Strain Fitness in Pseudomonas sp. BP01 around JOY50_RS00735

Experiment: supernatant control, M9 with 0.1X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJOY50_RS00730 and JOY50_RS00735 are separated by 402 nucleotidesJOY50_RS00735 and JOY50_RS00740 are separated by 403 nucleotides JOY50_RS00730: JOY50_RS00730 - flagellin, at 166,926 to 168,623 _RS00730 JOY50_RS00735: JOY50_RS00735 - ketoacyl-ACP synthase III, at 169,026 to 169,955 _RS00735 JOY50_RS00740: JOY50_RS00740 - flagellar hook-associated protein 3, at 170,359 to 171,924 _RS00740 Position (kb) 169 170Strain fitness (log2 ratio) -2 -1 0 1 2at 168.026 kb on - strand, within JOY50_RS00730at 168.065 kb on - strand, within JOY50_RS00730at 168.077 kb on - strand, within JOY50_RS00730at 168.186 kb on - strand, within JOY50_RS00730at 168.187 kb on - strand, within JOY50_RS00730at 168.190 kb on + strand, within JOY50_RS00730at 168.213 kb on - strand, within JOY50_RS00730at 168.224 kb on - strand, within JOY50_RS00730at 168.272 kb on - strand, within JOY50_RS00730at 168.320 kb on - strand, within JOY50_RS00730at 168.320 kb on - strand, within JOY50_RS00730at 168.362 kb on - strand, within JOY50_RS00730at 168.364 kb on - strand, within JOY50_RS00730at 168.401 kb on - strand, within JOY50_RS00730at 168.453 kb on - strand, within JOY50_RS00730at 168.453 kb on - strand, within JOY50_RS00730at 168.453 kb on - strand, within JOY50_RS00730at 168.453 kb on - strand, within JOY50_RS00730at 168.453 kb on - strand, within JOY50_RS00730at 168.453 kb on - strand, within JOY50_RS00730at 168.453 kb on - strand, within JOY50_RS00730at 168.531 kb on - strandat 168.554 kb on - strandat 168.584 kb on - strandat 168.593 kb on - strandat 168.594 kb on + strandat 168.602 kb on - strandat 169.023 kb on - strandat 169.025 kb on - strandat 169.025 kb on - strandat 169.025 kb on - strandat 169.065 kb on - strandat 169.151 kb on - strand, within JOY50_RS00735at 169.178 kb on - strand, within JOY50_RS00735at 169.191 kb on + strand, within JOY50_RS00735at 169.247 kb on - strand, within JOY50_RS00735at 169.247 kb on - strand, within JOY50_RS00735at 169.247 kb on - strand, within JOY50_RS00735at 169.247 kb on - strand, within JOY50_RS00735at 169.247 kb on - strand, within JOY50_RS00735at 169.326 kb on - strand, within JOY50_RS00735at 169.326 kb on - strand, within JOY50_RS00735at 169.326 kb on - strand, within JOY50_RS00735at 169.336 kb on - strand, within JOY50_RS00735at 169.370 kb on - strand, within JOY50_RS00735at 169.371 kb on - strand, within JOY50_RS00735at 169.406 kb on - strand, within JOY50_RS00735at 169.484 kb on + strand, within JOY50_RS00735at 169.492 kb on - strand, within JOY50_RS00735at 169.510 kb on - strand, within JOY50_RS00735at 169.510 kb on - strand, within JOY50_RS00735at 169.545 kb on - strand, within JOY50_RS00735at 169.589 kb on + strand, within JOY50_RS00735at 169.597 kb on - strand, within JOY50_RS00735at 169.653 kb on - strand, within JOY50_RS00735at 169.663 kb on - strand, within JOY50_RS00735at 169.673 kb on - strand, within JOY50_RS00735at 169.713 kb on - strand, within JOY50_RS00735at 169.745 kb on - strand, within JOY50_RS00735at 169.762 kb on - strand, within JOY50_RS00735at 169.762 kb on - strand, within JOY50_RS00735at 169.784 kb on - strand, within JOY50_RS00735at 169.797 kb on - strand, within JOY50_RS00735at 169.797 kb on - strand, within JOY50_RS00735at 169.807 kb on - strand, within JOY50_RS00735at 169.868 kb on - strandat 169.874 kb on - strandat 169.913 kb on - strandat 169.913 kb on - strandat 169.913 kb on - strandat 170.059 kb on - strandat 170.097 kb on - strandat 170.219 kb on + strandat 170.365 kb on - strandat 170.430 kb on + strandat 170.434 kb on - strandat 170.438 kb on - strandat 170.438 kb on - strandat 170.438 kb on - strandat 170.568 kb on - strand, within JOY50_RS00740at 170.568 kb on - strand, within JOY50_RS00740at 170.612 kb on - strand, within JOY50_RS00740at 170.640 kb on - strand, within JOY50_RS00740at 170.657 kb on - strand, within JOY50_RS00740at 170.699 kb on - strand, within JOY50_RS00740at 170.699 kb on - strand, within JOY50_RS00740at 170.699 kb on - strand, within JOY50_RS00740at 170.699 kb on - strand, within JOY50_RS00740at 170.746 kb on + strand, within JOY50_RS00740at 170.751 kb on - strand, within JOY50_RS00740at 170.822 kb on - strand, within JOY50_RS00740at 170.852 kb on + strand, within JOY50_RS00740at 170.857 kb on - strand, within JOY50_RS00740at 170.860 kb on - strand, within JOY50_RS00740at 170.860 kb on - strand, within JOY50_RS00740at 170.927 kb on - strand, within JOY50_RS00740

