Experiment: .-Glucan from yeast 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS09085 and HMPREF1078_RS19210 are separated by 208 nucleotides HMPREF1078_RS19210 and HMPREF1078_RS09095 are separated by 33 nucleotides HMPREF1078_RS09095 and HMPREF1078_RS09100 are separated by 53 nucleotides HMPREF1078_RS09100 and HMPREF1078_RS18710 overlap by 4 nucleotides HMPREF1078_RS18710 and HMPREF1078_RS09105 are separated by 19 nucleotides HMPREF1078_RS09105 and HMPREF1078_RS09110 are separated by 24 nucleotides
HMPREF1078_RS09085: HMPREF1078_RS09085 - hypothetical protein, at 416,314 to 416,841
_RS09085
HMPREF1078_RS19210: HMPREF1078_RS19210 - hypothetical protein, at 417,050 to 417,295
_RS19210
HMPREF1078_RS09095: HMPREF1078_RS09095 - hypothetical protein, at 417,329 to 417,637
_RS09095
HMPREF1078_RS09100: HMPREF1078_RS09100 - hypothetical protein, at 417,691 to 417,936
_RS09100
HMPREF1078_RS18710: HMPREF1078_RS18710 - DUF3873 domain-containing protein, at 417,933 to 418,166
_RS18710
HMPREF1078_RS09105: HMPREF1078_RS09105 - hypothetical protein, at 418,186 to 418,443
_RS09105
HMPREF1078_RS09110: HMPREF1078_RS09110 - PcfJ domain-containing protein, at 418,468 to 419,799
_RS09110
Position (kb) 417
418 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 416.708 kb on + strand, within HMPREF1078_RS09085 at 416.708 kb on + strand, within HMPREF1078_RS09085 at 416.744 kb on - strand, within HMPREF1078_RS09085 at 416.752 kb on + strand, within HMPREF1078_RS09085 at 416.753 kb on - strand, within HMPREF1078_RS09085 at 416.753 kb on - strand, within HMPREF1078_RS09085 at 416.753 kb on - strand, within HMPREF1078_RS09085 at 416.755 kb on - strand, within HMPREF1078_RS09085 at 416.755 kb on - strand, within HMPREF1078_RS09085 at 416.755 kb on - strand, within HMPREF1078_RS09085 at 416.756 kb on + strand, within HMPREF1078_RS09085 at 416.757 kb on - strand, within HMPREF1078_RS09085 at 416.757 kb on - strand, within HMPREF1078_RS09085 at 416.831 kb on - strand at 416.831 kb on - strand at 416.831 kb on - strand at 416.833 kb on - strand at 416.833 kb on - strand at 416.874 kb on + strand at 416.879 kb on - strand at 416.910 kb on + strand at 416.911 kb on - strand at 416.921 kb on - strand at 416.991 kb on + strand at 416.992 kb on - strand at 417.022 kb on + strand at 417.022 kb on + strand at 417.023 kb on - strand at 417.023 kb on - strand at 417.103 kb on + strand, within HMPREF1078_RS19210 at 417.103 kb on + strand, within HMPREF1078_RS19210 at 417.104 kb on - strand, within HMPREF1078_RS19210 at 417.104 kb on - strand, within HMPREF1078_RS19210 at 417.145 kb on - strand, within HMPREF1078_RS19210 at 417.197 kb on + strand, within HMPREF1078_RS19210 at 417.198 kb on - strand, within HMPREF1078_RS19210 at 417.199 kb on + strand, within HMPREF1078_RS19210 at 417.199 kb on + strand, within HMPREF1078_RS19210 at 417.200 kb on - strand, within HMPREF1078_RS19210 at 417.202 kb on - strand, within