Experiment: Mucin from porcine stomach type II 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13635 and HMPREF1078_RS13640 are separated by 24 nucleotides HMPREF1078_RS13640 and HMPREF1078_RS13645 are separated by 132 nucleotides HMPREF1078_RS13645 and HMPREF1078_RS13650 are separated by 68 nucleotides
HMPREF1078_RS13635: HMPREF1078_RS13635 - mannonate dehydratase, at 175,247 to 176,419
_RS13635
HMPREF1078_RS13640: HMPREF1078_RS13640 - SDR family oxidoreductase, at 176,444 to 177,256
_RS13640
HMPREF1078_RS13645: HMPREF1078_RS13645 - LacI family DNA-binding transcriptional regulator, at 177,389 to 178,444
_RS13645
HMPREF1078_RS13650: HMPREF1078_RS13650 - hypothetical protein, at 178,513 to 179,151
_RS13650
Position (kb) 177
178
179 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 176.415 kb on + strand at 176.416 kb on - strand at 176.416 kb on - strand at 176.419 kb on + strand at 176.419 kb on + strand at 176.420 kb on - strand at 176.420 kb on - strand at 176.445 kb on + strand at 176.450 kb on - strand at 176.475 kb on - strand at 176.523 kb on + strand at 176.554 kb on + strand, within HMPREF1078_RS13640 at 176.575 kb on + strand, within HMPREF1078_RS13640 at 176.576 kb on - strand, within HMPREF1078_RS13640 at 176.576 kb on - strand, within HMPREF1078_RS13640 at 176.635 kb on + strand, within HMPREF1078_RS13640 at 176.763 kb on + strand, within HMPREF1078_RS13640 at 176.855 kb on + strand, within HMPREF1078_RS13640 at 176.855 kb on + strand, within HMPREF1078_RS13640 at 176.895 kb on - strand, within HMPREF1078_RS13640 at 176.965 kb on + strand, within HMPREF1078_RS13640 at 176.998 kb on + strand, within HMPREF1078_RS13640 at 176.999 kb on - strand, within HMPREF1078_RS13640 at 177.020 kb on - strand, within HMPREF1078_RS13640 at 177.020 kb on - strand, within HMPREF1078_RS13640 at 177.020 kb on - strand, within HMPREF1078_RS13640 at 177.053 kb on + strand, within HMPREF1078_RS13640 at 177.053 kb on + strand, within HMPREF1078_RS13640 at 177.054 kb on - strand, within HMPREF1078_RS13640 at 177.091 kb on + strand, within HMPREF1078_RS13640 at 177.108 kb on - strand, within HMPREF1078_RS13640 at 177.146 kb on - strand, within HMPREF1078_RS13640 at 177.155 kb on - strand, within HMPREF1078_RS13640 at 177.184 kb on + strand at 177.185 kb on - strand at 177.214 kb on + strand at 177.218 kb on - strand at 177.257 kb on - strand at 177.269 kb on + strand at 177.292 kb on + strand at 177.292 kb on + strand at 177.293 kb on - strand at 177.296 kb on - strand at 177.394 kb on + strand at 177.396 kb on + strand at 177.397 kb on - strand at 177.404 kb on - strand at 177.404 kb on - strand at 177.406 kb on - strand at 177.408 kb on + strand at 177.408 kb on + strand at 177.445 kb on + strand at 177.448 