Experiment: pectate 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01735 and HMPREF1078_RS01740 overlap by 4 nucleotides HMPREF1078_RS01740 and HMPREF1078_RS01745 are separated by 126 nucleotides HMPREF1078_RS01745 and HMPREF1078_RS01750 are separated by 18 nucleotides
HMPREF1078_RS01735: HMPREF1078_RS01735 - 4-hydroxy-tetrahydrodipicolinate synthase, at 434,846 to 435,739
_RS01735
HMPREF1078_RS01740: HMPREF1078_RS01740 - TlpA disulfide reductase family protein, at 435,736 to 436,287
_RS01740
HMPREF1078_RS01745: HMPREF1078_RS01745 - GtrA family protein, at 436,414 to 436,779
_RS01745
HMPREF1078_RS01750: HMPREF1078_RS01750 - AraC family transcriptional regulator, at 436,798 to 437,685
_RS01750
Position (kb) 436
437 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 435.711 kb on + strand at 435.711 kb on + strand at 435.714 kb on + strand at 435.714 kb on + strand at 435.714 kb on + strand at 435.714 kb on + strand at 435.714 kb on + strand at 435.738 kb on - strand at 435.799 kb on + strand, within HMPREF1078_RS01740 at 435.800 kb on - strand, within HMPREF1078_RS01740 at 435.800 kb on - strand, within HMPREF1078_RS01740 at 435.828 kb on + strand, within HMPREF1078_RS01740 at 435.828 kb on + strand, within HMPREF1078_RS01740 at 435.851 kb on - strand, within HMPREF1078_RS01740 at 435.919 kb on - strand, within HMPREF1078_RS01740 at 435.924 kb on - strand, within HMPREF1078_RS01740 at 435.924 kb on - strand, within HMPREF1078_RS01740 at 436.010 kb on + strand, within HMPREF1078_RS01740 at 436.010 kb on + strand, within HMPREF1078_RS01740 at 436.010 kb on + strand, within HMPREF1078_RS01740 at 436.010 kb on + strand, within HMPREF1078_RS01740 at 436.010 kb on + strand, within HMPREF1078_RS01740 at 436.011 kb on - strand, within HMPREF1078_RS01740 at 436.011 kb on - strand, within HMPREF1078_RS01740 at 436.011 kb on - strand, within HMPREF1078_RS01740 at 436.011 kb on - strand, within HMPREF1078_RS01740 at 436.011 kb on - strand, within HMPREF1078_RS01740 at 436.011 kb on - strand, within HMPREF1078_RS01740 at 436.011 kb on - strand, within HMPREF1078_RS01740 at 436.011 kb on - strand, within HMPREF1078_RS01740 at 436.014 kb on + strand, within HMPREF1078_RS01740 at 436.014 kb on + strand, within HMPREF1078_RS01740 at 436.014 kb on + strand, within HMPREF1078_RS01740 at 436.014 kb on + strand, within HMPREF1078_RS01740 at 436.014 kb on + strand, within HMPREF1078_RS01740 at 436.014 kb on + strand, within HMPREF1078_RS01740 at 436.014 kb on + strand, within HMPREF1078_RS01740 at 436.015 kb on - strand, within HMPREF1078_RS01740 at 436.020 kb on - strand, within HMPREF1078_RS01740 at 436.020 kb on - strand, within HMPREF1078_RS01740 at 436.020 kb on - strand, within HMPREF1078_RS01740 at 436.022 