Experiment: pectate 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04460 and HMPREF1078_RS04465 are separated by 309 nucleotides HMPREF1078_RS04465 and HMPREF1078_RS04470 are separated by 81 nucleotides HMPREF1078_RS04470 and HMPREF1078_RS04475 are separated by 73 nucleotides HMPREF1078_RS04475 and HMPREF1078_RS04480 are separated by 15 nucleotides HMPREF1078_RS04480 and HMPREF1078_RS04485 are separated by 7 nucleotides
HMPREF1078_RS04460: HMPREF1078_RS04460 - DUF3987 domain-containing protein, at 125,812 to 128,079
_RS04460
HMPREF1078_RS04465: HMPREF1078_RS04465 - HU family DNA-binding protein, at 128,389 to 128,835
_RS04465
HMPREF1078_RS04470: HMPREF1078_RS04470 - DUF4248 domain-containing protein, at 128,917 to 129,141
_RS04470
HMPREF1078_RS04475: HMPREF1078_RS04475 - glucosaminidase domain-containing protein, at 129,215 to 129,715
_RS04475
HMPREF1078_RS04480: HMPREF1078_RS04480 - hypothetical protein, at 129,731 to 130,078
_RS04480
HMPREF1078_RS04485: HMPREF1078_RS04485 - T9SS type A sorting domain-containing protein, at 130,086 to 130,415
_RS04485
Position (kb) 128
129
130 Strain fitness (log2 ratio) -2
-1
0
1
2 at 127.942 kb on + strand at 127.996 kb on + strand at 127.999 kb on - strand at 128.027 kb on + strand at 128.145 kb on + strand at 128.146 kb on - strand at 128.146 kb on - strand at 128.187 kb on + strand at 128.210 kb on - strand at 128.238 kb on + strand at 128.239 kb on - strand at 128.336 kb on + strand at 128.345 kb on + strand at 128.370 kb on - strand at 128.388 kb on + strand at 128.401 kb on + strand at 128.461 kb on + strand, within HMPREF1078_RS04465 at 128.756 kb on - strand, within HMPREF1078_RS04465 at 128.869 kb on - strand at 128.946 kb on - strand, within HMPREF1078_RS04470 at 128.970 kb on - strand, within HMPREF1078_RS04470 at 128.970 kb on - strand, within HMPREF1078_RS04470 at 129.073 kb on - strand, within HMPREF1078_RS04470 at 129.112 kb on + strand, within HMPREF1078_RS04470 at 129.113 kb on - strand, within HMPREF1078_RS04470 at 129.181 kb on - strand at 129.211 kb on + strand at 129.211 kb on + strand at 129.211 kb on + strand at 129.212 kb on - strand at 129.213 kb on + strand at 129.213 kb on + strand at 129.238 kb on - strand at 129.242 kb on - strand at 129.242 kb on - strand at 129.242 kb on - strand at 129.383 kb on + strand, within HMPREF1078_RS04475 at 129.462 kb on - strand, within HMPREF1078_RS04475 at 129.581 kb on + strand, within HMPREF1078_RS04475 at 129.584 kb on - strand, within HMPREF1078_RS04475 at 129.584 kb on - strand, within HMPREF1078_RS04475 at 129.699 kb on + strand at 129.962 kb on + strand, within HMPREF1078_RS04480 at 129.962 kb on + strand, within HMPREF1078_RS04480 at 129.962 kb on + strand, within HMPREF1078_RS04480 at 129.962 kb on + strand, within HMPREF1078_RS04480 at 129.963 kb on - strand, within HMPREF1078_RS04480 at 129.963 kb on - strand, within HMPREF1078_RS04480 at 129.963 kb on - strand, within HMPREF1078_RS04480 at 129.964 kb on + strand, within HMPREF1078_RS04480 at 129.965 kb on - strand, within HMPREF1078_RS04480 at 129.965 kb on - strand, within HMPREF1078_RS04480 at 130.046 kb on + strand at 130.132 kb on + strand, within HMPREF1078_RS04485 at 130.132 kb on + strand, within HMPREF1078_RS04485 at 130.133 kb on - strand, within HMPREF1078_RS04485 at 130.133 kb on - strand, within HMPREF1078_RS04485 at 130.133 kb on - strand, within HMPREF1078_RS04485 at 130.133 kb on - strand, within HMPREF1078_RS04485 at 130.133 kb on - strand, within HMPREF1078_RS04485 at 130.135 kb on + strand, within HMPREF1078_RS04485 at 130.135 kb on + strand, within HMPREF1078_RS04485
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/mL (C) remove 127,942 + +1.0 127,996 + -0.6 127,999 - -2.2 128,027 + -0.9 128,145 + -0.0 128,146 - +0.7 128,146 - -1.9 128,187 + -1.1 128,210 - +0.9 128,238 + +0.5 128,239 - -2.2 128,336 + -1.5 128,345 + +0.8 128,370 - -0.9 128,388 + -0.3 128,401 + -1.5 128,461 + HMPREF1078_RS04465 0.16 -1.8 128,756 - HMPREF1078_RS04465 0.82 -0.0 128,869 - -0.4 128,946 - HMPREF1078_RS04470 0.13 -0.2 128,970 - HMPREF1078_RS04470 0.24 -1.0 128,970 - HMPREF1078_RS04470 0.24 -0.0 129,073 - HMPREF1078_RS04470 0.69 -0.4 129,112 + HMPREF1078_RS04470 0.87 -1.3 129,113 - HMPREF1078_RS04470 0.87 -0.3 129,181 - -0.3 129,211 + +0.3 129,211 + -1.4 129,211 + -0.1 129,212 - +0.2 129,213 + +0.3 129,213 + -0.9 129,238 - +0.8 129,242 - +0.6 129,242 - -0.8 129,242 - -0.3 129,383 + HMPREF1078_RS04475 0.34 +0.7 129,462 - HMPREF1078_RS04475 0.49 -0.0 129,581 + HMPREF1078_RS04475 0.73 +0.8 129,584 - HMPREF1078_RS04475 0.74 -1.6 129,584 - HMPREF1078_RS04475 0.74 -1.9 129,699 + +0.4 129,962 + HMPREF1078_RS04480 0.66 +0.6 129,962 + HMPREF1078_RS04480 0.66 +2.6 129,962 + HMPREF1078_RS04480 0.66 +2.6 129,962 + HMPREF1078_RS04480 0.66 +0.2 129,963 - HMPREF1078_RS04480 0.67 +0.2 129,963 - HMPREF1078_RS04480 0.67 -1.0 129,963 - HMPREF1078_RS04480 0.67 -0.4 129,964 + HMPREF1078_RS04480 0.67 +0.5 129,965 - HMPREF1078_RS04480 0.67 -0.0 129,965 - HMPREF1078_RS04480 0.67 -0.6 130,046 + -0.6 130,132 + HMPREF1078_RS04485 0.14 -1.0 130,132 + HMPREF1078_RS04485 0.14 +0.4 130,133 - HMPREF1078_RS04485 0.14 -0.2 130,133 - HMPREF1078_RS04485 0.14 +0.4 130,133 - HMPREF1078_RS04485 0.14 +0.4 130,133 - HMPREF1078_RS04485 0.14 +0.9 130,133 - HMPREF1078_RS04485 0.14 +0.2 130,135 + HMPREF1078_RS04485 0.15 -0.4 130,135 + HMPREF1078_RS04485 0.15 -1.9
Or see this region's nucleotide sequence