kb on - strand at 177.468 kb on + strand at 177.501 kb on - strand, within HMPREF1078_RS13645 at 177.501 kb on - strand, within HMPREF1078_RS13645 at 177.563 kb on + strand, within HMPREF1078_RS13645 at 177.589 kb on + strand, within HMPREF1078_RS13645 at 177.595 kb on - strand, within HMPREF1078_RS13645 at 177.634 kb on - strand, within HMPREF1078_RS13645 at 177.644 kb on + strand, within HMPREF1078_RS13645 at 177.645 kb on - strand, within HMPREF1078_RS13645 at 177.665 kb on + strand, within HMPREF1078_RS13645 at 177.666 kb on - strand, within HMPREF1078_RS13645 at 177.666 kb on - strand, within HMPREF1078_RS13645 at 177.666 kb on - strand, within HMPREF1078_RS13645 at 177.707 kb on - strand, within HMPREF1078_RS13645 at 177.714 kb on - strand, within HMPREF1078_RS13645 at 177.719 kb on + strand, within HMPREF1078_RS13645 at 177.720 kb on - strand, within HMPREF1078_RS13645 at 177.720 kb on - strand, within HMPREF1078_RS13645 at 177.747 kb on - strand, within HMPREF1078_RS13645 at 177.747 kb on - strand, within HMPREF1078_RS13645 at 177.747 kb on - strand, within HMPREF1078_RS13645 at 177.759 kb on + strand, within HMPREF1078_RS13645 at 177.759 kb on + strand, within HMPREF1078_RS13645 at 177.763 kb on + strand, within HMPREF1078_RS13645 at 177.763 kb on + strand, within HMPREF1078_RS13645 at 177.763 kb on + strand, within HMPREF1078_RS13645 at 177.763 kb on + strand, within HMPREF1078_RS13645 at 177.774 kb on + strand, within HMPREF1078_RS13645 at 177.792 kb on + strand, within HMPREF1078_RS13645 at 177.830 kb on + strand, within HMPREF1078_RS13645 at 177.830 kb on + strand, within HMPREF1078_RS13645 at 177.898 kb on - strand, within HMPREF1078_RS13645 at 177.930 kb on + strand, within HMPREF1078_RS13645 at 177.931 kb on - strand, within HMPREF1078_RS13645 at 177.937 kb on + strand, within HMPREF1078_RS13645 at 177.989 kb on + strand, within HMPREF1078_RS13645 at 177.989 kb on + strand, within HMPREF1078_RS13645 at 177.989 kb on + strand, within HMPREF1078_RS13645 at 177.990 kb on - strand, within HMPREF1078_RS13645 at 177.990 kb on - strand, within HMPREF1078_RS13645 at 177.990 kb on - strand, within HMPREF1078_RS13645 at 177.990 kb on - strand, within HMPREF1078_RS13645 at 177.990 kb on - strand, within HMPREF1078_RS13645 at 177.990 kb on - strand, within HMPREF1078_RS13645 at 177.990 kb on - strand, within HMPREF1078_RS13645 at 177.993 kb on + strand, within HMPREF1078_RS13645 at 177.993 kb on + strand, within HMPREF1078_RS13645 at 177.993 kb on + strand, within HMPREF1078_RS13645 at 177.993 kb on + strand, within HMPREF1078_RS13645 at 177.993 kb on + strand, within HMPREF1078_RS13645 at 177.993 kb on + strand, within HMPREF1078_RS13645 at 177.994 kb on - strand, within HMPREF1078_RS13645 at 177.994 