Experiment: Mucin from porcine stomach type II 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04475 and HMPREF1078_RS04480 are separated by 15 nucleotides HMPREF1078_RS04480 and HMPREF1078_RS04485 are separated by 7 nucleotides HMPREF1078_RS04485 and HMPREF1078_RS04490 are separated by 126 nucleotides HMPREF1078_RS04490 and HMPREF1078_RS04495 are separated by 283 nucleotides
HMPREF1078_RS04475: HMPREF1078_RS04475 - glucosaminidase domain-containing protein, at 129,215 to 129,715
_RS04475
HMPREF1078_RS04480: HMPREF1078_RS04480 - hypothetical protein, at 129,731 to 130,078
_RS04480
HMPREF1078_RS04485: HMPREF1078_RS04485 - T9SS type A sorting domain-containing protein, at 130,086 to 130,415
_RS04485
HMPREF1078_RS04490: HMPREF1078_RS04490 - ribonuclease Z, at 130,542 to 131,456
_RS04490
HMPREF1078_RS04495: HMPREF1078_RS04495 - cytochrome d ubiquinol oxidase subunit II, at 131,740 to 132,894
_RS04495
Position (kb) 130
131
132 Strain fitness (log2 ratio) -2
-1
0
1
2 at 129.581 kb on + strand, within HMPREF1078_RS04475 at 129.584 kb on - strand, within HMPREF1078_RS04475 at 129.584 kb on - strand, within HMPREF1078_RS04475 at 129.699 kb on + strand at 129.962 kb on + strand, within HMPREF1078_RS04480 at 129.962 kb on + strand, within HMPREF1078_RS04480 at 129.962 kb on + strand, within HMPREF1078_RS04480 at 129.962 kb on + strand, within HMPREF1078_RS04480 at 129.963 kb on - strand, within HMPREF1078_RS04480 at 129.963 kb on - strand, within HMPREF1078_RS04480 at 129.963 kb on - strand, within HMPREF1078_RS04480 at 129.964 kb on + strand, within HMPREF1078_RS04480 at 129.965 kb on - strand, within HMPREF1078_RS04480 at 129.965 kb on - strand, within HMPREF1078_RS04480 at 130.046 kb on + strand at 130.132 kb on + strand, within HMPREF1078_RS04485 at 130.132 kb on + strand, within HMPREF1078_RS04485 at 130.133 kb on - strand, within HMPREF1078_RS04485 at 130.133 kb on - strand, within HMPREF1078_RS04485 at 130.133 kb on - strand, within HMPREF1078_RS04485 at 130.133 kb on - strand, within HMPREF1078_RS04485 at 130.133 kb on - strand, within HMPREF1078_RS04485 at 130.135 kb on + strand, within HMPREF1078_RS04485 at 130.135 kb on + strand, within HMPREF1078_RS04485 at 130.157 kb on + strand, within HMPREF1078_RS04485 at 130.157 kb on + strand, within HMPREF1078_RS04485 at 130.157 kb on + strand, within HMPREF1078_RS04485 at 130.158 kb on - strand, within HMPREF1078_RS04485 at 130.158 kb on - strand, within HMPREF1078_RS04485 at 130.158 kb on - strand, within HMPREF1078_RS04485 at 130.206 kb on + strand, within HMPREF1078_RS04485 at 130.206 kb on + strand, within HMPREF1078_RS04485 at 130.270 kb on + strand, within HMPREF1078_RS04485 at 130.271 kb on - strand, within HMPREF1078_RS04485 at 130.401 kb on - strand at 130.415 kb on + strand at 130.416 kb on - strand at 130.418 kb on - strand at 130.418 kb on - strand at 130.436 kb on - strand at 130.464 kb on + strand at 130.478 kb on + strand at 