Experiment: Mucin from porcine stomach type II 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04555 and HMPREF1078_RS04560 are separated by 315 nucleotides HMPREF1078_RS04560 and HMPREF1078_RS04565 are separated by 13 nucleotides
HMPREF1078_RS04555: HMPREF1078_RS04555 - HAMP domain-containing sensor histidine kinase, at 143,627 to 145,180
_RS04555
HMPREF1078_RS04560: HMPREF1078_RS04560 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 145,496 to 146,320
_RS04560
HMPREF1078_RS04565: HMPREF1078_RS04565 - GNAT family N-acetyltransferase, at 146,334 to 147,299
_RS04565
Position (kb) 145
146
147 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 144.525 kb on - strand, within HMPREF1078_RS04555 at 144.536 kb on - strand, within HMPREF1078_RS04555 at 144.631 kb on - strand, within HMPREF1078_RS04555 at 144.635 kb on - strand, within HMPREF1078_RS04555 at 144.773 kb on - strand, within HMPREF1078_RS04555 at 144.782 kb on - strand, within HMPREF1078_RS04555 at 144.782 kb on - strand, within HMPREF1078_RS04555 at 144.787 kb on + strand, within HMPREF1078_RS04555 at 144.788 kb on - strand, within HMPREF1078_RS04555 at 144.792 kb on - strand, within HMPREF1078_RS04555 at 144.796 kb on + strand, within HMPREF1078_RS04555 at 144.797 kb on - strand, within HMPREF1078_RS04555 at 144.848 kb on - strand, within HMPREF1078_RS04555 at 144.859 kb on + strand, within HMPREF1078_RS04555 at 144.860 kb on - strand, within HMPREF1078_RS04555 at 144.860 kb on - strand, within HMPREF1078_RS04555 at 144.953 kb on + strand, within HMPREF1078_RS04555 at 144.954 kb on - strand, within HMPREF1078_RS04555 at 144.957 kb on + strand, within HMPREF1078_RS04555 at 144.957 kb on + strand, within HMPREF1078_RS04555 at 144.957 kb on + strand, within HMPREF1078_RS04555 at 144.958 kb on - strand, within HMPREF1078_RS04555 at 145.094 kb on - strand at 145.094 kb on - strand at 145.097 kb on + strand at 145.098 kb on - strand at 145.098 kb on - strand at 145.098 kb on - strand at 145.098 kb on - strand at 145.102 kb on - strand at 145.163 kb on + strand at 145.180 kb on + strand at 145.186 kb on + strand at 145.187 kb on - strand at 145.308 kb on + strand at 145.331 kb on + strand at 145.331 kb on + strand at 145.332 kb on - strand at 145.332 kb on - strand at 145.332 kb on - strand at 145.351 kb on - strand at 145.351 kb on - strand at 145.358 kb on + strand at 145.374 kb on + strand at 145.384 kb on + strand at 145.396 kb on + strand at 145.396 kb on + strand at 145.396 kb on + strand at 145.397 kb on - strand at 145.424 kb on + strand at 145.461 kb on - strand at 145.466 kb on + strand at 145.466 kb on + strand at 145.481 kb on + strand at 145.501 kb on - strand at 145.514 kb on - strand at 145.521 kb on + strand at 145.537 kb on - strand at 145.539 kb on + strand at 145.603 kb on + strand, within HMPREF1078_RS04560 