kb on - strand, within HMPREF1078_RS13645 at 177.994 kb on - strand, within HMPREF1078_RS13645 at 177.994 kb on - strand, within HMPREF1078_RS13645 at 177.994 kb on - strand, within HMPREF1078_RS13645 at 177.994 kb on - strand, within HMPREF1078_RS13645 at 178.005 kb on - strand, within HMPREF1078_RS13645 at 178.005 kb on - strand, within HMPREF1078_RS13645 at 178.125 kb on + strand, within HMPREF1078_RS13645 at 178.141 kb on + strand, within HMPREF1078_RS13645 at 178.142 kb on - strand, within HMPREF1078_RS13645 at 178.142 kb on - strand, within HMPREF1078_RS13645 at 178.142 kb on - strand, within HMPREF1078_RS13645 at 178.142 kb on - strand, within HMPREF1078_RS13645 at 178.161 kb on + strand, within HMPREF1078_RS13645 at 178.187 kb on - strand, within HMPREF1078_RS13645 at 178.229 kb on - strand, within HMPREF1078_RS13645 at 178.258 kb on - strand, within HMPREF1078_RS13645 at 178.374 kb on - strand at 178.429 kb on + strand at 178.429 kb on + strand at 178.431 kb on + strand at 178.431 kb on + strand at 178.431 kb on + strand at 178.432 kb on - strand at 178.432 kb on - strand at 178.439 kb on - strand at 178.444 kb on + strand at 178.444 kb on + strand at 178.445 kb on - strand at 178.457 kb on + strand at 178.457 kb on + strand at 178.458 kb on - strand at 178.458 kb on - strand at 178.458 kb on - strand at 178.460 kb on - strand at 178.460 kb on - strand at 178.478 kb on - strand at 178.498 kb on - strand at 178.498 kb on - strand at 178.511 kb on + strand at 178.511 kb on + strand at 178.511 kb on + strand at 178.512 kb on - strand at 178.512 kb on - strand at 178.514 kb on + strand at 178.514 kb on + strand at 178.515 kb on - strand at 178.515 kb on - strand at 178.515 kb on - strand at 178.516 kb on + strand at 178.516 kb on + strand at 178.516 kb on + strand at 178.516 kb on + strand at 178.516 kb on + strand at 178.516 kb on + strand at 178.517 kb on - strand at 178.517 kb on - strand at 178.553 kb on - strand at 178.581 kb on + strand, within HMPREF1078_RS13650 at 178.581 kb on + strand, within HMPREF1078_RS13650 at 178.581 kb on + strand, within HMPREF1078_RS13650 at 178.582 kb on - strand, within HMPREF1078_RS13650 at 178.582 kb on - strand, within HMPREF1078_RS13650 at 178.582 kb on - strand, within HMPREF1078_RS13650 at 178.583 kb on + strand, within HMPREF1078_RS13650 at 178.583 kb on + strand, within HMPREF1078_RS13650 at 178.584 kb on - strand, within HMPREF1078_RS13650 at 178.584 kb on - strand, within HMPREF1078_RS13650 at 178.587 kb on + strand, within HMPREF1078_RS13650 at 178.588 kb on - strand, within HMPREF1078_RS13650 at 178.726 kb on - strand, within HMPREF1078_RS13650 at 178.751 kb on + strand, within HMPREF1078_RS13650 at 178.751 kb on + strand, within HMPREF1078_RS13650 at 