825 - decaprenyl-phosphate phosphoribosyltransferase, at 214,367 to 215,263 _RS04825 HMPREF1078_RS04830: HMPREF1078_RS04830 - HAD-IB family hydrolase, at 215,265 to 215,858 _RS04830 HMPREF1078_RS04835: HMPREF1078_RS04835 - DUF6080 domain-containing protein, at 215,868 to 217,148 _RS04835 Position (kb) 215 216Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 214.330 kb on + strandat 214.377 kb on + strandat 214.378 kb on - strandat 214.404 kb on + strandat 214.447 kb on - strandat 214.447 kb on - strandat 214.548 kb on + strand, within HMPREF1078_RS04825at 214.548 kb on + strand, within HMPREF1078_RS04825at 214.549 kb on - strand, within HMPREF1078_RS04825at 214.549 kb on - strand, within HMPREF1078_RS04825at 214.550 kb on + strand, within HMPREF1078_RS04825at 214.551 kb on - strand, within HMPREF1078_RS04825at 214.668 kb on + strand, within HMPREF1078_RS04825at 214.669 kb on - strand, within HMPREF1078_RS04825at 214.670 kb on + strand, within HMPREF1078_RS04825at 214.686 kb on + strand, within HMPREF1078_RS04825at 214.686 kb on + strand, within HMPREF1078_RS04825at 214.687 kb on - strand, within HMPREF1078_RS04825at 214.742 kb on + strand, within HMPREF1078_RS04825at 214.742 kb on + strand, within HMPREF1078_RS04825at 214.742 kb on + strand, within HMPREF1078_RS04825at 214.743 kb on - strand, within HMPREF1078_RS04825at 214.744 kb on + strand, within HMPREF1078_RS04825at 214.745 kb on - strand, within HMPREF1078_RS04825at 214.745 kb on - strand, within HMPREF1078_RS04825at 214.745 kb on - strand, within HMPREF1078_RS04825at 214.759 kb on - strand, within HMPREF1078_RS04825at 214.765 kb on + strand, within HMPREF1078_RS04825at 214.765 kb on + strand, within HMPREF1078_RS04825at 214.765 kb on + strand, within HMPREF1078_RS04825at 214.786 kb on - strand, within HMPREF1078_RS04825at 214.794 kb on + strand, within HMPREF1078_RS04825at 214.795 kb on - strand, within HMPREF1078_RS04825at 214.990 kb on + strand, within HMPREF1078_RS04825at 214.990 kb on + strand, within HMPREF1078_RS04825at 214.991 kb on - strand, within HMPREF1078_RS04825at 215.048 kb on + strand, within HMPREF1078_RS04825at 215.048 kb on + strand, within HMPREF1078_RS04825at 215.049 kb on - strand, within HMPREF1078_RS04825at 215.052 kb on + strand, within HMPREF1078_RS04825at 215.052 kb on + strand, within HMPREF1078_RS04825at 215.053 kb on - strand, within HMPREF1078_RS04825at 215.057 kb on + strand, within HMPREF1078_RS04825at 215.057 kb on + strand, within HMPREF1078_RS04825at 215.097 kb on - strand, within HMPREF1078_RS04825at 215.102 kb on + strand, within HMPREF1078_RS04825at 215.102 kb on + strand, within HMPREF1078_RS04825at 215.103 kb on - strand, within HMPREF1078_RS04825at 215.196 kb on + strandat 215.255 kb on - strandat 215.378 kb on + strand, within HMPREF1078_RS04830at 215.511 kb on - strand, within HMPREF1078_RS04830at 215.669 kb on + strand, within HMPREF1078_RS04830at 215.779 kb on + strand, within HMPREF1078_RS04830at 215.779 kb on + strand, within HMPREF1078_RS04830at 215.779 kb on + strand, within HMPREF1078_RS04830at 215.779 kb on + strand, within HMPREF1078_RS04830at 215.779 kb on + strand, within HMPREF1078_RS04830at 215.780 kb on - strand, within HMPREF1078_RS04830at 215.780 kb on - strand, within HMPREF1078_RS04830at 215.780 kb on - strand, within HMPREF1078_RS04830at 215.838 kb on - strandat 215.857 kb on - strandat 215.862 kb on + strandat 215.862 kb on + strandat 215.863 kb on - strandat 215.864 kb on + strandat 215.864 kb on + strandat 215.867 kb on + strandat 215.867 kb on + strandat 215.867 kb on + strandat 215.868 kb on - strandat 215.868 kb on - strandat 215.868 kb on - strandat 215.927 kb on + strandat 216.024 kb on - strand, within HMPREF1078_RS04835at 216.040 kb on + strand, within HMPREF1078_RS04835at 216.068 kb on - strand, within HMPREF1078_RS04835at 216.082 kb on + strand, within HMPREF1078_RS04835at 