kb on - strand, within HMPREF1078_RS01740 at 436.029 kb on - strand, within HMPREF1078_RS01740 at 436.033 kb on - strand, within HMPREF1078_RS01740 at 436.225 kb on + strand, within HMPREF1078_RS01740 at 436.237 kb on + strand at 436.238 kb on - strand at 436.238 kb on - strand at 436.242 kb on - strand at 436.249 kb on + strand at 436.254 kb on - strand at 436.254 kb on - strand at 436.310 kb on + strand at 436.322 kb on - strand at 436.376 kb on + strand at 436.376 kb on + strand at 436.376 kb on + strand at 436.388 kb on + strand at 436.388 kb on + strand at 436.422 kb on + strand at 436.423 kb on - strand at 436.452 kb on + strand, within HMPREF1078_RS01745 at 436.452 kb on + strand, within HMPREF1078_RS01745 at 436.453 kb on - strand, within HMPREF1078_RS01745 at 436.453 kb on - strand, within HMPREF1078_RS01745 at 436.495 kb on - strand, within HMPREF1078_RS01745 at 436.495 kb on - strand, within HMPREF1078_RS01745 at 436.495 kb on - strand, within HMPREF1078_RS01745 at 436.498 kb on + strand, within HMPREF1078_RS01745 at 436.498 kb on + strand, within HMPREF1078_RS01745 at 436.498 kb on + strand, within HMPREF1078_RS01745 at 436.498 kb on + strand, within HMPREF1078_RS01745 at 436.498 kb on + strand, within HMPREF1078_RS01745 at 436.499 kb on - strand, within HMPREF1078_RS01745 at 436.501 kb on - strand, within HMPREF1078_RS01745 at 436.513 kb on - strand, within HMPREF1078_RS01745 at 436.522 kb on + strand, within HMPREF1078_RS01745 at 436.522 kb on + strand, within HMPREF1078_RS01745 at 436.522 kb on + strand, within HMPREF1078_RS01745 at 436.523 kb on - strand, within HMPREF1078_RS01745 at 436.636 kb on + strand, within HMPREF1078_RS01745 at 436.636 kb on + strand, within HMPREF1078_RS01745 at 436.636 kb on + strand, within HMPREF1078_RS01745 at 436.636 kb on + strand, within HMPREF1078_RS01745 at 436.637 kb on - strand, within HMPREF1078_RS01745 at 436.637 kb on - strand, within HMPREF1078_RS01745 at 436.637 kb on - strand, within HMPREF1078_RS01745 at 436.637 kb on - strand, within HMPREF1078_RS01745 at 436.637 kb on - strand, within HMPREF1078_RS01745 at 436.720 kb on - strand, within HMPREF1078_RS01745 at 436.720 kb on - strand, within HMPREF1078_RS01745 at 436.720 kb on - strand, within HMPREF1078_RS01745 at 436.723 kb on + strand, within HMPREF1078_RS01745 at 436.724 kb on - strand, within HMPREF1078_RS01745 at 436.738 kb on + strand, within HMPREF1078_RS01745 at 436.739 kb on - strand, within HMPREF1078_RS01745 at 436.739 kb on - strand, within HMPREF1078_RS01745 at 436.740 kb on + strand, within HMPREF1078_RS01745 at 436.740 kb on + strand, within HMPREF1078_RS01745 at 436.741 kb on - strand, within HMPREF1078_RS01745 at 436.741 kb on - strand, within HMPREF1078_RS01745 at 436.778 kb