Experiment: pectate 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS11920 and HMPREF1078_RS11925 are separated by 181 nucleotides HMPREF1078_RS11925 and HMPREF1078_RS11930 are separated by 159 nucleotides HMPREF1078_RS11930 and HMPREF1078_RS11935 are separated by 9 nucleotides
HMPREF1078_RS11920: HMPREF1078_RS11920 - GH92 family glycosyl hydrolase, at 340,600 to 342,885
_RS11920
HMPREF1078_RS11925: HMPREF1078_RS11925 - RNA polymerase sigma-70 factor, at 343,067 to 343,633
_RS11925
HMPREF1078_RS11930: HMPREF1078_RS11930 - VOC family protein, at 343,793 to 344,173
_RS11930
HMPREF1078_RS11935: HMPREF1078_RS11935 - Fe-S cluster assembly protein SufD, at 344,183 to 345,526
_RS11935
Position (kb) 343
344
345 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 342.881 kb on + strand at 342.914 kb on + strand at 342.915 kb on - strand at 342.967 kb on + strand at 342.968 kb on - strand at 342.968 kb on - strand at 342.997 kb on + strand at 342.998 kb on - strand at 343.002 kb on + strand at 343.002 kb on + strand at 343.002 kb on + strand at 343.006 kb on + strand at 343.012 kb on - strand at 343.018 kb on - strand at 343.042 kb on - strand at 343.059 kb on + strand at 343.064 kb on + strand at 343.064 kb on + strand at 343.065 kb on - strand at 343.065 kb on - strand at 343.066 kb on + strand at 343.086 kb on + strand at 343.144 kb on + strand, within HMPREF1078_RS11925 at 343.145 kb on - strand, within HMPREF1078_RS11925 at 343.145 kb on - strand, within HMPREF1078_RS11925 at 343.146 kb on + strand, within HMPREF1078_RS11925 at 343.146 kb on + strand, within HMPREF1078_RS11925 at 343.146 kb on + strand, within HMPREF1078_RS11925 at 343.146 kb on + strand, within HMPREF1078_RS11925 at 343.146 kb on + strand, within HMPREF1078_RS11925 at 343.146 kb on + strand, within HMPREF1078_RS11925 at 343.146 kb on + strand, within HMPREF1078_RS11925 at 343.146 kb on + strand, within HMPREF1078_RS11925 at 343.146 kb on + strand, within HMPREF1078_RS11925 at 343.146 kb on + strand, within HMPREF1078_RS11925 at 343.147 kb on - strand, within HMPREF1078_RS11925 at 343.147 kb on - strand, within HMPREF1078_RS11925 at 343.147 kb on - strand, within HMPREF1078_RS11925 at 343.147 kb on - strand, within HMPREF1078_RS11925 at 343.147 kb on - strand, within HMPREF1078_RS11925 at 343.148 kb on + strand, within HMPREF1078_RS11925 at 343.149 kb on - strand, within HMPREF1078_RS11925 at 343.149 kb on - strand, within HMPREF1078_RS11925 at 343.149 kb on - strand, within HMPREF1078_RS11925 at 343.161 kb on + strand, within HMPREF1078_RS11925 at 343.161 kb on + strand, within HMPREF1078_RS11925 at 343.161 kb on + strand, within HMPREF1078_RS11925 at 343.161 kb on + strand, within HMPREF1078_RS11925 at 343.161 kb on + strand, within HMPREF1078_RS11925 at 343.185 kb on + strand, within HMPREF1078_RS11925 at 343.185 kb on + strand, within HMPREF1078_RS11925 at 343.185 kb on + strand, within HMPREF1078_RS11925 at 343.186 kb on - strand, within HMPREF1078_RS11925 at 343.186 kb on - strand, within HMPREF1078_RS11925 at 343.250 kb on + strand, within HMPREF1078_RS11925 at 343.251 kb on - strand, within HMPREF1078_RS11925 at 343.252 kb on + strand, within HMPREF1078_RS11925 at 343.253 kb on - strand, within HMPREF1078_RS11925 at 343.255 kb on - strand, within HMPREF1078_RS11925 at 343.255 kb on - strand, within HMPREF1078_RS11925 at 343.255 kb on - strand, within