Experiment: .-Glucan from yeast 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS15540 and HMPREF1078_RS15545 are separated by 93 nucleotides HMPREF1078_RS15545 and HMPREF1078_RS15550 are separated by 38 nucleotides
HMPREF1078_RS15540: HMPREF1078_RS15540 - RagB/SusD family nutrient uptake outer membrane protein, at 211,200 to 212,822
_RS15540
HMPREF1078_RS15545: HMPREF1078_RS15545 - glycoside hydrolase family 2 TIM barrel-domain containing protein, at 212,916 to 215,828
_RS15545
HMPREF1078_RS15550: HMPREF1078_RS15550 - hypothetical protein, at 215,867 to 216,907
_RS15550
Position (kb) 212
213
214
215
216 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 211.951 kb on + strand, within HMPREF1078_RS15540 at 211.951 kb on + strand, within HMPREF1078_RS15540 at 212.007 kb on + strand, within HMPREF1078_RS15540 at 212.007 kb on + strand, within HMPREF1078_RS15540 at 212.008 kb on - strand, within HMPREF1078_RS15540 at 212.008 kb on - strand, within HMPREF1078_RS15540 at 212.009 kb on + strand, within HMPREF1078_RS15540 at 212.037 kb on - strand, within HMPREF1078_RS15540 at 212.037 kb on - strand, within HMPREF1078_RS15540 at 212.068 kb on - strand, within HMPREF1078_RS15540 at 212.105 kb on + strand, within HMPREF1078_RS15540 at 212.193 kb on + strand, within HMPREF1078_RS15540 at 212.193 kb on + strand, within HMPREF1078_RS15540 at 212.194 kb on - strand, within HMPREF1078_RS15540 at 212.194 kb on - strand, within HMPREF1078_RS15540 at 212.243 kb on + strand, within HMPREF1078_RS15540 at 212.243 kb on + strand, within HMPREF1078_RS15540 at 212.310 kb on + strand, within HMPREF1078_RS15540 at 212.387 kb on - strand, within HMPREF1078_RS15540 at 212.389 kb on + strand, within HMPREF1078_RS15540 at 212.397 kb on + strand, within HMPREF1078_RS15540 at 212.397 kb on + strand, within HMPREF1078_RS15540 at 212.398 kb on - strand, within HMPREF1078_RS15540 at 212.398 kb on - strand, within HMPREF1078_RS15540 at 212.398 kb on - strand, within HMPREF1078_RS15540 at 212.398 kb on - strand, within HMPREF1078_RS15540 at 212.441 kb on - strand, within HMPREF1078_RS15540 at 212.442 kb on + strand, within HMPREF1078_RS15540 at 212.442 kb on + strand, within HMPREF1078_RS15540 at 212.443 kb on - strand, within HMPREF1078_RS15540 at 212.443 kb on - strand, within HMPREF1078_RS15540 at 212.447 kb on + strand, within HMPREF1078_RS15540 at 212.473 kb on + strand, within HMPREF1078_RS15540 at 212.473 kb on + strand, within HMPREF1078_RS15540 at 212.477 kb on + strand, within HMPREF1078_RS15540 at 212.478 kb on - strand, within HMPREF1078_RS15540 at 212.478 kb on - strand, within HMPREF1078_RS15540 at 212.478 kb on - strand, within HMPREF1078_RS15540 at 212.499 kb on - strand, within HMPREF1078_RS15540 at 212.502 kb on + strand, within HMPREF1078_RS15540 at 212.503 kb on - strand, within HMPREF1078_RS15540 at 212.503 kb on - strand, within HMPREF1078_RS15540 at 212.557 kb on + strand, within HMPREF1078_RS15540 at 212.691 kb on + strand at 212.708 kb on - strand at 212.708 kb on - strand at 212.786 kb on + strand at 212.797 kb on + strand at 212.833 kb on + strand at 212.833 kb on + strand at 212.835 kb on + strand at 212.858 kb on + strand at 212.859 kb on - strand at 212.861 kb on - strand at 212.877 kb on + strand at 212.878 kb on - strand at 212.880 kb on - strand at 212.895 kb on - strand at 212.907 kb on + strand at 212.912 kb on + strand at 212.913 kb on - strand at 212.913 kb on - strand at 212.913 kb on - strand at 212.913 kb on - strand at 212.913 kb on - strand at 212.913 kb on - strand at 212.913 kb on - strand at 212.942 kb on + strand at 212.984 kb on + strand at 212.985 kb on - strand at 213.111 kb on - strand at 213.203 kb on + strand at 213.203 kb on + strand at 213.297 kb on + strand, within HMPREF1078_RS15545 at 213.297 kb on + strand, within HMPREF1078_RS15545 at 213.297 kb on + strand, within HMPREF1078_RS15545 at 213.344 kb on + strand, within HMPREF1078_RS15545 at 213.430 kb on - strand, within HMPREF1078_RS15545 at 213.430 kb on - strand, within HMPREF1078_RS15545 at 213.478 kb on + strand, within HMPREF1078_RS15545 at 213.479 kb on - strand, within HMPREF1078_RS15545 at 213.480 kb on + strand, within HMPREF1078_RS15545 at 213.481 kb on - strand, within HMPREF1078_RS15545 at 213.481 kb on - strand, within HMPREF1078_RS15545 at 213.483 kb on - strand, within HMPREF1078_RS15545 at 213.753 kb on + strand, within HMPREF1078_RS15545 at 213.753 kb on + strand, within HMPREF1078_RS15545 at 213.756 kb on - strand, within HMPREF1078_RS15545 at 213.770 kb on + strand, within HMPREF1078_RS15545 at 213.787 kb on + strand, within HMPREF1078_RS15545 at 213.800 kb on + strand, within HMPREF1078_RS15545 at 213.840 kb on - strand, within HMPREF1078_RS15545 at 213.891 kb on + strand, within HMPREF1078_RS15545 at 213.892 kb on - strand, within HMPREF1078_RS15545 at 213.892 kb on - strand, within HMPREF1078_RS15545 at 213.892 kb on - strand, within HMPREF1078_RS15545 at 213.893 kb on + strand, within HMPREF1078_RS15545 at 213.993 kb on + strand, within HMPREF1078_RS15545 at 213.993 kb on + strand, within HMPREF1078_RS15545 at 213.994 kb on - strand, within HMPREF1078_RS15545 at 213.994 kb on - strand, within HMPREF1078_RS15545 at 214.099 kb on - strand, within HMPREF1078_RS15545 at 214.099 kb on - strand, within HMPREF1078_RS15545 at 214.099 kb on - strand, within HMPREF1078_RS15545 at 214.281 kb on + strand, within HMPREF1078_RS15545 at 214.282 kb on - strand, within HMPREF1078_RS15545 at 214.297 kb on - strand, within HMPREF1078_RS15545 at 214.297 kb on - strand, within HMPREF1078_RS15545 at 214.326 kb on + strand, within HMPREF1078_RS15545 at 214.382 kb on + strand, within HMPREF1078_RS15545 at 214.401 kb on - strand, within HMPREF1078_RS15545 at 214.403 kb on - strand, within HMPREF1078_RS15545 at 214.406 kb on - strand, within HMPREF1078_RS15545 at 214.529 kb on + strand, within HMPREF1078_RS15545 at 214.572 kb on - strand, within HMPREF1078_RS15545 at 214.597 kb on - strand, within HMPREF1078_RS15545 at 214.605 kb on + strand, within HMPREF1078_RS15545 at 214.606 kb on - strand, within HMPREF1078_RS15545 at 214.635 kb on + strand, within HMPREF1078_RS15545 at 214.636 kb on - strand, within HMPREF1078_RS15545 at 214.694 kb on + strand, within HMPREF1078_RS15545 at 214.728 kb on + strand, within HMPREF1078_RS15545 at 214.758 kb on + strand, within HMPREF1078_RS15545 at 214.758 kb on + strand, within HMPREF1078_RS15545 at 214.761 kb on - strand, within HMPREF1078_RS15545 at 214.761 kb on - strand, within HMPREF1078_RS15545 at 214.787 kb on + strand, within HMPREF1078_RS15545 at 214.788 kb on - strand, within HMPREF1078_RS15545 at 214.788 kb on - strand, within HMPREF1078_RS15545 at 214.796 kb on + strand, within HMPREF1078_RS15545 at 214.799 kb on - strand, within HMPREF1078_RS15545 at 214.944 kb on + strand, within HMPREF1078_RS15545 at 215.049 kb on - strand, within HMPREF1078_RS15545 at 215.088 kb on - strand, within HMPREF1078_RS15545 at 215.213 kb on + strand, within HMPREF1078_RS15545 at 215.517 kb on - strand, within HMPREF1078_RS15545 at 215.517 kb on - strand, within HMPREF1078_RS15545 at 215.519 kb on - strand, within HMPREF1078_RS15545 at 215.537 kb on + strand at 215.538 kb on - strand at 215.576 kb on - strand at 215.604 kb on + strand at 215.605 kb on - strand at 215.605 kb on - strand at 215.652 kb on - strand at 215.657 kb on + strand at 215.657 kb on + strand at 215.657 kb on + strand at 215.657 kb on + strand at 215.657 kb on + strand at 215.701 kb on - strand at 215.827 kb on - strand at 215.830 kb on - strand at 215.835 kb on - strand at 215.836 kb on + strand at 215.836 kb on + strand at 215.836 kb on + strand at 215.837 kb on - strand at 215.838 kb on + strand at 215.838 kb on + strand at 215.839 kb on - strand at 215.839 kb on - strand at 215.839 kb on - strand at 215.844 kb on - strand at 215.880 kb on + strand at 215.880 kb on + strand at 215.882 kb on + strand at 215.882 kb on + strand at 215.882 kb on + strand at 215.882 kb on + strand at 215.882 kb on + strand at 215.883 kb on - strand at 215.884 kb on + strand at 215.884 kb on + strand at 215.885 kb on - strand at 215.885 kb on - strand at 215.978 kb on - strand, within HMPREF1078_RS15550 at 215.978 kb on - strand, within HMPREF1078_RS15550 at 215.982 kb on - strand, within HMPREF1078_RS15550 at 215.982 kb on - strand, within HMPREF1078_RS15550 at 216.093 kb on + strand, within HMPREF1078_RS15550 at 216.093 kb on + strand, within HMPREF1078_RS15550 at 216.094 kb on - strand, within HMPREF1078_RS15550 at 216.094 kb on - strand, within HMPREF1078_RS15550 at 216.146 kb on + strand, within HMPREF1078_RS15550 at 216.149 kb on + strand, within HMPREF1078_RS15550 at 216.149 kb on + strand, within HMPREF1078_RS15550 at 216.149 kb on + strand, within HMPREF1078_RS15550 at 216.149 kb on + strand, within HMPREF1078_RS15550 at 216.150 kb on - strand, within HMPREF1078_RS15550 at 216.150 kb on - strand, within HMPREF1078_RS15550 at 216.234 kb on - strand, within HMPREF1078_RS15550 at 216.236 kb on + strand, within HMPREF1078_RS15550 at 216.345 kb on + strand, within HMPREF1078_RS15550 at 216.346 kb on - strand, within HMPREF1078_RS15550 at 216.352 kb on + strand, within HMPREF1078_RS15550 at 216.353 kb on - strand, within HMPREF1078_RS15550 at 216.353 kb on - strand, within HMPREF1078_RS15550 at 216.364 kb on + strand, within HMPREF1078_RS15550 at 216.576 kb on - strand, within HMPREF1078_RS15550 at 216.749 kb on + strand, within HMPREF1078_RS15550 at 216.828 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction .-Glucan from yeast 2.5 mg/mL (C) remove 211,951 + HMPREF1078_RS15540 0.46 -2.5 211,951 + HMPREF1078_RS15540 0.46 -0.2 212,007 + HMPREF1078_RS15540 0.50 -1.2 212,007 + HMPREF1078_RS15540 0.50 +2.0 212,008 - HMPREF1078_RS15540 0.50 -2.1 212,008 - HMPREF1078_RS15540 0.50 -0.2 212,009 + HMPREF1078_RS15540 0.50 -2.5 212,037 - HMPREF1078_RS15540 0.52 +1.0 212,037 - HMPREF1078_RS15540 0.52 -2.4 212,068 - HMPREF1078_RS15540 0.53 -0.6 212,105 + HMPREF1078_RS15540 0.56 +2.3 212,193 + HMPREF1078_RS15540 0.61 -3.2 212,193 + HMPREF1078_RS15540 0.61 -3.0 212,194 - HMPREF1078_RS15540 0.61 -1.5 212,194 - HMPREF1078_RS15540 0.61 +0.4 212,243 + HMPREF1078_RS15540 0.64 +1.1 212,243 + HMPREF1078_RS15540 0.64 -0.3 212,310 + HMPREF1078_RS15540 0.68 -0.6 212,387 - HMPREF1078_RS15540 0.73 -1.3 212,389 + HMPREF1078_RS15540 0.73 +0.2 212,397 + HMPREF1078_RS15540 0.74 -1.9 212,397 + HMPREF1078_RS15540 0.74 +0.8 212,398 - HMPREF1078_RS15540 0.74 -0.7 212,398 - HMPREF1078_RS15540 0.74 -1.8 212,398 - HMPREF1078_RS15540 0.74 -0.8 212,398 - HMPREF1078_RS15540 0.74 -0.0 212,441 - HMPREF1078_RS15540 0.76 -2.3 212,442 + HMPREF1078_RS15540 0.77 +1.0 212,442 + HMPREF1078_RS15540 0.77 -0.4 212,443 - HMPREF1078_RS15540 0.77 +0.3 212,443 - HMPREF1078_RS15540 0.77 +0.6 212,447 + HMPREF1078_RS15540 0.77 +0.1 212,473 + HMPREF1078_RS15540 0.78 -2.7 212,473 + HMPREF1078_RS15540 0.78 -3.3 212,477 + HMPREF1078_RS15540 0.79 -1.6 212,478 - HMPREF1078_RS15540 0.79 +1.4 212,478 - HMPREF1078_RS15540 0.79 +0.3 212,478 - HMPREF1078_RS15540 0.79 -0.3 212,499 - HMPREF1078_RS15540 0.80 -1.9 212,502 + HMPREF1078_RS15540 0.80 -1.2 212,503 - HMPREF1078_RS15540 0.80 -1.0 212,503 - HMPREF1078_RS15540 0.80 -1.5 212,557 + HMPREF1078_RS15540 0.84 +0.5 212,691 + -1.1 212,708 - -3.8 212,708 - +0.2 212,786 + +1.2 212,797 + -1.4 212,833 + -1.8 212,833 + -1.9 212,835 + +0.4 212,858 + +1.9 212,859 - -1.9 212,861 - -1.0 212,877 + +0.7 212,878 - -3.3 212,880 - -3.7 212,895 - -1.4 212,907 + +1.4 212,912 + +0.7 212,913 - +0.1 212,913 - -0.3 212,913 - +2.5 212,913 - +0.2 212,913 - +0.2 212,913 - -0.5 212,913 - -2.4 212,942 + -2.8 212,984 + -2.9 212,985 - -2.1 213,111 - -0.8 213,203 + -1.0 213,203 + +0.8 213,297 + HMPREF1078_RS15545 0.13 +0.1 213,297 + HMPREF1078_RS15545 0.13 -0.4 213,297 + HMPREF1078_RS15545 0.13 -1.4 213,344 + HMPREF1078_RS15545 0.15 +0.8 213,430 - HMPREF1078_RS15545 0.18 -0.1 213,430 - HMPREF1078_RS15545 0.18 -2.0 213,478 + HMPREF1078_RS15545 0.19 -0.4 213,479 - HMPREF1078_RS15545 0.19 +0.4 213,480 + HMPREF1078_RS15545 0.19 -0.3 213,481 - HMPREF1078_RS15545 0.19 -1.9 213,481 - HMPREF1078_RS15545 0.19 -0.1 213,483 - HMPREF1078_RS15545 0.19 -0.4 213,753 + HMPREF1078_RS15545 0.29 +0.8 213,753 + HMPREF1078_RS15545 0.29 -1.5 213,756 - HMPREF1078_RS15545 0.29 +0.2 213,770 + HMPREF1078_RS15545 0.29 -2.4 213,787 + HMPREF1078_RS15545 0.30 -0.0 213,800 + HMPREF1078_RS15545 0.30 +0.5 213,840 - HMPREF1078_RS15545 0.32 -2.6 213,891 + HMPREF1078_RS15545 0.33 -1.8 213,892 - HMPREF1078_RS15545 0.34 -1.0 213,892 - HMPREF1078_RS15545 0.34 -0.3 213,892 - HMPREF1078_RS15545 0.34 -2.8 213,893 + HMPREF1078_RS15545 0.34 +1.8 213,993 + HMPREF1078_RS15545 