Experiment: Mucin from porcine stomach type II 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS09825 and HMPREF1078_RS09830 are separated by 45 nucleotides HMPREF1078_RS09830 and HMPREF1078_RS09835 are separated by 144 nucleotides HMPREF1078_RS09835 and HMPREF1078_RS09840 are separated by 34 nucleotides
HMPREF1078_RS09825: HMPREF1078_RS09825 - 6-bladed beta-propeller, at 562,858 to 563,913
_RS09825
HMPREF1078_RS09830: HMPREF1078_RS09830 - hypothetical protein, at 563,959 to 564,714
_RS09830
HMPREF1078_RS09835: HMPREF1078_RS09835 - YebC/PmpR family DNA-binding transcriptional regulator, at 564,859 to 565,593
_RS09835
HMPREF1078_RS09840: HMPREF1078_RS09840 - phenylalanine--tRNA ligase subunit beta, at 565,628 to 568,093
_RS09840
Position (kb) 564
565
566 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 563.888 kb on + strand at 563.889 kb on - strand at 563.893 kb on - strand at 563.893 kb on - strand at 563.894 kb on + strand at 563.940 kb on + strand at 563.942 kb on + strand at 563.942 kb on + strand at 563.944 kb on + strand at 563.945 kb on - strand at 563.945 kb on - strand at 563.945 kb on - strand at 563.945 kb on - strand at 563.946 kb on + strand at 563.947 kb on - strand at 563.947 kb on - strand at 563.954 kb on + strand at 563.954 kb on + strand at 563.955 kb on - strand at 563.983 kb on + strand at 563.983 kb on + strand at 563.984 kb on - strand at 563.984 kb on - strand at 564.013 kb on - strand at 564.034 kb on - strand at 564.034 kb on - strand at 564.077 kb on + strand, within HMPREF1078_RS09830 at 564.077 kb on + strand, within HMPREF1078_RS09830 at 564.078 kb on - strand, within HMPREF1078_RS09830 at 564.078 kb on - strand, within HMPREF1078_RS09830 at 564.078 kb on - strand, within HMPREF1078_RS09830 at 564.084 kb on + strand, within HMPREF1078_RS09830 at 564.084 kb on + strand, within HMPREF1078_RS09830 at 564.087 kb on - strand, within HMPREF1078_RS09830 at 564.179 kb on + strand, within HMPREF1078_RS09830 at 564.180 kb on - strand, within HMPREF1078_RS09830 at 564.243 kb on + strand, within HMPREF1078_RS09830 at 564.325 kb on + strand, within HMPREF1078_RS09830 at 564.344 kb on + strand, within HMPREF1078_RS09830 at 564.345 kb on - strand, within HMPREF1078_RS09830 at 564.345 kb on - strand, within HMPREF1078_RS09830 at 564.389 kb on + strand, within HMPREF1078_RS09830 at 564.390 kb on - strand, within HMPREF1078_RS09830 at 564.390 kb on - strand, within HMPREF1078_RS09830 at 564.423 kb on + strand, within HMPREF1078_RS09830 at 564.423 kb on + strand, within HMPREF1078_RS09830 at 564.424 kb on - strand, within HMPREF1078_RS09830 at 564.424 kb on - strand, within HMPREF1078_RS09830 at 564.436 kb on - strand, within HMPREF1078_RS09830 at 564.469 kb on - strand, within HMPREF1078_RS09830 at 564.487 kb on + strand, within HMPREF1078_RS09830 at 564.487 kb on + strand, within HMPREF1078_RS09830 at 564.487 kb on + strand, within HMPREF1078_RS09830 at 564.487 kb on + strand, within HMPREF1078_RS09830 at 564.535 kb on + strand, within HMPREF1078_RS09830 at 564.605 kb on - strand, within HMPREF1078_RS09830 at 564.605 kb on - strand, within HMPREF1078_RS09830 at 564.645 kb on + strand at 564.646 kb on - strand at 564.646 kb on - strand at 564.662 kb on - strand at 564.695 kb on - strand at 564.703 kb on - strand