at 145.603 kb on + strand, within HMPREF1078_RS04560 at 145.714 kb on - strand, within HMPREF1078_RS04560 at 145.727 kb on - strand, within HMPREF1078_RS04560 at 145.749 kb on + strand, within HMPREF1078_RS04560 at 145.749 kb on + strand, within HMPREF1078_RS04560 at 145.749 kb on + strand, within HMPREF1078_RS04560 at 145.749 kb on + strand, within HMPREF1078_RS04560 at 145.750 kb on - strand, within HMPREF1078_RS04560 at 145.750 kb on - strand, within HMPREF1078_RS04560 at 145.947 kb on - strand, within HMPREF1078_RS04560 at 145.947 kb on - strand, within HMPREF1078_RS04560 at 145.986 kb on + strand, within HMPREF1078_RS04560 at 146.013 kb on + strand, within HMPREF1078_RS04560 at 146.099 kb on - strand, within HMPREF1078_RS04560 at 146.159 kb on + strand, within HMPREF1078_RS04560 at 146.160 kb on - strand, within HMPREF1078_RS04560 at 146.210 kb on + strand, within HMPREF1078_RS04560 at 146.211 kb on - strand, within HMPREF1078_RS04560 at 146.211 kb on - strand, within HMPREF1078_RS04560 at 146.211 kb on - strand, within HMPREF1078_RS04560 at 146.304 kb on - strand at 146.333 kb on + strand at 146.333 kb on + strand at 146.334 kb on - strand at 146.334 kb on - strand at 146.431 kb on + strand, within HMPREF1078_RS04565 at 146.432 kb on - strand, within HMPREF1078_RS04565 at 146.433 kb on + strand, within HMPREF1078_RS04565 at 146.433 kb on + strand, within HMPREF1078_RS04565 at 146.433 kb on + strand, within HMPREF1078_RS04565 at 146.434 kb on - strand, within HMPREF1078_RS04565 at 146.434 kb on - strand, within HMPREF1078_RS04565 at 146.434 kb on - strand, within HMPREF1078_RS04565 at 146.434 kb on - strand, within HMPREF1078_RS04565 at 146.438 kb on + strand, within HMPREF1078_RS04565 at 146.439 kb on - strand, within HMPREF1078_RS04565 at 146.509 kb on - strand, within HMPREF1078_RS04565 at 146.548 kb on - strand, within HMPREF1078_RS04565 at 146.584 kb on + strand, within HMPREF1078_RS04565 at 146.619 kb on + strand, within HMPREF1078_RS04565 at 146.674 kb on + strand, within HMPREF1078_RS04565 at 146.674 kb on + strand, within HMPREF1078_RS04565 at 146.675 kb on - strand, within HMPREF1078_RS04565 at 146.726 kb on - strand, within HMPREF1078_RS04565 at 146.730 kb on + strand, within HMPREF1078_RS04565 at 146.730 kb on + strand, within HMPREF1078_RS04565 at 146.731 kb on - strand, within HMPREF1078_RS04565 at 146.871 kb on + strand, within HMPREF1078_RS04565 at 146.871 kb on + strand, within HMPREF1078_RS04565 at 146.892 kb on + strand, within HMPREF1078_RS04565 at 146.892 kb on + strand, within HMPREF1078_RS04565 at 146.893 kb on - strand, within HMPREF1078_RS04565 at 146.902 kb on - strand, within HMPREF1078_RS04565 at 146.902 kb on - strand, within HMPREF1078_RS04565 at 146.903 kb on + strand, within HMPREF1078_RS04565 at 147.033 kb on + strand, within HMPREF1078_RS04565 at 