0.37 +1.2 213,993 + HMPREF1078_RS15545 0.37 -1.3 213,994 - HMPREF1078_RS15545 0.37 -1.9 213,994 - HMPREF1078_RS15545 0.37 +1.0 214,099 - HMPREF1078_RS15545 0.41 -0.7 214,099 - HMPREF1078_RS15545 0.41 -0.5 214,099 - HMPREF1078_RS15545 0.41 +1.8 214,281 + HMPREF1078_RS15545 0.47 +2.3 214,282 - HMPREF1078_RS15545 0.47 +0.9 214,297 - HMPREF1078_RS15545 0.47 -0.3 214,297 - HMPREF1078_RS15545 0.47 -0.8 214,326 + HMPREF1078_RS15545 0.48 -0.1 214,382 + HMPREF1078_RS15545 0.50 -0.8 214,401 - HMPREF1078_RS15545 0.51 -0.8 214,403 - HMPREF1078_RS15545 0.51 +0.3 214,406 - HMPREF1078_RS15545 0.51 +0.6 214,529 + HMPREF1078_RS15545 0.55 +0.1 214,572 - HMPREF1078_RS15545 0.57 -0.4 214,597 - HMPREF1078_RS15545 0.58 +0.3 214,605 + HMPREF1078_RS15545 0.58 -2.7 214,606 - HMPREF1078_RS15545 0.58 -1.6 214,635 + HMPREF1078_RS15545 0.59 -0.2 214,636 - HMPREF1078_RS15545 0.59 -0.9 214,694 + HMPREF1078_RS15545 0.61 +0.4 214,728 + HMPREF1078_RS15545 0.62 -1.9 214,758 + HMPREF1078_RS15545 0.63 +0.4 214,758 + HMPREF1078_RS15545 0.63 -1.3 214,761 - HMPREF1078_RS15545 0.63 -0.7 214,761 - HMPREF1078_RS15545 0.63 -2.4 214,787 + HMPREF1078_RS15545 0.64 -0.6 214,788 - HMPREF1078_RS15545 0.64 +0.2 214,788 - HMPREF1078_RS15545 0.64 -0.0 214,796 + HMPREF1078_RS15545 0.65 -2.6 214,799 - HMPREF1078_RS15545 0.65 +0.8 214,944 + HMPREF1078_RS15545 0.70 +1.2 215,049 - HMPREF1078_RS15545 0.73 -4.7 215,088 - HMPREF1078_RS15545 0.75 -0.4 215,213 + HMPREF1078_RS15545 0.79 -1.1 215,517 - HMPREF1078_RS15545 0.89 -0.4 215,517 - HMPREF1078_RS15545 0.89 -0.9 215,519 - HMPREF1078_RS15545 0.89 +0.4 215,537 + +0.3 215,538 - -0.1 215,576 - -0.1 215,604 + -0.7 215,605 - +0.6 215,605 - +0.5 215,652 - +0.7 215,657 + +1.1 215,657 + +1.0 215,657 + +0.2 215,657 + +0.3 215,657 + +0.5 215,701 - +1.6 215,827 - -0.4 215,830 - -0.0 215,835 - -1.6 215,836 + -0.9 215,836 + +0.8 215,836 + +0.2 215,837 - +1.5 215,838 + -1.7 215,838 + +0.1 215,839 - -0.8 215,839 - -0.5 215,839 - -0.0 215,844 - +0.8 215,880 + +1.8 215,880 + +0.0 215,882 + -0.4 215,882 + -0.7 215,882 + +0.7 215,882 + +1.0 215,882 + -0.6 215,883 - -0.4 215,884 + -0.0 215,884 + -0.3 215,885 - +0.2 215,885 - +0.7 215,978 - HMPREF1078_RS15550 0.11 -0.6 215,978 - HMPREF1078_RS15550 0.11 +0.8 215,982 - HMPREF1078_RS15550 0.11 -1.8 215,982 - HMPREF1078_RS15550 0.11 -1.8 216,093 + HMPREF1078_RS15550 0.22 +0.5 216,093 + HMPREF1078_RS15550 0.22 -2.5 216,094 - HMPREF1078_RS15550 0.22 +0.6 216,094 - HMPREF1078_RS15550 0.22 -0.5 216,146 + HMPREF1078_RS15550 0.27 -1.6 216,149 + HMPREF1078_RS15550 0.27 +1.1 216,149 + HMPREF1078_RS15550 0.27 -0.2 216,149 + HMPREF1078_RS15550 0.27 -1.0 216,149 + HMPREF1078_RS15550 0.27 +0.4 216,150 - HMPREF1078_RS15550 0.27 +0.3 216,150 - HMPREF1078_RS15550 0.27 -0.1 216,234 - HMPREF1078_RS15550 0.35 -0.2 216,236 + HMPREF1078_RS15550 0.35 +0.8 216,345 + HMPREF1078_RS15550 0.46 +2.6 216,346 - HMPREF1078_RS15550 0.46 -0.3 216,352 + HMPREF1078_RS15550 0.47 -0.4 216,353 - HMPREF1078_RS15550 0.47 -1.0 216,353 - HMPREF1078_RS15550 0.47 -0.9 216,364 + HMPREF1078_RS15550 0.48 +1.7 216,576 - HMPREF1078_RS15550 0.68 -2.5 216,749 + HMPREF1078_RS15550 0.85 +2.0 216,828 - +0.5
Or see this region's nucleotide sequence