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Per-strain Table

Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.1X LB
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168,026 - JOY50_RS00730 0.65 +0.0
168,065 - JOY50_RS00730 0.67 -0.0
168,077 - JOY50_RS00730 0.68 +0.1
168,186 - JOY50_RS00730 0.74 +0.1
168,187 - JOY50_RS00730 0.74 +0.2
168,190 + JOY50_RS00730 0.74 +0.3
168,213 - JOY50_RS00730 0.76 +0.4
168,224 - JOY50_RS00730 0.76 -0.4
168,272 - JOY50_RS00730 0.79 +1.3
168,320 - JOY50_RS00730 0.82 -0.3
168,320 - JOY50_RS00730 0.82 +1.8
168,362 - JOY50_RS00730 0.85 -0.5
168,364 - JOY50_RS00730 0.85 +0.2
168,401 - JOY50_RS00730 0.87 -0.4
168,453 - JOY50_RS00730 0.90 -0.3
168,453 - JOY50_RS00730 0.90 +0.4
168,453 - JOY50_RS00730 0.90 +0.9
168,453 - JOY50_RS00730 0.90 +0.4
168,453 - JOY50_RS00730 0.90 +0.6
168,453 - JOY50_RS00730 0.90 +1.4
168,453 - JOY50_RS00730 0.90 +0.1
168,531 - +0.1
168,554 - +0.5
168,584 - +1.0
168,593 - +0.6
168,594 + -0.3
168,602 - +0.2
169,023 - -0.3
169,025 - +0.4
169,025 - -1.0
169,025 - +0.7
169,065 - +0.4
169,151 - JOY50_RS00735 0.13 -1.4
169,178 - JOY50_RS00735 0.16 -1.4
169,191 + JOY50_RS00735 0.18 -1.0
169,247 - JOY50_RS00735 0.24 -0.4
169,247 - JOY50_RS00735 0.24 +0.4
169,247 - JOY50_RS00735 0.24 -0.8
169,247 - JOY50_RS00735 0.24 -0.4
169,247 - JOY50_RS00735 0.24 -0.4
169,326 - JOY50_RS00735 0.32 -2.1
169,326 - JOY50_RS00735 0.32 -1.6
169,326 - JOY50_RS00735 0.32 -1.6
169,336 - JOY50_RS00735 0.33 -0.3
169,370 - JOY50_RS00735 0.37 -0.5
169,371 - JOY50_RS00735 0.37 +1.0
169,406 - JOY50_RS00735 0.41 +0.0
169,484 + JOY50_RS00735 0.49 -1.1
169,492 - JOY50_RS00735 0.50 -0.7
169,510 - JOY50_RS00735 0.52 -1.2
169,510 - JOY50_RS00735 0.52 -1.3
169,545 - JOY50_RS00735 0.56 -1.4
169,589 + JOY50_RS00735 0.61 -2.4
169,597 - JOY50_RS00735 0.61 -1.7
169,653 - JOY50_RS00735 0.67 -0.4
169,663 - JOY50_RS00735 0.68 -0.9
169,673 - JOY50_RS00735 0.70 -1.5
169,713 - JOY50_RS00735 0.74 +1.3
169,745 - JOY50_RS00735 0.77 -2.5
169,762 - JOY50_RS00735 0.79 -1.0
169,762 - JOY50_RS00735 0.79 +0.4
169,784 - JOY50_RS00735 0.82 +0.0
169,797 - JOY50_RS00735 0.83 -1.6
169,797 - JOY50_RS00735 0.83 -1.0
169,807 - JOY50_RS00735 0.84 -1.2
169,868 - +0.2
169,874 - +0.5
169,913 - -0.5
169,913 - -0.2
169,913 - -0.9
170,059 - -0.4
170,097 - -0.4
170,219 + +0.1
170,365 - -0.1
170,430 + +0.4
170,434 - +0.5
170,438 - -0.0
170,438 - +0.6
170,438 - -0.2
170,568 - JOY50_RS00740 0.13 -0.2
170,568 - JOY50_RS00740 0.13 +0.1
170,612 - JOY50_RS00740 0.16 -0.1
170,640 - JOY50_RS00740 0.18 -0.2
170,657 - JOY50_RS00740 0.19 +0.1
170,699 - JOY50_RS00740 0.22 -0.1
170,699 - JOY50_RS00740 0.22 -0.0
170,699 - JOY50_RS00740 0.22 +0.2
170,699 - JOY50_RS00740 0.22 +0.1
170,746 + JOY50_RS00740 0.25 +0.5
170,751 - JOY50_RS00740 0.25 +0.1
170,822 - JOY50_RS00740 0.30 +0.5
170,852 + JOY50_RS00740 0.31 -0.4
170,857 - JOY50_RS00740 0.32 +0.3
170,860 - JOY50_RS00740 0.32 -0.4
170,860 - JOY50_RS00740 0.32 +1.0
170,927 - JOY50_RS00740 0.36 -0.3

Or see this region's nucleotide sequence