on - strand at 436.778 kb on - strand at 436.892 kb on + strand, within HMPREF1078_RS01750 at 436.892 kb on + strand, within HMPREF1078_RS01750 at 436.892 kb on + strand, within HMPREF1078_RS01750 at 436.893 kb on - strand, within HMPREF1078_RS01750 at 436.908 kb on + strand, within HMPREF1078_RS01750 at 436.908 kb on + strand, within HMPREF1078_RS01750 at 436.909 kb on - strand, within HMPREF1078_RS01750 at 436.989 kb on + strand, within HMPREF1078_RS01750 at 436.989 kb on + strand, within HMPREF1078_RS01750 at 436.989 kb on + strand, within HMPREF1078_RS01750 at 436.989 kb on + strand, within HMPREF1078_RS01750 at 436.989 kb on + strand, within HMPREF1078_RS01750 at 436.990 kb on - strand, within HMPREF1078_RS01750 at 436.990 kb on - strand, within HMPREF1078_RS01750 at 436.991 kb on + strand, within HMPREF1078_RS01750 at 436.992 kb on - strand, within HMPREF1078_RS01750 at 437.120 kb on + strand, within HMPREF1078_RS01750 at 437.120 kb on + strand, within HMPREF1078_RS01750 at 437.121 kb on - strand, within HMPREF1078_RS01750 at 437.121 kb on - strand, within HMPREF1078_RS01750 at 437.121 kb on - strand, within HMPREF1078_RS01750 at 437.124 kb on + strand, within HMPREF1078_RS01750 at 437.124 kb on + strand, within HMPREF1078_RS01750 at 437.124 kb on + strand, within HMPREF1078_RS01750 at 437.152 kb on - strand, within HMPREF1078_RS01750 at 437.156 kb on + strand, within HMPREF1078_RS01750 at 437.156 kb on + strand, within HMPREF1078_RS01750 at 437.170 kb on + strand, within HMPREF1078_RS01750 at 437.171 kb on - strand, within HMPREF1078_RS01750 at 437.172 kb on + strand, within HMPREF1078_RS01750 at 437.172 kb on + strand, within HMPREF1078_RS01750 at 437.172 kb on + strand, within HMPREF1078_RS01750 at 437.172 kb on + strand, within HMPREF1078_RS01750 at 437.172 kb on + strand, within HMPREF1078_RS01750 at 437.173 kb on - strand, within HMPREF1078_RS01750 at 437.173 kb on - strand, within HMPREF1078_RS01750 at 437.173 kb on - strand, within HMPREF1078_RS01750 at 437.184 kb on + strand, within HMPREF1078_RS01750 at 437.237 kb on - strand, within HMPREF1078_RS01750 at 437.247 kb on - strand, within HMPREF1078_RS01750 at 437.248 kb on + strand, within HMPREF1078_RS01750 at 437.249 kb on - strand, within HMPREF1078_RS01750 at 437.390 kb on + strand, within HMPREF1078_RS01750 at 437.471 kb on + strand, within HMPREF1078_RS01750 at 437.490 kb on + strand, within HMPREF1078_RS01750 at 437.491 kb on - strand, within HMPREF1078_RS01750 at 437.492 kb on + strand, within HMPREF1078_RS01750 at 437.544 kb on - strand, within HMPREF1078_RS01750 at 437.570 kb on + strand, within HMPREF1078_RS01750 at 437.571 kb on - strand, within HMPREF1078_RS01750 at 437.654 kb on + strand at 437.671 kb on + strand at 437.763 