HMPREF1078_RS11925 at 343.255 kb on - strand, within HMPREF1078_RS11925 at 343.279 kb on + strand, within HMPREF1078_RS11925 at 343.280 kb on - strand, within HMPREF1078_RS11925 at 343.297 kb on + strand, within HMPREF1078_RS11925 at 343.297 kb on + strand, within HMPREF1078_RS11925 at 343.297 kb on + strand, within HMPREF1078_RS11925 at 343.297 kb on + strand, within HMPREF1078_RS11925 at 343.298 kb on - strand, within HMPREF1078_RS11925 at 343.298 kb on - strand, within HMPREF1078_RS11925 at 343.298 kb on - strand, within HMPREF1078_RS11925 at 343.298 kb on - strand, within HMPREF1078_RS11925 at 343.299 kb on + strand, within HMPREF1078_RS11925 at 343.299 kb on + strand, within HMPREF1078_RS11925 at 343.300 kb on - strand, within HMPREF1078_RS11925 at 343.403 kb on - strand, within HMPREF1078_RS11925 at 343.425 kb on + strand, within HMPREF1078_RS11925 at 343.465 kb on + strand, within HMPREF1078_RS11925 at 343.499 kb on + strand, within HMPREF1078_RS11925 at 343.547 kb on + strand, within HMPREF1078_RS11925 at 343.547 kb on + strand, within HMPREF1078_RS11925 at 343.552 kb on + strand, within HMPREF1078_RS11925 at 343.552 kb on + strand, within HMPREF1078_RS11925 at 343.552 kb on + strand, within HMPREF1078_RS11925 at 343.552 kb on + strand, within HMPREF1078_RS11925 at 343.553 kb on - strand, within HMPREF1078_RS11925 at 343.553 kb on - strand, within HMPREF1078_RS11925 at 343.555 kb on - strand, within HMPREF1078_RS11925 at 343.596 kb on - strand at 343.596 kb on - strand at 343.599 kb on + strand at 343.599 kb on + strand at 343.599 kb on + strand at 343.600 kb on - strand at 343.600 kb on - strand at 343.600 kb on - strand at 343.611 kb on + strand at 343.611 kb on + strand at 343.622 kb on + strand at 343.622 kb on + strand at 343.622 kb on + strand at 343.623 kb on - strand at 343.712 kb on - strand at 343.717 kb on - strand at 343.733 kb on + strand at 343.734 kb on - strand at 343.734 kb on - strand at 343.752 kb on - strand at 343.771 kb on + strand at 343.845 kb on + strand, within HMPREF1078_RS11930 at 343.846 kb on - strand, within HMPREF1078_RS11930 at 343.846 kb on - strand, within HMPREF1078_RS11930 at 343.849 kb on - strand, within HMPREF1078_RS11930 at 343.849 kb on - strand, within HMPREF1078_RS11930 at 343.864 kb on + strand, within HMPREF1078_RS11930 at 343.994 kb on - strand, within HMPREF1078_RS11930 at 343.994 kb on - strand, within HMPREF1078_RS11930 at 344.079 kb on + strand, within HMPREF1078_RS11930 at 344.115 kb on + strand, within HMPREF1078_RS11930 at 344.159 kb on - strand at 344.159 kb on - strand at 344.173 kb on + strand at 344.173 kb on + strand at 344.173 kb on + strand at 344.174 kb on - strand at 344.174 kb on - strand at 344.178 kb on + strand at 344.178 kb on + strand at 344.179 kb on - strand at 344.244 kb on - strand at 344.244 kb on - strand at 344.249 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/mL (C) remove 342,881 + +0.7 342,914 + +1.0 342,915 - -0.1 342,967 + +0.7 342,968 - +0.2 342,968 - -0.9 342,997 + -1.6 342,998 - +0.6 343,002 + +1.2 343,002 + +0.0 343,002 + +0.2 343,006 + +0.3 343,012 - -0.2 343,018 - +0.6 343,042 - -1.8 343,059 + +0.8 343,064 + +0.6 343,064 + +0.6 343,065 - -1.2 343,065 - -0.3 343,066 + -0.9 343,086 + +1.0 343,144 + HMPREF1078_RS11925 0.14 +0.5 343,145 - HMPREF1078_RS11925 0.14 +0.3 343,145 - HMPREF1078_RS11925 0.14 -2.3 343,146 + HMPREF1078_RS11925 0.14 +0.9 343,146 + HMPREF1078_RS11925 0.14 +0.7 343,146 + HMPREF1078_RS11925 0.14 +0.3 343,146 + HMPREF1078_RS11925 0.14 -0.2 343,146 + HMPREF1078_RS11925 0.14 +0.3 343,146 + HMPREF1078_RS11925 0.14 -0.4 343,146 + HMPREF1078_RS11925 0.14 +0.6 343,146 + HMPREF1078_RS11925 0.14 -0.0 343,146 + HMPREF1078_RS11925 0.14 -2.2 343,146 + HMPREF1078_RS11925 0.14 -0.5 343,147 - HMPREF1078_RS11925 0.14 -0.2 343,147 - HMPREF1078_RS11925 0.14 +1.3 343,147 - HMPREF1078_RS11925 0.14 -0.1 343,147 - HMPREF1078_RS11925 0.14 -1.9 343,147 - HMPREF1078_RS11925 0.14 -2.3 343,148 + HMPREF1078_RS11925 0.14 +0.2 343,149 - HMPREF1078_RS11925 0.14 -0.0 343,149 - HMPREF1078_RS11925 0.14 -0.1 343,149 - HMPREF1078_RS11925 0.14 +0.3 343,161 + HMPREF1078_RS11925 0.17 -3.7 343,161 + HMPREF1078_RS11925 0.17 +0.5 343,161 + HMPREF1078_RS11925 0.17 -2.4 343,161 + HMPREF1078_RS11925 0.17 +1.9 343,161 + HMPREF1078_RS11925 0.17 -2.1 343,185 + HMPREF1078_RS11925 0.21 +0.3 343,185 + HMPREF1078_RS11925 0.21 +1.0 343,185 + HMPREF1078_RS11925 0.21 -0.7 343,186 - HMPREF1078_RS11925 0.21 -0.9 343,186 - HMPREF1078_RS11925 0.21 -0.2 343,250 + HMPREF1078_RS11925 0.32 -1.1 343,251 - HMPREF1078_RS11925 0.32 -0.3 343,252 + HMPREF1078_RS11925 0.33 +0.4 343,253 - HMPREF1078_RS11925 0.33 -0.1 343,255 - HMPREF1078_RS11925 0.33 -1.0 343,255 - HMPREF1078_RS11925 0.33 +0.6 343,255 - HMPREF1078_RS11925 0.33 -0.4 343,255 - HMPREF1078_RS11925 0.33 -0.4 343,279 + HMPREF1078_RS11925 0.37 -0.3 343,280 - HMPREF1078_RS11925 0.38 +0.6 343,297 + HMPREF1078_RS11925 0.41 -1.1 343,297 + HMPREF1078_RS11925 0.41 +0.1 343,297 + HMPREF1078_RS11925 0.41 +0.8 343,297 + HMPREF1078_RS11925 0.41 +0.0 343,298 - HMPREF1078_RS11925 0.41 +0.1 343,298 - HMPREF1078_RS11925 0.41 +0.2 343,298 - HMPREF1078_RS11925 0.41 +0.1 343,298 - HMPREF1078_RS11925 0.41 -0.4 343,299 + HMPREF1078_RS11925 0.41 -0.8 343,299 + HMPREF1078_RS11925 0.41 -0.7 343,300 - HMPREF1078_RS11925 0.41 +1.4 343,403 - HMPREF1078_RS11925 0.59 +0.2 343,425 + HMPREF1078_RS11925 0.63 -0.3 343,465 + HMPREF1078_RS11925 0.70 +1.4 343,499 + HMPREF1078_RS11925 0.76 +0.6 343,547 + HMPREF1078_RS11925 0.85 -0.2 343,547 + HMPREF1078_RS11925 0.85 +0.1 343,552 + HMPREF1078_RS11925 0.86 -1.0 343,552 + HMPREF1078_RS11925 0.86 -0.3 343,552 + HMPREF1078_RS11925 0.86 +0.7 343,552 + HMPREF1078_RS11925 0.86 +0.3 343,553 - HMPREF1078_RS11925 0.86 -0.4 343,553 - HMPREF1078_RS11925 0.86 -0.1 343,555 - HMPREF1078_RS11925 0.86 +0.6 343,596 - -1.2 343,596 - -0.8 343,599 + +0.1 343,599 + -0.0 343,599 + +0.2 343,600 - -0.1 343,600 - -1.7 343,600 - -1.1 343,611 + -0.0 343,611 + -0.8 343,622 + +0.3 343,622 + +0.4 343,622 + -0.1 343,623 - -0.4 343,712 - -2.2 343,717 - -0.0 343,733 + -0.5 343,734 - -1.2 343,734 - +0.0 343,752 - -0.3 343,771 + -0.6 343,845 + HMPREF1078_RS11930 0.14 -1.2 343,846 - HMPREF1078_RS11930 0.14 +0.1 343,846 - HMPREF1078_RS11930 0.14 -0.7 343,849 - HMPREF1078_RS11930 0.15 -0.3 343,849 - HMPREF1078_RS11930 0.15 -2.3 343,864 + HMPREF1078_RS11930 0.19 +0.6 343,994 - HMPREF1078_RS11930 0.53 -1.3 343,994 - HMPREF1078_RS11930 0.53 -0.7 344,079 + HMPREF1078_RS11930 0.75 -0.9 344,115 + HMPREF1078_RS11930 0.85 +1.3 344,159 - +0.3 344,159 - +0.6 344,173 + -0.3 344,173 + -1.5 344,173 + -0.8 344,174 - +0.4 344,174 - -0.3 344,178 + -0.8 344,178 + -0.1 344,179 - -1.5 344,244 - -1.8 344,244 - +0.4 344,249 - -1.7
Or see this region's nucleotide sequence