216.083 kb on - strand, within HMPREF1078_RS04835at 216.238 kb on + strand, within HMPREF1078_RS04835at 216.311 kb on - strand, within HMPREF1078_RS04835at 216.352 kb on + strand, within HMPREF1078_RS04835at 216.444 kb on - strand, within HMPREF1078_RS04835at 216.444 kb on - strand, within HMPREF1078_RS04835at 216.445 kb on + strand, within HMPREF1078_RS04835at 216.445 kb on + strand, within HMPREF1078_RS04835at 216.446 kb on - strand, within HMPREF1078_RS04835at 216.536 kb on + strand, within HMPREF1078_RS04835at 216.693 kb on + strand, within HMPREF1078_RS04835at 216.756 kb on - strand, within HMPREF1078_RS04835at 216.800 kb on - strand, within HMPREF1078_RS04835

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
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214,330 + -0.4
214,377 + -0.6
214,378 - +0.7
214,404 + -0.6
214,447 - +0.6
214,447 - +0.5
214,548 + HMPREF1078_RS04825 0.20 -2.3
214,548 + HMPREF1078_RS04825 0.20 +0.5
214,549 - HMPREF1078_RS04825 0.20 -0.3
214,549 - HMPREF1078_RS04825 0.20 -1.1
214,550 + HMPREF1078_RS04825 0.20 -1.6
214,551 - HMPREF1078_RS04825 0.21 -1.7
214,668 + HMPREF1078_RS04825 0.34 -0.1
214,669 - HMPREF1078_RS04825 0.34 -1.9
214,670 + HMPREF1078_RS04825 0.34 +0.7
214,686 + HMPREF1078_RS04825 0.36 -2.2
214,686 + HMPREF1078_RS04825 0.36 +0.5
214,687 - HMPREF1078_RS04825 0.36 +1.1
214,742 + HMPREF1078_RS04825 0.42 +1.2
214,742 + HMPREF1078_RS04825 0.42 -0.2
214,742 + HMPREF1078_RS04825 0.42 -2.6
214,743 - HMPREF1078_RS04825 0.42 -0.6
214,744 + HMPREF1078_RS04825 0.42 +1.0
214,745 - HMPREF1078_RS04825 0.42 +1.9
214,745 - HMPREF1078_RS04825 0.42 +0.2
214,745 - HMPREF1078_RS04825 0.42 +0.4
214,759 - HMPREF1078_RS04825 0.44 -0.0
214,765 + HMPREF1078_RS04825 0.44 -0.6
214,765 + HMPREF1078_RS04825 0.44 +0.8
214,765 + HMPREF1078_RS04825 0.44 -2.7
214,786 - HMPREF1078_RS04825 0.47 -1.3
214,794 + HMPREF1078_RS04825 0.48 -0.4
214,795 - HMPREF1078_RS04825 0.48 -0.7
214,990 + HMPREF1078_RS04825 0.69 -1.6
214,990 + HMPREF1078_RS04825 0.69 +0.5
214,991 - HMPREF1078_RS04825 0.70 -0.2
215,048 + HMPREF1078_RS04825 0.76 +0.3
215,048 + HMPREF1078_RS04825 0.76 -0.5
215,049 - HMPREF1078_RS04825 0.76 -1.4
215,052 + HMPREF1078_RS04825 0.76 -1.0
215,052 + HMPREF1078_RS04825 0.76 +0.4
215,053 - HMPREF1078_RS04825 0.76 -0.5
215,057 + HMPREF1078_RS04825 0.77 -0.8
215,057 + HMPREF1078_RS04825 0.77 +0.4
215,097 - HMPREF1078_RS04825 0.81 -0.6
215,102 + HMPREF1078_RS04825 0.82 +1.2
215,102 + HMPREF1078_RS04825 0.82 -0.5
215,103 - HMPREF1078_RS04825 0.82 +0.4
215,196 + -1.1
215,255 - -0.9
215,378 + HMPREF1078_RS04830 0.19 -0.8
215,511 - HMPREF1078_RS04830 0.41 -2.9
215,669 + HMPREF1078_RS04830 0.68 -0.4
215,779 + HMPREF1078_RS04830 0.87 -1.2
215,779 + HMPREF1078_RS04830 0.87 +0.2
215,779 + HMPREF1078_RS04830 0.87 +0.3
215,779 + HMPREF1078_RS04830 0.87 -0.6
215,779 + HMPREF1078_RS04830 0.87 -0.0
215,780 - HMPREF1078_RS04830 0.87 -1.5
215,780 - HMPREF1078_RS04830 0.87 -1.5
215,780 - HMPREF1078_RS04830 0.87 +0.8
215,838 - +1.6
215,857 - -0.7
215,862 + -0.1
215,862 + -0.4
215,863 - +0.4
215,864 + -0.5
215,864 + -1.6
215,867 + +0.4
215,867 + -0.2
215,867 + -0.7
215,868 - +0.2
215,868 - +0.5
215,868 - -1.2
215,927 + +0.4
216,024 - HMPREF1078_RS04835 0.12 +0.2
216,040 + HMPREF1078_RS04835 0.13 +0.2
216,068 - HMPREF1078_RS04835 0.16 +1.3
216,082 + HMPREF1078_RS04835 0.17 +1.0
216,083 - HMPREF1078_RS04835 0.17 -1.1
216,238 + HMPREF1078_RS04835 0.29 -1.0
216,311 - HMPREF1078_RS04835 0.35 -0.2
216,352 + HMPREF1078_RS04835 0.38 -0.6
216,444 - HMPREF1078_RS04835 0.45 -0.7
216,444 - HMPREF1078_RS04835 0.45 +0.6
216,445 + HMPREF1078_RS04835 0.45 +0.1
216,445 + HMPREF1078_RS04835 0.45 -0.3
216,446 - HMPREF1078_RS04835 0.45 -0.5
216,536 + HMPREF1078_RS04835 0.52 -1.3
216,693 + HMPREF1078_RS04835 0.64 +0.2
216,756 - HMPREF1078_RS04835 0.69 -0.3
216,800 - HMPREF1078_RS04835 0.73 -0.3

Or see this region's nucleotide sequence