130.631 kb on - strand at 130.810 kb on + strand, within HMPREF1078_RS04490 at 130.811 kb on - strand, within HMPREF1078_RS04490 at 130.811 kb on - strand, within HMPREF1078_RS04490 at 130.904 kb on - strand, within HMPREF1078_RS04490 at 130.904 kb on - strand, within HMPREF1078_RS04490 at 130.922 kb on + strand, within HMPREF1078_RS04490 at 130.922 kb on + strand, within HMPREF1078_RS04490 at 130.923 kb on - strand, within HMPREF1078_RS04490 at 130.977 kb on - strand, within HMPREF1078_RS04490 at 131.009 kb on - strand, within HMPREF1078_RS04490 at 131.282 kb on + strand, within HMPREF1078_RS04490 at 131.355 kb on - strand, within HMPREF1078_RS04490 at 131.356 kb on + strand, within HMPREF1078_RS04490 at 131.433 kb on + strand at 131.433 kb on + strand at 131.434 kb on - strand at 131.440 kb on - strand at 131.440 kb on - strand at 131.440 kb on - strand at 131.481 kb on + strand at 131.482 kb on - strand at 131.490 kb on + strand at 131.558 kb on - strand at 131.558 kb on - strand at 131.565 kb on - strand at 131.567 kb on - strand at 131.583 kb on + strand at 131.592 kb on + strand at 131.606 kb on - strand at 131.632 kb on - strand at 131.632 kb on - strand at 131.632 kb on - strand at 131.638 kb on + strand at 131.660 kb on + strand at 131.675 kb on + strand at 131.744 kb on + strand at 131.821 kb on - strand at 131.855 kb on + strand at 131.856 kb on - strand, within HMPREF1078_RS04495 at 131.856 kb on - strand, within HMPREF1078_RS04495 at 131.856 kb on - strand, within HMPREF1078_RS04495 at 131.856 kb on - strand, within HMPREF1078_RS04495 at 131.932 kb on - strand, within HMPREF1078_RS04495 at 131.939 kb on + strand, within HMPREF1078_RS04495 at 131.939 kb on + strand, within HMPREF1078_RS04495 at 131.940 kb on - strand, within HMPREF1078_RS04495 at 131.946 kb on + strand, within HMPREF1078_RS04495 at 132.030 kb on + strand, within HMPREF1078_RS04495 at 132.060 kb on - strand, within HMPREF1078_RS04495 at 132.124 kb on - strand, within HMPREF1078_RS04495 at 132.128 kb on + strand, within HMPREF1078_RS04495 at 132.133 kb on - strand, within HMPREF1078_RS04495 at 132.144 kb on + strand, within HMPREF1078_RS04495 at 132.144 kb on + strand, within HMPREF1078_RS04495 at 132.145 kb on - strand, within HMPREF1078_RS04495 at 132.146 kb on + strand, within HMPREF1078_RS04495 at 132.147 kb on - strand, within HMPREF1078_RS04495 at 132.147 kb on - strand, within HMPREF1078_RS04495 at 132.147 kb on - strand, within HMPREF1078_RS04495 at 132.353 kb on - strand, within HMPREF1078_RS04495 at 132.353 kb on - strand, within HMPREF1078_RS04495
