Experiment: .-Glucan from yeast 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05950 and HMPREF1078_RS05955 are separated by 91 nucleotides HMPREF1078_RS05955 and HMPREF1078_RS05960 are separated by 143 nucleotides
HMPREF1078_RS05950: HMPREF1078_RS05950 - cysteine--tRNA ligase, at 525,701 to 527,179
_RS05950
HMPREF1078_RS05955: HMPREF1078_RS05955 - PaaI family thioesterase, at 527,271 to 527,678
_RS05955
HMPREF1078_RS05960: HMPREF1078_RS05960 - ABC transporter permease, at 527,822 to 530,245
_RS05960
Position (kb) 527
528 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 527.214 kb on - strand at 527.214 kb on - strand at 527.225 kb on + strand at 527.266 kb on + strand at 527.401 kb on + strand, within HMPREF1078_RS05955 at 527.401 kb on + strand, within HMPREF1078_RS05955 at 527.401 kb on + strand, within HMPREF1078_RS05955 at 527.401 kb on + strand, within HMPREF1078_RS05955 at 527.498 kb on + strand, within HMPREF1078_RS05955 at 527.671 kb on + strand at 527.692 kb on - strand at 527.760 kb on + strand at 527.761 kb on - strand at 527.762 kb on + strand at 527.766 kb on - strand at 527.780 kb on - strand at 527.805 kb on + strand at 527.811 kb on - strand at 527.811 kb on - strand at 527.811 kb on - strand at 527.818 kb on + strand at 527.909 kb on + strand at 527.910 kb on - strand at 527.962 kb on - strand at 528.164 kb on - strand, within HMPREF1078_RS05960 at 528.255 kb on + strand, within HMPREF1078_RS05960 at 528.256 kb on - strand, within HMPREF1078_RS05960 at 528.261 kb on + strand, within HMPREF1078_RS05960 at 528.349 kb on + strand, within HMPREF1078_RS05960 at 528.350 kb on - strand, within HMPREF1078_RS05960 at 528.350 kb on - strand, within HMPREF1078_RS05960 at 528.350 kb on - strand, within HMPREF1078_RS05960 at 528.351 kb on + strand, within HMPREF1078_RS05960 at 528.529 kb on + strand, within HMPREF1078_RS05960
Per-strain Table
Position Strand Gene LocusTag Fraction .-Glucan from yeast 2.5 mg/mL (C) remove 527,214 - -2.7 527,214 - +1.5 527,225 + -1.8 527,266 + -2.2 527,401 + HMPREF1078_RS05955 0.32 -1.0 527,401 + HMPREF1078_RS05955 0.32 -0.7 527,401 + HMPREF1078_RS05955 0.32 +0.1 527,401 + HMPREF1078_RS05955 0.32 -2.8 527,498 + HMPREF1078_RS05955 0.56 -0.0 527,671 + -1.8 527,692 - -0.4 527,760 + -0.0 527,761 - -0.4 527,762 + -2.5 527,766 - +1.7 527,780 - -0.1 527,805 + +0.5 527,811 - +0.9 527,811 - +1.5 527,811 - -0.7 527,818 + -0.2 527,909 + -1.6 527,910 - -1.4 527,962 - +0.1 528,164 - HMPREF1078_RS05960 0.14 -0.6 528,255 + HMPREF1078_RS05960 0.18 +1.1 528,256 - HMPREF1078_RS05960 0.18 +0.0 528,261 + HMPREF1078_RS05960 0.18 +0.5 528,349 + HMPREF1078_RS05960 0.22 -0.2 528,350 - HMPREF1078_RS05960 0.22 +0.7 528,350 - HMPREF1078_RS05960 0.22 +1.3 528,350 - HMPREF1078_RS05960 0.22 +0.2 528,351 + HMPREF1078_RS05960 0.22 +1.4 528,529 + HMPREF1078_RS05960 0.29 -1.5
Or see this region's nucleotide sequence