HMPREF1078_RS19210 at 417.202 kb on - strand, within HMPREF1078_RS19210 at 417.218 kb on - strand, within HMPREF1078_RS19210 at 417.342 kb on + strand at 417.343 kb on - strand at 417.343 kb on - strand at 417.387 kb on + strand, within HMPREF1078_RS09095 at 417.388 kb on - strand, within HMPREF1078_RS09095 at 417.391 kb on + strand, within HMPREF1078_RS09095 at 417.392 kb on - strand, within HMPREF1078_RS09095 at 417.467 kb on - strand, within HMPREF1078_RS09095 at 417.559 kb on + strand, within HMPREF1078_RS09095 at 417.560 kb on - strand, within HMPREF1078_RS09095 at 417.560 kb on - strand, within HMPREF1078_RS09095 at 417.560 kb on - strand, within HMPREF1078_RS09095 at 417.563 kb on + strand, within HMPREF1078_RS09095 at 417.563 kb on + strand, within HMPREF1078_RS09095 at 417.617 kb on + strand at 417.618 kb on - strand at 417.637 kb on + strand at 417.638 kb on - strand at 417.650 kb on + strand at 417.663 kb on - strand at 417.754 kb on - strand, within HMPREF1078_RS09100 at 417.758 kb on + strand, within HMPREF1078_RS09100 at 417.780 kb on + strand, within HMPREF1078_RS09100 at 417.781 kb on - strand, within HMPREF1078_RS09100 at 417.822 kb on - strand, within HMPREF1078_RS09100 at 417.824 kb on - strand, within HMPREF1078_RS09100 at 417.892 kb on - strand, within HMPREF1078_RS09100 at 417.892 kb on - strand, within HMPREF1078_RS09100 at 417.910 kb on + strand, within HMPREF1078_RS09100 at 417.910 kb on + strand, within HMPREF1078_RS09100 at 417.923 kb on + strand at 417.923 kb on + strand at 417.936 kb on + strand at 417.937 kb on - strand at 418.105 kb on + strand, within HMPREF1078_RS18710 at 418.106 kb on - strand, within HMPREF1078_RS18710 at 418.138 kb on - strand, within HMPREF1078_RS18710 at 418.167 kb on - strand at 418.179 kb on + strand at 418.180 kb on - strand at 418.241 kb on + strand, within HMPREF1078_RS09105 at 418.256 kb on + strand, within HMPREF1078_RS09105 at 418.280 kb on + strand, within HMPREF1078_RS09105 at 418.281 kb on - strand, within HMPREF1078_RS09105 at 418.465 kb on - strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.470 kb on - strand at 418.494 kb on + strand at 418.495 kb on - strand at 418.522 kb on + strand at 418.523 kb on - strand at 418.542 kb on - strand at 418.603 kb on + strand, within HMPREF1078_RS09110 at 418.643 kb on - strand, within HMPREF1078_RS09110 at 418.643 kb on - strand, within HMPREF1078_RS09110 at 418.665 kb on - strand, within HMPREF1078_RS09110 at 418.712 kb on + strand, within HMPREF1078_RS09110 at 418.747 kb on + strand, within HMPREF1078_RS09110 at 418.766 kb on - strand, within HMPREF1078_RS09110 at 418.900 kb on + strand, within HMPREF1078_RS09110
Per-strain Table
