Experiment: .-Glucan from yeast 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04465 and HMPREF1078_RS04470 are separated by 81 nucleotides HMPREF1078_RS04470 and HMPREF1078_RS04475 are separated by 73 nucleotides HMPREF1078_RS04475 and HMPREF1078_RS04480 are separated by 15 nucleotides HMPREF1078_RS04480 and HMPREF1078_RS04485 are separated by 7 nucleotides HMPREF1078_RS04485 and HMPREF1078_RS04490 are separated by 126 nucleotides
HMPREF1078_RS04465: HMPREF1078_RS04465 - HU family DNA-binding protein, at 128,389 to 128,835
_RS04465
HMPREF1078_RS04470: HMPREF1078_RS04470 - DUF4248 domain-containing protein, at 128,917 to 129,141
_RS04470
HMPREF1078_RS04475: HMPREF1078_RS04475 - glucosaminidase domain-containing protein, at 129,215 to 129,715
_RS04475
HMPREF1078_RS04480: HMPREF1078_RS04480 - hypothetical protein, at 129,731 to 130,078
_RS04480
HMPREF1078_RS04485: HMPREF1078_RS04485 - T9SS type A sorting domain-containing protein, at 130,086 to 130,415
_RS04485
HMPREF1078_RS04490: HMPREF1078_RS04490 - ribonuclease Z, at 130,542 to 131,456
_RS04490
Position (kb) 129
130
131 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 128.756 kb on - strand, within HMPREF1078_RS04465 at 128.869 kb on - strand at 128.946 kb on - strand, within HMPREF1078_RS04470 at 128.970 kb on - strand, within HMPREF1078_RS04470 at 128.970 kb on - strand, within HMPREF1078_RS04470 at 129.073 kb on - strand, within HMPREF1078_RS04470 at 129.112 kb on + strand, within HMPREF1078_RS04470 at 129.113 kb on - strand, within HMPREF1078_RS04470 at 129.181 kb on - strand at 129.211 kb on + strand at 129.211 kb on + strand at 129.211 kb on + strand at 129.212 kb on - strand at 129.213 kb on + strand at 129.213 kb on + strand at 129.238 kb on - strand at 129.242 kb on - strand at 129.242 kb on - strand at 129.242 kb on - strand at 129.383 kb on + strand, within HMPREF1078_RS04475 at 129.462 kb on - strand, within HMPREF1078_RS04475 at 129.581 kb on + strand, within HMPREF1078_RS04475 at 129.584 kb on - strand, within HMPREF1078_RS04475 at 129.584 kb on - strand, within HMPREF1078_RS04475 at 129.699 kb on + strand at 129.962 kb on + strand, within HMPREF1078_RS04480 at 129.962 kb on + strand, within HMPREF1078_RS04480 at 129.962 kb on + strand, within HMPREF1078_RS04480 at 129.962 kb on + strand, within HMPREF1078_RS04480 at 129.963 kb on - strand, within HMPREF1078_RS04480 at 129.963 kb on - strand, within HMPREF1078_RS04480 at 129.963 kb on - strand, within HMPREF1078_RS04480 at 129.964 kb on + strand, within HMPREF1078_RS04480 at 129.965 kb on - strand, within HMPREF1078_RS04480 at 129.965 kb on - strand, within HMPREF1078_RS04480 at 130.046 kb on + strand at 130.132 kb on + strand, within HMPREF1078_RS04485 at 130.132 kb on + strand, within HMPREF1078_RS04485 at 130.133 kb on - strand, within HMPREF1078_RS04485 at 130.133 kb on - strand, within HMPREF1078_RS04485 at 130.133 kb on - strand, within HMPREF1078_RS04485 at 130.133 kb on - strand, within HMPREF1078_RS04485 at 130.133 kb on - strand, within HMPREF1078_RS04485 at 130.135 kb on + strand, within HMPREF1078_RS04485 at 130.135 kb on + strand, within HMPREF1078_RS04485 at 130.157 kb on + strand, within HMPREF1078_RS04485 at 130.157 kb on + strand, within HMPREF1078_RS04485 at 130.157 kb on + strand, within HMPREF1078_RS04485 at 130.158 kb on - strand, within HMPREF1078_RS04485 at 130.158 kb on - strand, within HMPREF1078_RS04485 at 130.158 kb on - strand, within