Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS04850

Experiment: Mucin from porcine stomach type II 2.5 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mucin from porcine stomach type II 2.5 mg/mL (C)
220,157	+		HMPREF1078_RS04840	0.90	-0.1
220,157	+		HMPREF1078_RS04840	0.90	-1.3
220,172	-				+0.2
220,228	+				+0.3
220,233	+				-0.0
220,255	+				+0.1
220,255	+				-1.2
220,255	+				+1.0
220,255	+				+1.0
220,256	-				+1.0
220,259	+				-2.0
220,259	+				-0.3
220,300	+				+0.0
220,300	+				+1.1
220,301	-				-2.4
220,301	-				-2.1
220,301	-				+0.2
220,363	+				-0.3
220,368	-				-0.8
220,368	-				-1.2
220,429	+				-0.5
220,429	+				-0.6
220,437	-				-1.2
220,488	+				+0.5
220,488	+				+0.4
220,488	+				-0.8
220,489	-				-0.5
220,489	-				-1.6
220,518	+				+1.8
220,518	+				-2.2
220,555	+				-0.0
220,555	+				+1.5
220,555	+				+0.2
220,558	-				-0.3
220,558	-				+0.2
220,629	-		HMPREF1078_RS04845	0.18	+1.2
220,629	-		HMPREF1078_RS04845	0.18	+0.1
220,656	+		HMPREF1078_RS04845	0.23	-1.5
220,656	+		HMPREF1078_RS04845	0.23	-0.8
220,687	+		HMPREF1078_RS04845	0.28	-1.7
220,688	-		HMPREF1078_RS04845	0.28	+0.2
220,697	-		HMPREF1078_RS04845	0.29	+0.3
220,723	+		HMPREF1078_RS04845	0.33	-1.3
220,946	+		HMPREF1078_RS04845	0.70	-1.5
221,045	-		HMPREF1078_RS04845	0.86	+0.0
221,054	-		HMPREF1078_RS04845	0.87	-0.3
221,104	-				-0.0
221,115	-				+0.2
221,132	-				-0.9
221,133	+				-0.0
221,133	+				-0.4
221,134	-				+0.4
221,184	+				+0.2
221,184	+				-0.4
221,184	+				-0.2
221,184	+				-0.0
221,185	-				-1.2
221,185	-				+0.7
221,185	-				-1.3
221,185	-				-1.8
221,189	-				-0.4
221,189	-				-0.8
221,189	-				-0.0
221,189	-				+0.3
221,189	-				-0.4
221,195	-				-0.7
221,195	-				+0.8
221,195	-				+0.2
221,195	-				-0.6
221,338	-		HMPREF1078_RS04850	0.31	-2.9
221,515	+		HMPREF1078_RS04850	0.58	-1.7
221,600	-		HMPREF1078_RS04850	0.71	+0.8
221,666	-		HMPREF1078_RS04850	0.82	-0.4
221,672	+		HMPREF1078_RS04850	0.82	-1.3
221,718	+		HMPREF1078_RS04850	0.90	-0.9
221,718	+		HMPREF1078_RS04850	0.90	-0.7
221,800	+				-1.2
221,800	+				-0.3
221,801	-				-0.1
221,806	-				+0.5
221,907	+				+0.6
221,909	+				+0.3
221,910	-				-0.6
221,936	+				+0.6
221,937	-				-0.6
221,937	-				+0.4
221,939	+				-0.6
221,987	+				+0.3
221,991	+				-1.4
221,992	-				+1.0
222,007	+				-0.1
222,016	-				-1.8
222,048	-				-0.1
222,053	-				-0.5
222,164	+				+0.2
222,164	+				-2.6
222,165	-				-0.7
222,185	+				+2.2
222,186	-				-0.6
222,376	+				-0.4
222,382	+				-0.8
222,406	-				-2.5
222,469	+				+0.1
222,472	+				-1.5
222,488	-				-1.5
222,505	-				-0.0
222,521	-				-1.6
222,528	+				-0.3
222,528	+				+0.2
222,606	+				-0.2
222,731	+				-0.9
222,732	-				+1.0
222,732	-				+0.5
222,734	+				-0.3
222,735	-				-0.7
222,738	-				+0.1
222,738	-				-1.0
222,741	-				-0.5