147.034 kb on - strand, within HMPREF1078_RS04565 at 147.054 kb on + strand, within HMPREF1078_RS04565 at 147.054 kb on + strand, within HMPREF1078_RS04565 at 147.054 kb on + strand, within HMPREF1078_RS04565 at 147.055 kb on - strand, within HMPREF1078_RS04565 at 147.117 kb on + strand, within HMPREF1078_RS04565 at 147.117 kb on + strand, within HMPREF1078_RS04565 at 147.117 kb on + strand, within HMPREF1078_RS04565 at 147.117 kb on + strand, within HMPREF1078_RS04565 at 147.117 kb on + strand, within HMPREF1078_RS04565 at 147.117 kb on + strand, within HMPREF1078_RS04565 at 147.118 kb on - strand, within HMPREF1078_RS04565 at 147.118 kb on - strand, within HMPREF1078_RS04565 at 147.119 kb on + strand, within HMPREF1078_RS04565 at 147.120 kb on - strand, within HMPREF1078_RS04565 at 147.120 kb on - strand, within HMPREF1078_RS04565 at 147.120 kb on - strand, within HMPREF1078_RS04565 at 147.145 kb on + strand, within HMPREF1078_RS04565 at 147.146 kb on - strand, within HMPREF1078_RS04565 at 147.242 kb on + strand at 147.253 kb on - strand at 147.286 kb on + strand at 147.287 kb on - strand at 147.293 kb on + strand at 147.310 kb on - strand at 147.317 kb on + strand at 147.318 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/mL (C) remove 144,525 - HMPREF1078_RS04555 0.58 +1.0 144,536 - HMPREF1078_RS04555 0.58 -1.5 144,631 - HMPREF1078_RS04555 0.65 -1.4 144,635 - HMPREF1078_RS04555 0.65 -1.3 144,773 - HMPREF1078_RS04555 0.74 -0.5 144,782 - HMPREF1078_RS04555 0.74 +0.6 144,782 - HMPREF1078_RS04555 0.74 -0.8 144,787 + HMPREF1078_RS04555 0.75 -0.3 144,788 - HMPREF1078_RS04555 0.75 -1.1 144,792 - HMPREF1078_RS04555 0.75 -1.0 144,796 + HMPREF1078_RS04555 0.75 -1.5 144,797 - HMPREF1078_RS04555 0.75 -2.4 144,848 - HMPREF1078_RS04555 0.79 -1.9 144,859 + HMPREF1078_RS04555 0.79 -0.9 144,860 - HMPREF1078_RS04555 0.79 -0.9 144,860 - HMPREF1078_RS04555 0.79 -0.4 144,953 + HMPREF1078_RS04555 0.85 +0.2 144,954 - HMPREF1078_RS04555 0.85 -2.7 144,957 + HMPREF1078_RS04555 0.86 -0.6 144,957 + HMPREF1078_RS04555 0.86 -0.6 144,957 + HMPREF1078_RS04555 0.86 +1.5 144,958 - HMPREF1078_RS04555 0.86 +0.1 145,094 - -1.4 145,094 - -2.6 145,097 + -0.5 145,098 - -1.3 145,098 - -1.1 145,098 - -1.3 145,098 - +0.7 145,102 - -0.2 145,163 + -0.3 145,180 + +1.0 145,186 + -1.4 145,187 - -1.3 145,308 + +1.0 145,331 + -0.3 145,331 + -0.5 145,332 - +0.7 145,332 - +0.5 145,332 - -1.1 145,351 - -0.3 145,351 - +1.6 145,358 + -2.1 145,374 + +0.1 145,384 + -1.3 145,396 + +0.6 145,396 + -1.0 145,396 + +0.8 145,397 - +0.8 145,424 + -0.9 145,461 - -2.2 145,466 + -0.9 145,466 + +0.5 145,481 + -0.6 145,501 - -1.0 145,514 - -2.0 145,521 + -3.2 145,537 - -0.8 145,539 + -0.7 145,603 + HMPREF1078_RS04560 0.13 -0.9 145,603 + HMPREF1078_RS04560 0.13 -1.7 145,714 - HMPREF1078_RS04560 0.26 -2.0 145,727 - HMPREF1078_RS04560 0.28 -0.9 145,749 + HMPREF1078_RS04560 0.31 +1.7 145,749 + HMPREF1078_RS04560 0.31 -0.6 145,749 + HMPREF1078_RS04560 0.31 -2.4 145,749 + HMPREF1078_RS04560 0.31 -0.3 145,750 - HMPREF1078_RS04560 0.31 -0.5 145,750 - HMPREF1078_RS04560 0.31 -1.0 145,947 - HMPREF1078_RS04560 0.55 -0.9 145,947 - HMPREF1078_RS04560 0.55 -0.2 145,986 + HMPREF1078_RS04560 0.59 -2.9 146,013 + HMPREF1078_RS04560 0.63 -2.7 146,099 - HMPREF1078_RS04560 0.73 +0.2 146,159 + HMPREF1078_RS04560 0.80 -0.9 146,160 - HMPREF1078_RS04560 0.80 -0.9 146,210 + HMPREF1078_RS04560 0.87 +2.5 146,211 - HMPREF1078_RS04560 0.87 -0.2 146,211 - HMPREF1078_RS04560 0.87 -1.0 146,211 - HMPREF1078_RS04560 0.87 +0.2 146,304 - +0.5 146,333 + -0.2 146,333 + -1.6 146,334 - +0.6 146,334 - +1.0 146,431 + HMPREF1078_RS04565 0.10 -0.7 146,432 - HMPREF1078_RS04565 0.10 +0.8 146,433 + HMPREF1078_RS04565 0.10 -0.5 146,433 + HMPREF1078_RS04565 0.10 -2.3 146,433 + HMPREF1078_RS04565 0.10 +0.7 146,434 - HMPREF1078_RS04565 0.10 -2.0 146,434 - HMPREF1078_RS04565 0.10 -0.3 146,434 - HMPREF1078_RS04565 0.10 +1.0 146,434 - HMPREF1078_RS04565 0.10 -0.9 146,438 + HMPREF1078_RS04565 0.11 -0.1 146,439 - HMPREF1078_RS04565 0.11 -0.8 146,509 - HMPREF1078_RS04565 0.18 -3.6 146,548 - HMPREF1078_RS04565 0.22 -0.7 146,584 + HMPREF1078_RS04565 0.26 +0.3 146,619 + HMPREF1078_RS04565 0.30 -0.3 146,674 + HMPREF1078_RS04565 0.35 -1.7 146,674 + HMPREF1078_RS04565 0.35 +0.1 146,675 - HMPREF1078_RS04565 0.35 +0.2 146,726 - HMPREF1078_RS04565 0.41 -0.2 146,730 + HMPREF1078_RS04565 0.41 +0.4 146,730 + HMPREF1078_RS04565 0.41 -0.8 146,731 - HMPREF1078_RS04565 0.41 -1.6 146,871 + HMPREF1078_RS04565 0.56 -1.1 146,871 + HMPREF1078_RS04565 0.56 -0.9 146,892 + HMPREF1078_RS04565 0.58 -0.7 146,892 + HMPREF1078_RS04565 0.58 +0.2 146,893 - HMPREF1078_RS04565 0.58 -3.0 146,902 - HMPREF1078_RS04565 0.59 +1.5 146,902 - HMPREF1078_RS04565 0.59 -2.0 146,903 + HMPREF1078_RS04565 0.59 +3.0 147,033 + HMPREF1078_RS04565 0.72 +0.1 147,034 - HMPREF1078_RS04565 0.72 -2.0 147,054 + HMPREF1078_RS04565 0.75 +0.5 147,054 + HMPREF1078_RS04565 0.75 +0.0 147,054 + HMPREF1078_RS04565 0.75 -1.0 147,055 - HMPREF1078_RS04565 0.75 -0.8 147,117 + HMPREF1078_RS04565 0.81 -0.3 147,117 + HMPREF1078_RS04565 0.81 -0.1 147,117 + HMPREF1078_RS04565 0.81 -2.6 147,117 + HMPREF1078_RS04565 0.81 +1.7 147,117 + HMPREF1078_RS04565 0.81 -1.1 147,117 + HMPREF1078_RS04565 0.81 +0.8 147,118 - HMPREF1078_RS04565 0.81 -0.5 147,118 - HMPREF1078_RS04565 0.81 -0.4 147,119 + HMPREF1078_RS04565 0.81 +0.1 147,120 - HMPREF1078_RS04565 0.81 -0.4 147,120 - HMPREF1078_RS04565 0.81 -0.0 147,120 - HMPREF1078_RS04565 0.81 -0.0 147,145 + HMPREF1078_RS04565 0.84 +1.4 147,146 - HMPREF1078_RS04565 0.84 -0.9 147,242 + +0.7 147,253 - -0.0 147,286 + -2.2 147,287 - -0.7 147,293 + -0.4 147,310 - +0.6 147,317 + -0.4 147,318 - -0.2
Or see this region's nucleotide sequence