Position Strand Gene LocusTag Fraction .-Glucan from yeast 2.5 mg/mL (C) remove 416,708 + HMPREF1078_RS09085 0.75 -1.2 416,708 + HMPREF1078_RS09085 0.75 -2.7 416,744 - HMPREF1078_RS09085 0.81 -0.1 416,752 + HMPREF1078_RS09085 0.83 -1.7 416,753 - HMPREF1078_RS09085 0.83 -3.3 416,753 - HMPREF1078_RS09085 0.83 -3.1 416,753 - HMPREF1078_RS09085 0.83 -3.7 416,755 - HMPREF1078_RS09085 0.84 +0.9 416,755 - HMPREF1078_RS09085 0.84 +0.9 416,755 - HMPREF1078_RS09085 0.84 +0.7 416,756 + HMPREF1078_RS09085 0.84 +0.0 416,757 - HMPREF1078_RS09085 0.84 +1.4 416,757 - HMPREF1078_RS09085 0.84 -0.9 416,831 - +1.5 416,831 - +3.4 416,831 - +0.0 416,833 - +2.7 416,833 - +0.7 416,874 + -0.4 416,879 - -3.2 416,910 + -0.3 416,911 - -1.5 416,921 - +0.1 416,991 + +0.3 416,992 - -1.0 417,022 + -2.4 417,022 + +0.9 417,023 - +1.4 417,023 - -1.5 417,103 + HMPREF1078_RS19210 0.22 +1.3 417,103 + HMPREF1078_RS19210 0.22 -0.4 417,104 - HMPREF1078_RS19210 0.22 -1.9 417,104 - HMPREF1078_RS19210 0.22 -2.5 417,145 - HMPREF1078_RS19210 0.39 -2.2 417,197 + HMPREF1078_RS19210 0.60 -2.8 417,198 - HMPREF1078_RS19210 0.60 -1.7 417,199 + HMPREF1078_RS19210 0.61 -0.2 417,199 + HMPREF1078_RS19210 0.61 -1.8 417,200 - HMPREF1078_RS19210 0.61 +2.7 417,202 - HMPREF1078_RS19210 0.62 -0.3 417,202 - HMPREF1078_RS19210 0.62 -0.6 417,218 - HMPREF1078_RS19210 0.68 -0.3 417,342 + +0.4 417,343 - -0.8 417,343 - -0.1 417,387 + HMPREF1078_RS09095 0.19 -1.8 417,388 - HMPREF1078_RS09095 0.19 +2.2 417,391 + HMPREF1078_RS09095 0.20 -0.8 417,392 - HMPREF1078_RS09095 0.20 +0.1 417,467 - HMPREF1078_RS09095 0.45 -0.8 417,559 + HMPREF1078_RS09095 0.74 +0.3 417,560 - HMPREF1078_RS09095 0.75 +0.1 417,560 - HMPREF1078_RS09095 0.75 -0.5 417,560 - HMPREF1078_RS09095 0.75 +2.0 417,563 + HMPREF1078_RS09095 0.76 +1.1 417,563 + HMPREF1078_RS09095 0.76 -0.8 417,617 + -0.1 417,618 - +0.1 417,637 + -1.5 417,638 - -2.5 417,650 + +0.7 417,663 - +2.4 417,754 - HMPREF1078_RS09100 0.26 -1.0 417,758 + HMPREF1078_RS09100 0.27 +2.0 417,780 + HMPREF1078_RS09100 0.36 +0.2 417,781 - HMPREF1078_RS09100 0.37 -3.2 417,822 - HMPREF1078_RS09100 0.53 -1.2 417,824 - HMPREF1078_RS09100 0.54 +0.6 417,892 - HMPREF1078_RS09100 0.82 -0.6 417,892 - HMPREF1078_RS09100 0.82 -0.8 417,910 + HMPREF1078_RS09100 0.89 -2.4 417,910 + HMPREF1078_RS09100 0.89 -0.5 417,923 + +0.0 417,923 + -2.1 417,936 + +2.3 417,937 - -2.5 418,105 + HMPREF1078_RS18710 0.74 -3.5 418,106 - HMPREF1078_RS18710 0.74 -2.4 418,138 - HMPREF1078_RS18710 0.88 +0.8 418,167 - -1.5 418,179 + +1.3 418,180 - -2.5 418,241 + HMPREF1078_RS09105 0.21 +0.1 418,256 + HMPREF1078_RS09105 0.27 +1.3 418,280 + HMPREF1078_RS09105 0.36 +0.0 418,281 - HMPREF1078_RS09105 0.37 +2.8 418,465 - +0.2 418,469 + +0.1 418,469 + -0.3 418,470 - -0.9 418,494 + +0.2 418,495 - +0.5 418,522 + +1.6 418,523 - -1.1 418,542 - -0.5 418,603 + HMPREF1078_RS09110 0.10 -1.7 418,643 - HMPREF1078_RS09110 0.13 -2.8 418,643 - HMPREF1078_RS09110 0.13 -0.8 418,665 - HMPREF1078_RS09110 0.15 +1.1 418,712 + HMPREF1078_RS09110 0.18 +0.8 418,747 + HMPREF1078_RS09110 0.21 +0.4 418,766 - HMPREF1078_RS09110 0.22 +1.7 418,900 + HMPREF1078_RS09110 0.32 -0.1
Or see this region's nucleotide sequence