at 564.703 kb on - strand at 564.722 kb on - strand at 564.731 kb on - strand at 564.737 kb on - strand at 564.782 kb on + strand at 564.782 kb on + strand at 564.782 kb on + strand at 564.783 kb on - strand at 564.790 kb on + strand at 564.790 kb on + strand at 564.791 kb on - strand at 564.791 kb on - strand at 564.791 kb on - strand at 564.808 kb on - strand at 564.815 kb on + strand at 564.815 kb on + strand at 564.815 kb on + strand at 564.817 kb on + strand at 564.817 kb on + strand at 564.817 kb on + strand at 564.818 kb on - strand at 564.818 kb on - strand at 564.826 kb on + strand at 564.826 kb on + strand at 564.827 kb on - strand at 564.827 kb on - strand at 564.827 kb on - strand at 564.839 kb on - strand at 564.839 kb on - strand at 564.844 kb on - strand at 564.844 kb on - strand at 564.852 kb on + strand at 564.853 kb on - strand at 564.854 kb on - strand at 564.860 kb on + strand at 564.892 kb on - strand at 564.892 kb on - strand at 565.025 kb on + strand, within HMPREF1078_RS09835 at 565.124 kb on + strand, within HMPREF1078_RS09835 at 565.124 kb on + strand, within HMPREF1078_RS09835 at 565.130 kb on - strand, within HMPREF1078_RS09835 at 565.180 kb on - strand, within HMPREF1078_RS09835 at 565.194 kb on + strand, within HMPREF1078_RS09835 at 565.195 kb on - strand, within HMPREF1078_RS09835 at 565.195 kb on - strand, within HMPREF1078_RS09835 at 565.227 kb on + strand, within HMPREF1078_RS09835 at 565.260 kb on + strand, within HMPREF1078_RS09835 at 565.260 kb on + strand, within HMPREF1078_RS09835 at 565.260 kb on + strand, within HMPREF1078_RS09835 at 565.261 kb on - strand, within HMPREF1078_RS09835 at 565.264 kb on + strand, within HMPREF1078_RS09835 at 565.265 kb on - strand, within HMPREF1078_RS09835 at 565.274 kb on - strand, within HMPREF1078_RS09835 at 565.278 kb on + strand, within HMPREF1078_RS09835 at 565.278 kb on + strand, within HMPREF1078_RS09835 at 565.279 kb on - strand, within HMPREF1078_RS09835 at 565.287 kb on + strand, within HMPREF1078_RS09835 at 565.288 kb on - strand, within HMPREF1078_RS09835 at 565.288 kb on - strand, within HMPREF1078_RS09835 at 565.343 kb on + strand, within HMPREF1078_RS09835 at 565.343 kb on + strand, within HMPREF1078_RS09835 at 565.343 kb on + strand, within HMPREF1078_RS09835 at 565.356 kb on + strand, within HMPREF1078_RS09835 at 565.358 kb on + strand, within HMPREF1078_RS09835 at 565.408 kb on - strand, within HMPREF1078_RS09835 at 565.448 kb on - strand, within HMPREF1078_RS09835 at 565.521 kb on + strand at 565.521 kb on + strand at 565.522 kb on - strand at 565.522 kb on - strand at 565.529 kb on - strand at 565.539 kb on + strand at 565.539 kb on + strand at 565.540 kb on - strand at 565.606 kb on + strand at 565.606 kb on + strand at 565.606 kb on + strand at 565.606 kb on + strand at 565.607 kb on - strand at 565.607 kb on - strand at 565.613 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/mL (C) remove 563,888 + -0.1 563,889 - -0.7 563,893 - -0.7 563,893 - +0.1 563,894 + -0.5 563,940 + -0.3 563,942 + +0.0 563,942 + -0.6 563,944 + +0.2 563,945 - -0.1 563,945 - -0.5 563,945 - +0.2 563,945 - -0.3 563,946 + +1.0 563,947 - -0.7 563,947 - -0.5 563,954 + -0.6 563,954 + -0.4 563,955 - -0.1 563,983 + -0.2 563,983 + +0.9 563,984 - -1.2 563,984 - +0.8 