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/mL (C) remove 129,581 + HMPREF1078_RS04475 0.73 -1.2 129,584 - HMPREF1078_RS04475 0.74 -0.6 129,584 - HMPREF1078_RS04475 0.74 -0.2 129,699 + -0.5 129,962 + HMPREF1078_RS04480 0.66 +0.3 129,962 + HMPREF1078_RS04480 0.66 +1.2 129,962 + HMPREF1078_RS04480 0.66 +1.3 129,962 + HMPREF1078_RS04480 0.66 -0.4 129,963 - HMPREF1078_RS04480 0.67 -0.1 129,963 - HMPREF1078_RS04480 0.67 -0.9 129,963 - HMPREF1078_RS04480 0.67 -1.3 129,964 + HMPREF1078_RS04480 0.67 -0.5 129,965 - HMPREF1078_RS04480 0.67 +0.1 129,965 - HMPREF1078_RS04480 0.67 -0.0 130,046 + -0.1 130,132 + HMPREF1078_RS04485 0.14 +0.4 130,132 + HMPREF1078_RS04485 0.14 +0.8 130,133 - HMPREF1078_RS04485 0.14 -0.8 130,133 - HMPREF1078_RS04485 0.14 +0.5 130,133 - HMPREF1078_RS04485 0.14 +0.6 130,133 - HMPREF1078_RS04485 0.14 -0.3 130,133 - HMPREF1078_RS04485 0.14 -0.2 130,135 + HMPREF1078_RS04485 0.15 -0.7 130,135 + HMPREF1078_RS04485 0.15 +0.5 130,157 + HMPREF1078_RS04485 0.22 +0.9 130,157 + HMPREF1078_RS04485 0.22 -0.0 130,157 + HMPREF1078_RS04485 0.22 +0.2 130,158 - HMPREF1078_RS04485 0.22 -1.9 130,158 - HMPREF1078_RS04485 0.22 +0.3 130,158 - HMPREF1078_RS04485 0.22 -1.0 130,206 + HMPREF1078_RS04485 0.36 +0.0 130,206 + HMPREF1078_RS04485 0.36 -1.1 130,270 + HMPREF1078_RS04485 0.56 -0.6 130,271 - HMPREF1078_RS04485 0.56 -0.8 130,401 - -0.2 130,415 + -1.0 130,416 - -0.4 130,418 - -0.0 130,418 - -0.5 130,436 - +2.2 130,464 + -0.5 130,478 + -0.6 130,631 - -1.1 130,810 + HMPREF1078_RS04490 0.29 -0.2 130,811 - HMPREF1078_RS04490 0.29 -0.3 130,811 - HMPREF1078_RS04490 0.29 -0.1 130,904 - HMPREF1078_RS04490 0.40 +0.4 130,904 - HMPREF1078_RS04490 0.40 -0.8 130,922 + HMPREF1078_RS04490 0.42 +0.2 130,922 + HMPREF1078_RS04490 0.42 -0.6 130,923 - HMPREF1078_RS04490 0.42 -1.6 130,977 - HMPREF1078_RS04490 0.48 -1.3 131,009 - HMPREF1078_RS04490 0.51 +0.7 131,282 + HMPREF1078_RS04490 0.81 -0.8 131,355 - HMPREF1078_RS04490 0.89 -1.3 131,356 + HMPREF1078_RS04490 0.89 +0.1 131,433 + +0.2 131,433 + -0.8 131,434 - -0.6 131,440 - +0.4 131,440 - +0.2 131,440 - +0.5 131,481 + +1.0 131,482 - -1.2 131,490 + -1.5 131,558 - -0.4 131,558 - -0.2 131,565 - +1.0 131,567 - +0.6 131,583 + +0.4 131,592 + +0.6 131,606 - -0.0 131,632 - +0.0 131,632 - -0.5 131,632 - +1.5 131,638 + -0.1 131,660 + -0.8 131,675 + -0.0 131,744 + -0.7 131,821 - +0.6 131,855 + -0.6 131,856 - HMPREF1078_RS04495 0.10 -0.4 131,856 - HMPREF1078_RS04495 0.10 -0.8 131,856 - HMPREF1078_RS04495 0.10 +0.1 131,856 - HMPREF1078_RS04495 0.10 -0.5 131,932 - HMPREF1078_RS04495 0.17 +0.2 131,939 + HMPREF1078_RS04495 0.17 -0.2 131,939 + HMPREF1078_RS04495 0.17 +0.2 131,940 - HMPREF1078_RS04495 0.17 +0.1 131,946 + HMPREF1078_RS04495 0.18 +0.7 132,030 + HMPREF1078_RS04495 0.25 -1.0 132,060 - HMPREF1078_RS04495 0.28 +1.0 132,124 - HMPREF1078_RS04495 0.33 -0.2 132,128 + HMPREF1078_RS04495 0.34 +0.2 132,133 - HMPREF1078_RS04495 0.34 +1.1 132,144 + HMPREF1078_RS04495 0.35 +0.5 132,144 + HMPREF1078_RS04495 0.35 -0.6 132,145 - HMPREF1078_RS04495 0.35 -1.0 132,146 + HMPREF1078_RS04495 0.35 +0.7 132,147 - HMPREF1078_RS04495 0.35 -1.2 132,147 - HMPREF1078_RS04495 0.35 -0.5 132,147 - HMPREF1078_RS04495 0.35 +0.4 132,353 - HMPREF1078_RS04495 0.53 -1.5 132,353 - HMPREF1078_RS04495 0.53 -1.1
Or see this region's nucleotide sequence