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/mL (C) remove 435,711 + +0.5 435,711 + -1.0 435,714 + +0.4 435,714 + +0.1 435,714 + -1.5 435,714 + +0.5 435,714 + -0.7 435,738 - -2.2 435,799 + HMPREF1078_RS01740 0.11 -1.3 435,800 - HMPREF1078_RS01740 0.12 -0.3 435,800 - HMPREF1078_RS01740 0.12 +0.7 435,828 + HMPREF1078_RS01740 0.17 -1.7 435,828 + HMPREF1078_RS01740 0.17 -0.2 435,851 - HMPREF1078_RS01740 0.21 -0.7 435,919 - HMPREF1078_RS01740 0.33 -0.8 435,924 - HMPREF1078_RS01740 0.34 -0.9 435,924 - HMPREF1078_RS01740 0.34 -0.3 436,010 + HMPREF1078_RS01740 0.50 -0.6 436,010 + HMPREF1078_RS01740 0.50 -1.5 436,010 + HMPREF1078_RS01740 0.50 +0.6 436,010 + HMPREF1078_RS01740 0.50 +0.0 436,010 + HMPREF1078_RS01740 0.50 -0.7 436,011 - HMPREF1078_RS01740 0.50 +0.2 436,011 - HMPREF1078_RS01740 0.50 +0.2 436,011 - HMPREF1078_RS01740 0.50 +0.0 436,011 - HMPREF1078_RS01740 0.50 +0.4 436,011 - HMPREF1078_RS01740 0.50 +0.5 436,011 - HMPREF1078_RS01740 0.50 +0.9 436,011 - HMPREF1078_RS01740 0.50 +0.5 436,011 - HMPREF1078_RS01740 0.50 -1.4 436,014 + HMPREF1078_RS01740 0.50 -2.5 436,014 + HMPREF1078_RS01740 0.50 +0.5 436,014 + HMPREF1078_RS01740 0.50 +0.5 436,014 + HMPREF1078_RS01740 0.50 +0.1 436,014 + HMPREF1078_RS01740 0.50 -0.2 436,014 + HMPREF1078_RS01740 0.50 -0.7 436,014 + HMPREF1078_RS01740 0.50 -0.6 436,015 - HMPREF1078_RS01740 0.51 +0.9 436,020 - HMPREF1078_RS01740 0.51 +0.4 436,020 - HMPREF1078_RS01740 0.51 +0.5 436,020 - HMPREF1078_RS01740 0.51 +0.7 436,022 - HMPREF1078_RS01740 0.52 +0.3 436,029 - HMPREF1078_RS01740 0.53 +1.0 436,033 - HMPREF1078_RS01740 0.54 -0.2 436,225 + HMPREF1078_RS01740 0.89 +0.7 436,237 + -0.0 436,238 - +0.4 436,238 - +0.4 436,242 - +0.9 436,249 + +0.4 436,254 - -0.5 436,254 - -0.3 436,310 + -1.3 436,322 - +0.2 436,376 + +1.0 436,376 + +0.2 436,376 + +1.0 436,388 + +0.7 436,388 + -1.4 436,422 + -0.8 436,423 - -2.3 436,452 + HMPREF1078_RS01745 0.10 -1.3 436,452 + HMPREF1078_RS01745 0.10 +0.1 436,453 - HMPREF1078_RS01745 0.11 +1.2 436,453 - HMPREF1078_RS01745 0.11 -1.1 436,495 - HMPREF1078_RS01745 0.22 +0.5 436,495 - HMPREF1078_RS01745 0.22 +0.0 436,495 - HMPREF1078_RS01745 0.22 +1.1 436,498 + HMPREF1078_RS01745 0.23 +2.1 436,498 + HMPREF1078_RS01745 0.23 +0.0 436,498 + HMPREF1078_RS01745 0.23 +0.5 436,498 + HMPREF1078_RS01745 0.23 +0.3 436,498 + HMPREF1078_RS01745 0.23 -0.6 436,499 - HMPREF1078_RS01745 0.23 -0.8 436,501 - HMPREF1078_RS01745 0.24 +0.3 436,513 - HMPREF1078_RS01745 0.27 -0.5 436,522 + HMPREF1078_RS01745 0.30 +0.5 436,522 + HMPREF1078_RS01745 0.30 -0.6 436,522 + HMPREF1078_RS01745 0.30 -0.9 436,523 - HMPREF1078_RS01745 0.30 -0.5 436,636 + HMPREF1078_RS01745 0.61 +1.0 436,636 + HMPREF1078_RS01745 0.61 -0.4 436,636 + HMPREF1078_RS01745 0.61 +1.6 436,636 + HMPREF1078_RS01745 0.61 +0.6 436,637 - HMPREF1078_RS01745 0.61 -0.9 436,637 - HMPREF1078_RS01745 0.61 -1.1 436,637 - HMPREF1078_RS01745 0.61 +1.3 436,637 - HMPREF1078_RS01745 0.61 +0.2 436,637 - HMPREF1078_RS01745 0.61 +0.0 436,720 - HMPREF1078_RS01745 0.84 -1.5 436,720 - HMPREF1078_RS01745 0.84 +1.9 436,720 - HMPREF1078_RS01745 0.84 -1.2 436,723 + HMPREF1078_RS01745 0.84 -0.9 436,724 - HMPREF1078_RS01745 0.85 +0.1 436,738 + HMPREF1078_RS01745 0.89 +0.5 436,739 - HMPREF1078_RS01745 0.89 -0.2 436,739 - HMPREF1078_RS01745 0.89 +1.6 436,740 + HMPREF1078_RS01745 0.89 -1.1 436,740 + HMPREF1078_RS01745 0.89 -0.8 436,741 - HMPREF1078_RS01745 0.89 -1.0 436,741 - HMPREF1078_RS01745 0.89 +0.7 436,778 - +1.0 436,778 - +0.3 436,892 + HMPREF1078_RS01750 0.11 -2.8 436,892 + HMPREF1078_RS01750 0.11 -0.3 436,892 + HMPREF1078_RS01750 0.11 -1.1 436,893 - HMPREF1078_RS01750 0.11 -0.9 436,908 + HMPREF1078_RS01750 0.12 -2.4 436,908 + HMPREF1078_RS01750 0.12 -0.0 436,909 - HMPREF1078_RS01750 0.12 -2.5 436,989 + HMPREF1078_RS01750 0.22 +1.0 436,989 + HMPREF1078_RS01750 0.22 -3.4 436,989 + HMPREF1078_RS01750 0.22 +0.4 436,989 + HMPREF1078_RS01750 0.22 +1.0 436,989 + HMPREF1078_RS01750 0.22 +0.7 436,990 - HMPREF1078_RS01750 0.22 -1.2 436,990 - HMPREF1078_RS01750 0.22 -0.1 436,991 + HMPREF1078_RS01750 0.22 -2.4 436,992 - HMPREF1078_RS01750 0.22 -0.2 437,120 + HMPREF1078_RS01750 0.36 +0.2 437,120 + HMPREF1078_RS01750 0.36 -0.2 437,121 - HMPREF1078_RS01750 0.36 -0.1 437,121 - HMPREF1078_RS01750 0.36 -1.2 437,121 - HMPREF1078_RS01750 0.36 -0.2 437,124 + HMPREF1078_RS01750 0.37 -0.2 437,124 + HMPREF1078_RS01750 0.37 -0.7 437,124 + HMPREF1078_RS01750 0.37 -1.8 437,152 - HMPREF1078_RS01750 0.40 -1.0 437,156 + HMPREF1078_RS01750 0.40 -0.5 437,156 + HMPREF1078_RS01750 0.40 +0.5 437,170 + HMPREF1078_RS01750 0.42 -1.3 437,171 - HMPREF1078_RS01750 0.42 -2.1 437,172 + HMPREF1078_RS01750 0.42 +0.8 437,172 + HMPREF1078_RS01750 0.42 +0.9 437,172 + HMPREF1078_RS01750 0.42 -1.7 437,172 + HMPREF1078_RS01750 0.42 +0.8 437,172 + HMPREF1078_RS01750 0.42 -2.6 437,173 - HMPREF1078_RS01750 0.42 +0.6 437,173 - HMPREF1078_RS01750 0.42 +0.8 437,173 - HMPREF1078_RS01750 0.42 +0.2 437,184 + HMPREF1078_RS01750 0.43 +0.3 437,237 - HMPREF1078_RS01750 0.49 -1.1 437,247 - HMPREF1078_RS01750 0.51 -0.7 437,248 + HMPREF1078_RS01750 0.51 -1.7 437,249 - HMPREF1078_RS01750 0.51 -0.2 437,390 + HMPREF1078_RS01750 0.67 +1.6 437,471 + HMPREF1078_RS01750 0.76 +1.5 437,490 + HMPREF1078_RS01750 0.78 -2.8 437,491 - HMPREF1078_RS01750 0.78 -1.3 437,492 + HMPREF1078_RS01750 0.78 +0.3 437,544 - HMPREF1078_RS01750 0.84 -0.2 437,570 + HMPREF1078_RS01750 0.87 -2.2 437,571 - HMPREF1078_RS01750 0.87 +0.3 437,654 + +1.2 437,671 + +0.7 437,763 + -1.6
Or see this region's nucleotide sequence