564,013 - +0.6 564,034 - +0.5 564,034 - +0.1 564,077 + HMPREF1078_RS09830 0.16 -0.4 564,077 + HMPREF1078_RS09830 0.16 -0.6 564,078 - HMPREF1078_RS09830 0.16 +0.2 564,078 - HMPREF1078_RS09830 0.16 -1.0 564,078 - HMPREF1078_RS09830 0.16 +0.5 564,084 + HMPREF1078_RS09830 0.17 -1.4 564,084 + HMPREF1078_RS09830 0.17 +0.0 564,087 - HMPREF1078_RS09830 0.17 -0.5 564,179 + HMPREF1078_RS09830 0.29 -0.8 564,180 - HMPREF1078_RS09830 0.29 +0.3 564,243 + HMPREF1078_RS09830 0.38 -0.8 564,325 + HMPREF1078_RS09830 0.48 -2.5 564,344 + HMPREF1078_RS09830 0.51 -0.3 564,345 - HMPREF1078_RS09830 0.51 +0.4 564,345 - HMPREF1078_RS09830 0.51 -1.0 564,389 + HMPREF1078_RS09830 0.57 +0.1 564,390 - HMPREF1078_RS09830 0.57 -1.8 564,390 - HMPREF1078_RS09830 0.57 +0.3 564,423 + HMPREF1078_RS09830 0.61 +0.5 564,423 + HMPREF1078_RS09830 0.61 +0.3 564,424 - HMPREF1078_RS09830 0.62 -0.1 564,424 - HMPREF1078_RS09830 0.62 -0.5 564,436 - HMPREF1078_RS09830 0.63 -0.2 564,469 - HMPREF1078_RS09830 0.67 -0.2 564,487 + HMPREF1078_RS09830 0.70 -0.2 564,487 + HMPREF1078_RS09830 0.70 -0.6 564,487 + HMPREF1078_RS09830 0.70 +1.0 564,487 + HMPREF1078_RS09830 0.70 +0.5 564,535 + HMPREF1078_RS09830 0.76 +0.1 564,605 - HMPREF1078_RS09830 0.85 +0.2 564,605 - HMPREF1078_RS09830 0.85 +0.1 564,645 + -1.0 564,646 - +0.6 564,646 - -1.6 564,662 - -0.8 564,695 - -0.3 564,703 - -0.4 564,703 - -0.4 564,722 - -1.4 564,731 - +0.6 564,737 - -0.2 564,782 + -0.5 564,782 + +0.9 564,782 + -0.3 564,783 - +0.2 564,790 + +0.2 564,790 + +0.0 564,791 - -1.8 564,791 - -0.9 564,791 - -1.3 564,808 - -2.4 564,815 + -0.1 564,815 + -0.1 564,815 + +0.3 564,817 + -0.3 564,817 + -0.9 564,817 + -0.1 564,818 - -0.8 564,818 - +0.3 564,826 + -0.1 564,826 + +0.1 564,827 - +0.2 564,827 - -2.3 564,827 - -0.6 564,839 - -1.2 564,839 - -1.6 564,844 - +0.7 564,844 - +0.2 564,852 + -0.3 564,853 - +0.0 564,854 - +1.2 564,860 + -1.3 564,892 - -2.1 564,892 - -0.0 565,025 + HMPREF1078_RS09835 0.23 -0.5 565,124 + HMPREF1078_RS09835 0.36 +0.5 565,124 + HMPREF1078_RS09835 0.36 -2.8 565,130 - HMPREF1078_RS09835 0.37 -0.4 565,180 - HMPREF1078_RS09835 0.44 -1.8 565,194 + HMPREF1078_RS09835 0.46 +0.6 565,195 - HMPREF1078_RS09835 0.46 -1.9 565,195 - HMPREF1078_RS09835 0.46 +0.1 565,227 + HMPREF1078_RS09835 0.50 +1.8 565,260 + HMPREF1078_RS09835 0.55 -0.4 565,260 + HMPREF1078_RS09835 0.55 -2.0 565,260 + HMPREF1078_RS09835 0.55 +0.5 565,261 - HMPREF1078_RS09835 0.55 -1.8 565,264 + HMPREF1078_RS09835 0.55 -1.6 565,265 - HMPREF1078_RS09835 0.55 -1.9 565,274 - HMPREF1078_RS09835 0.56 -0.0 565,278 + HMPREF1078_RS09835 0.57 -0.6 565,278 + HMPREF1078_RS09835 0.57 -0.7 565,279 - HMPREF1078_RS09835 0.57 -1.4 565,287 + HMPREF1078_RS09835 0.58 -1.0 565,288 - HMPREF1078_RS09835 0.58 -1.5 565,288 - HMPREF1078_RS09835 0.58 -0.7 565,343 + HMPREF1078_RS09835 0.66 -0.4 565,343 + HMPREF1078_RS09835 0.66 -0.9 565,343 + HMPREF1078_RS09835 0.66 -0.6 565,356 + HMPREF1078_RS09835 0.68 -2.2 565,358 + HMPREF1078_RS09835 0.68 -1.1 565,408 - HMPREF1078_RS09835 0.75 -1.2 565,448 - HMPREF1078_RS09835 0.80 -0.3 565,521 + -0.1 565,521 + -0.8 565,522 - -0.3 565,522 - -0.8 565,529 - -1.9 565,539 + -0.5 565,539 + +0.7 565,540 - +0.1 565,606 + -2.3 565,606 + -0.5 565,606 + -2.1 565,606 + -0.1 565,607 - +1.6 565,607 - +0.6 565,613 + -1.0
Or see this region's nucleotide sequence