178.751 kb on + strand, within HMPREF1078_RS13650 at 178.751 kb on + strand, within HMPREF1078_RS13650 at 178.752 kb on - strand, within HMPREF1078_RS13650 at 178.752 kb on - strand, within HMPREF1078_RS13650 at 178.752 kb on - strand, within HMPREF1078_RS13650 at 178.785 kb on - strand, within HMPREF1078_RS13650 at 178.785 kb on - strand, within HMPREF1078_RS13650 at 178.785 kb on - strand, within HMPREF1078_RS13650 at 178.785 kb on - strand, within HMPREF1078_RS13650 at 178.804 kb on + strand, within HMPREF1078_RS13650 at 178.842 kb on + strand, within HMPREF1078_RS13650 at 178.851 kb on + strand, within HMPREF1078_RS13650 at 178.852 kb on - strand, within HMPREF1078_RS13650 at 178.856 kb on + strand, within HMPREF1078_RS13650 at 178.857 kb on - strand, within HMPREF1078_RS13650 at 178.857 kb on - strand, within HMPREF1078_RS13650 at 179.035 kb on - strand, within HMPREF1078_RS13650 at 179.035 kb on - strand, within HMPREF1078_RS13650 at 179.035 kb on - strand, within HMPREF1078_RS13650 at 179.057 kb on + strand, within HMPREF1078_RS13650 at 179.103 kb on - strand at 179.137 kb on - strand at 179.137 kb on - strand at 179.151 kb on + strand at 179.152 kb on - strand at 179.162 kb on + strand at 179.163 kb on - strand at 179.167 kb on - strand at 179.173 kb on + strand at 179.175 kb on + strand at 179.183 kb on - strand at 179.231 kb on + strand at 179.276 kb on + strand at 179.276 kb on + strand at 179.277 kb on - strand at 179.277 kb on - strand at 179.277 kb on - strand at 179.295 kb on + strand at 179.328 kb on - strand at 179.343 kb on - strand at 179.358 kb on + strand at 179.358 kb on + strand at 179.384 kb on + strand at 179.384 kb on + strand at 179.384 kb on + strand at 179.385 kb on - strand at 179.389 kb on + strand at 179.390 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/mL (C) remove 176,415 + -0.0 176,416 - +0.5 176,416 - -2.2 176,419 + -0.6 176,419 + -0.6 176,420 - -0.3 176,420 - -1.9 176,445 + +0.1 176,450 - -1.3 176,475 - -0.8 176,523 + +0.4 176,554 + HMPREF1078_RS13640 0.14 -0.4 176,575 + HMPREF1078_RS13640 0.16 -0.1 176,576 - HMPREF1078_RS13640 0.16 +0.2 176,576 - HMPREF1078_RS13640 0.16 -0.0 176,635 + HMPREF1078_RS13640 0.23 -0.5 176,763 + HMPREF1078_RS13640 0.39 -0.3 176,855 + HMPREF1078_RS13640 0.51 +1.4 176,855 + HMPREF1078_RS13640 0.51 -0.3 176,895 - HMPREF1078_RS13640 0.55 -0.7 176,965 + HMPREF1078_RS13640 0.64 +0.2 176,998 + HMPREF1078_RS13640 0.68 -1.6 176,999 - HMPREF1078_RS13640 0.68 +0.5 177,020 - HMPREF1078_RS13640 0.71 -0.4 177,020 - HMPREF1078_RS13640 0.71 -0.8 177,020 - HMPREF1078_RS13640 0.71 +0.1 177,053 + HMPREF1078_RS13640 0.75 -1.4 177,053 + HMPREF1078_RS13640 0.75 -1.1 177,054 - HMPREF1078_RS13640 0.75 +1.1 177,091 + HMPREF1078_RS13640 0.80 -0.7 177,108 - HMPREF1078_RS13640 0.82 -1.9 177,146 - HMPREF1078_RS13640 0.86 -0.6 177,155 - HMPREF1078_RS13640 0.87 -0.5 177,184 + +0.5 177,185 - -1.6 177,214 + -0.1 177,218 - -0.6 177,257 - -0.9 177,269 + +1.1 177,292 + +0.4 177,292 + +0.0 177,293 - +0.5 177,296 - -0.5 177,394 + +0.1 177,396 + +0.3 177,397 - -0.0 177,404 - -0.4 177,404 - +0.7 177,406 - -0.7 177,408 + -0.9 177,408 + +0.5 177,445 + -1.2 177,448 - -0.6 177,468 + -1.8 177,501 - HMPREF1078_RS13645 0.11 +0.3 177,501 - HMPREF1078_RS13645 0.11 -1.1 177,563 + HMPREF1078_RS13645 0.16 +0.4 177,589 + HMPREF1078_RS13645 0.19 +0.3 177,595 - HMPREF1078_RS13645 0.20 +0.1 177,634 - HMPREF1078_RS13645 0.23 -2.0 177,644 + HMPREF1078_RS13645 0.24 -1.1 177,645 - HMPREF1078_RS13645 0.24 -0.2 177,665 + HMPREF1078_RS13645 0.26 -0.3 177,666 - HMPREF1078_RS13645 0.26 +0.2 177,666 - HMPREF1078_RS13645 0.26 -0.6 177,666 - HMPREF1078_RS13645 0.26 +0.7 177,707 - HMPREF1078_RS13645 0.30 +0.1 177,714 - HMPREF1078_RS13645 0.31 -1.8 177,719 + HMPREF1078_RS13645 0.31 -1.6 177,720 - HMPREF1078_RS13645 0.31 +0.3 177,720 - HMPREF1078_RS13645 0.31 +0.2 177,747 - HMPREF1078_RS13645 0.34 +0.5 177,747 - HMPREF1078_RS13645 0.34 -2.2 177,747 - HMPREF1078_RS13645 0.34 -1.6 177,759 + HMPREF1078_RS13645 0.35 -1.1 177,759 + HMPREF1078_RS13645 0.35 -0.7 177,763 + HMPREF1078_RS13645 0.35 +2.1 177,763 + HMPREF1078_RS13645 0.35 +0.0 177,763 + HMPREF1078_RS13645 0.35 +0.4 177,763 + HMPREF1078_RS13645 0.35 -1.5 177,774 + HMPREF1078_RS13645 0.36 +0.5 177,792 + HMPREF1078_RS13645 0.38 +0.5 177,830 + HMPREF1078_RS13645 0.42 -0.2 177,830 + HMPREF1078_RS13645 0.42 +0.1 177,898 - HMPREF1078_RS13645 0.48 -0.1 177,930 + HMPREF1078_RS13645 0.51 +0.3 177,931 - HMPREF1078_RS13645 0.51 -1.4 177,937 + HMPREF1078_RS13645 0.52 -1.4 177,989 + HMPREF1078_RS13645 0.57 +0.7 177,989 + HMPREF1078_RS13645 0.57 -0.7 177,989 + HMPREF1078_RS13645 0.57 -1.0 177,990 - HMPREF1078_RS13645 0.57 -0.4 177,990 - HMPREF1078_RS13645 0.57 +0.1 177,990 - HMPREF1078_RS13645 0.57 -0.6 177,990 - HMPREF1078_RS13645 0.57 -1.2 177,990 - HMPREF1078_RS13645 0.57 -0.1 177,990 - HMPREF1078_RS13645 0.57 +0.4 177,990 - HMPREF1078_RS13645 0.57 +0.0 177,993 + HMPREF1078_RS13645 0.57 -0.2 177,993 + HMPREF1078_RS13645 0.57 +0.3 177,993 + HMPREF1078_RS13645 0.57 +0.4 177,993 + HMPREF1078_RS13645 0.57 -0.0 177,993 + HMPREF1078_RS13645 0.57 +0.8 177,993 + HMPREF1078_RS13645 0.57 -0.5 177,994 - HMPREF1078_RS13645 0.57 -0.6 177,994 - HMPREF1078_RS13645 0.57 -0.3 177,994 - HMPREF1078_RS13645 0.57 -0.6 177,994 - HMPREF1078_RS13645 0.57 -1.3 177,994 - HMPREF1078_RS13645 0.57 -0.6 177,994 - HMPREF1078_RS13645 0.57 -0.1 178,005 - HMPREF1078_RS13645 0.58 +0.3 178,005 - HMPREF1078_RS13645 0.58 +2.0 178,125 + HMPREF1078_RS13645 0.70 +0.1 178,141 + HMPREF1078_RS13645 0.71 -1.2 178,142 - HMPREF1078_RS13645 0.71 +0.1 178,142 - HMPREF1078_RS13645 0.71 -0.2 178,142 - HMPREF1078_RS13645 0.71 -0.2 178,142 - HMPREF1078_RS13645 0.71 -0.3 178,161 + HMPREF1078_RS13645 0.73 -0.8 178,187 - HMPREF1078_RS13645 0.76 -0.7 178,229 - HMPREF1078_RS13645 0.80 -0.0 178,258 - HMPREF1078_RS13645 0.82 -1.8 178,374 - +0.0 178,429 + -1.7 178,429 + -1.8 178,431 + -2.3 178,431 + +0.1 178,431 + -0.4 178,432 - -0.1 178,432 - +0.0 178,439 - -0.7 178,444 + -0.2 178,444 + -1.3 178,445 - +0.2 178,457 + +1.9 178,457 + -0.4 178,458 - -3.1 178,458 - +0.2 178,458 - -0.8 178,460 - -0.9 178,460 - -0.7 178,478 - -1.1 178,498 - -1.0 178,498 - -2.2 178,511 + -0.2 178,511 + -0.1 178,511 + -0.6 178,512 - -0.8 178,512 - -0.6 178,514 + -0.2 178,514 + -1.0 178,515 - -1.9 178,515 - -1.3 178,515 - +0.7 178,516 + +0.4 178,516 + +0.9 178,516 + -1.0 178,516 + -2.2 178,516 + +0.4 178,516 + -1.4 178,517 - +0.6 178,517 - +0.0 178,553 - +0.2 178,581 + HMPREF1078_RS13650 0.11 -0.6 178,581 + HMPREF1078_RS13650 0.11 -0.9 178,581 + HMPREF1078_RS13650 0.11 +0.3 178,582 - HMPREF1078_RS13650 0.11 -0.2 178,582 - HMPREF1078_RS13650 0.11 -0.1 178,582 - HMPREF1078_RS13650 0.11 +0.4 178,583 + HMPREF1078_RS13650 0.11 +0.2 178,583 + HMPREF1078_RS13650 0.11 -1.1 178,584 - HMPREF1078_RS13650 0.11 -2.0 178,584 - HMPREF1078_RS13650 0.11 -0.4 178,587 + HMPREF1078_RS13650 0.12 -0.6 178,588 - HMPREF1078_RS13650 0.12 -0.5 178,726 - HMPREF1078_RS13650 0.33 +0.2 178,751 + HMPREF1078_RS13650 0.37 -1.7 178,751 + HMPREF1078_RS13650 0.37 +0.3 178,751 + HMPREF1078_RS13650 0.37 -0.1 178,751 + HMPREF1078_RS13650 0.37 +1.2 178,752 - HMPREF1078_RS13650 0.37 +0.9 178,752 - HMPREF1078_RS13650 0.37 +0.4 178,752 - HMPREF1078_RS13650 0.37 +1.2 178,785 - HMPREF1078_RS13650 0.43 -1.6 178,785 - HMPREF1078_RS13650 0.43 +0.5 178,785 - HMPREF1078_RS13650 0.43 +0.4 178,785 - HMPREF1078_RS13650 0.43 +1.3 178,804 + HMPREF1078_RS13650 0.46 +0.0 178,842 + HMPREF1078_RS13650 0.51 +0.2 178,851 + HMPREF1078_RS13650 0.53 -2.3 178,852 - HMPREF1078_RS13650 0.53 +0.2 178,856 + HMPREF1078_RS13650 0.54 -1.5 178,857 - HMPREF1078_RS13650 0.54 -1.2 178,857 - HMPREF1078_RS13650 0.54 +0.1 179,035 - HMPREF1078_RS13650 0.82 -1.7 179,035 - HMPREF1078_RS13650 0.82 -1.2 179,035 - HMPREF1078_RS13650 0.82 -0.9 179,057 + HMPREF1078_RS13650 0.85 -0.9 179,103 - -1.2 179,137 - -2.0 179,137 - +0.3 179,151 + -1.2 179,152 - -1.0 179,162 + -1.7 179,163 - -0.4 179,167 - -0.5 179,173 + -1.1 179,175 + -1.1 179,183 - -0.6 179,231 + -1.9 179,276 + -0.4 179,276 + +1.2 179,277 - +0.3 179,277 - -1.5 179,277 - -0.1 179,295 + -1.5 179,328 - +0.1 179,343 - +0.4 179,358 + -0.9 179,358 + -0.0 179,384 + +0.5 179,384 + -0.9 179,384 + -0.3 179,385 - +0.5 179,389 + +1.2 179,390 - -0.7
Or see this region's nucleotide sequence