HMPREF1078_RS04485 at 130.206 kb on + strand, within HMPREF1078_RS04485 at 130.206 kb on + strand, within HMPREF1078_RS04485 at 130.270 kb on + strand, within HMPREF1078_RS04485 at 130.271 kb on - strand, within HMPREF1078_RS04485 at 130.401 kb on - strand at 130.415 kb on + strand at 130.416 kb on - strand at 130.418 kb on - strand at 130.418 kb on - strand at 130.436 kb on - strand at 130.464 kb on + strand at 130.478 kb on + strand at 130.631 kb on - strand at 130.810 kb on + strand, within HMPREF1078_RS04490 at 130.811 kb on - strand, within HMPREF1078_RS04490 at 130.811 kb on - strand, within HMPREF1078_RS04490 at 130.904 kb on - strand, within HMPREF1078_RS04490 at 130.904 kb on - strand, within HMPREF1078_RS04490 at 130.922 kb on + strand, within HMPREF1078_RS04490 at 130.922 kb on + strand, within HMPREF1078_RS04490 at 130.923 kb on - strand, within HMPREF1078_RS04490 at 130.977 kb on - strand, within HMPREF1078_RS04490 at 131.009 kb on - strand, within HMPREF1078_RS04490
Per-strain Table
Position Strand Gene LocusTag Fraction .-Glucan from yeast 2.5 mg/mL (C) remove 128,756 - HMPREF1078_RS04465 0.82 +0.3 128,869 - -0.2 128,946 - HMPREF1078_RS04470 0.13 +1.4 128,970 - HMPREF1078_RS04470 0.24 -0.6 128,970 - HMPREF1078_RS04470 0.24 -2.8 129,073 - HMPREF1078_RS04470 0.69 +0.0 129,112 + HMPREF1078_RS04470 0.87 -0.9 129,113 - HMPREF1078_RS04470 0.87 -0.3 129,181 - -2.2 129,211 + +0.7 129,211 + -2.3 129,211 + +0.9 129,212 - -0.4 129,213 + +0.8 129,213 + -0.5 129,238 - -2.2 129,242 - +1.9 129,242 - -2.4 129,242 - -3.3 129,383 + HMPREF1078_RS04475 0.34 +0.1 129,462 - HMPREF1078_RS04475 0.49 -1.9 129,581 + HMPREF1078_RS04475 0.73 +1.0 129,584 - HMPREF1078_RS04475 0.74 -0.2 129,584 - HMPREF1078_RS04475 0.74 -0.9 129,699 + +0.8 129,962 + HMPREF1078_RS04480 0.66 +0.6 129,962 + HMPREF1078_RS04480 0.66 -0.5 129,962 + HMPREF1078_RS04480 0.66 -0.8 129,962 + HMPREF1078_RS04480 0.66 +0.8 129,963 - HMPREF1078_RS04480 0.67 -0.5 129,963 - HMPREF1078_RS04480 0.67 -0.9 129,963 - HMPREF1078_RS04480 0.67 +0.9 129,964 + HMPREF1078_RS04480 0.67 -0.8 129,965 - HMPREF1078_RS04480 0.67 -1.1 129,965 - HMPREF1078_RS04480 0.67 -1.8 130,046 + -1.8 130,132 + HMPREF1078_RS04485 0.14 +0.4 130,132 + HMPREF1078_RS04485 0.14 +1.5 130,133 - HMPREF1078_RS04485 0.14 -3.3 130,133 - HMPREF1078_RS04485 0.14 +1.8 130,133 - HMPREF1078_RS04485 0.14 +1.3 130,133 - HMPREF1078_RS04485 0.14 -0.4 130,133 - HMPREF1078_RS04485 0.14 +0.8 130,135 + HMPREF1078_RS04485 0.15 -1.6 130,135 + HMPREF1078_RS04485 0.15 -1.5 130,157 + HMPREF1078_RS04485 0.22 -3.2 130,157 + HMPREF1078_RS04485 0.22 -2.3 130,157 + HMPREF1078_RS04485 0.22 +0.5 130,158 - HMPREF1078_RS04485 0.22 -3.6 130,158 - HMPREF1078_RS04485 0.22 +1.8 130,158 - HMPREF1078_RS04485 0.22 -2.8 130,206 + HMPREF1078_RS04485 0.36 +0.6 130,206 + HMPREF1078_RS04485 0.36 -2.9 130,270 + HMPREF1078_RS04485 0.56 +1.0 130,271 - HMPREF1078_RS04485 0.56 -3.1 130,401 - +2.4 130,415 + -0.8 130,416 - -0.9 130,418 - +0.2 130,418 - -1.3 130,436 - -0.9 130,464 + -1.8 130,478 + +0.2 130,631 - +1.2 130,810 + HMPREF1078_RS04490 0.29 +0.7 130,811 - HMPREF1078_RS04490 0.29 -2.6 130,811 - HMPREF1078_RS04490 0.29 +0.1 130,904 - HMPREF1078_RS04490 0.40 -0.9 130,904 - HMPREF1078_RS04490 0.40 +0.9 130,922 + HMPREF1078_RS04490 0.42 +0.2 130,922 + HMPREF1078_RS04490 0.42 -0.9 130,923 - HMPREF1078_RS04490 0.42 -2.3 130,977 - HMPREF1078_RS04490 0.48 -3.6 131,009 - HMPREF1078_RS04490 0.51 -0.1
Or see this region's nucleotide sequence