Experiment: .-Glucan from yeast 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00150 and HMPREF1078_RS00155 are separated by 678 nucleotides HMPREF1078_RS00155 and HMPREF1078_RS00160 are separated by 3 nucleotides
HMPREF1078_RS00150: HMPREF1078_RS00150 - tryptophan synthase subunit beta, at 33,764 to 34,957
_RS00150
HMPREF1078_RS00155: HMPREF1078_RS00155 - FecR domain-containing protein, at 35,636 to 36,517
_RS00155
HMPREF1078_RS00160: HMPREF1078_RS00160 - TonB-dependent receptor, at 36,521 to 39,229
_RS00160
Position (kb) 35
36
37 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 34.690 kb on + strand, within HMPREF1078_RS00150 at 34.728 kb on + strand, within HMPREF1078_RS00150 at 34.728 kb on + strand, within HMPREF1078_RS00150 at 34.728 kb on + strand, within HMPREF1078_RS00150 at 34.728 kb on + strand, within HMPREF1078_RS00150 at 34.728 kb on + strand, within HMPREF1078_RS00150 at 34.729 kb on - strand, within HMPREF1078_RS00150 at 34.729 kb on - strand, within HMPREF1078_RS00150 at 34.730 kb on + strand, within HMPREF1078_RS00150 at 34.731 kb on - strand, within HMPREF1078_RS00150 at 34.731 kb on - strand, within HMPREF1078_RS00150 at 34.743 kb on + strand, within HMPREF1078_RS00150 at 34.743 kb on + strand, within HMPREF1078_RS00150 at 34.744 kb on - strand, within HMPREF1078_RS00150 at 34.744 kb on - strand, within HMPREF1078_RS00150 at 34.744 kb on - strand, within HMPREF1078_RS00150 at 34.795 kb on - strand, within HMPREF1078_RS00150 at 34.844 kb on + strand at 34.854 kb on + strand at 34.902 kb on + strand at 34.902 kb on + strand at 34.902 kb on + strand at 34.902 kb on + strand at 34.903 kb on - strand at 34.903 kb on - strand at 34.903 kb on - strand at 34.903 kb on - strand at 34.903 kb on - strand at 34.903 kb on - strand at 34.903 kb on - strand at 34.903 kb on - strand at 34.903 kb on - strand at 34.923 kb on + strand at 34.923 kb on + strand at 34.924 kb on - strand at 34.924 kb on - strand at 34.963 kb on + strand at 34.964 kb on - strand at 34.971 kb on - strand at 35.050 kb on + strand at 35.050 kb on + strand at 35.050 kb on + strand at 35.050 kb on + strand at 35.050 kb on + strand at 35.050 kb on + strand at 35.051 kb on - strand at 35.051 kb on - strand at 35.051 kb on - strand at 35.053 kb on + strand at 35.054 kb on - strand at 35.054 kb on - strand at 35.054 kb on - strand at 35.054 kb on - strand at 35.056 kb on - strand at 35.056 kb on - strand at 35.056 kb on - strand at 35.063 kb on + strand at 35.063 kb on + strand at 35.063 kb on + strand at 35.063 kb on + strand at 35.064 kb on - strand at 35.064 kb on - strand at 35.066 kb on + strand at 35.066 kb on + strand at 35.066 kb on + strand at 35.066 kb on + strand at 35.066 kb on + strand at 35.066 kb on + strand at 35.066 kb on + strand at 35.066 kb on + strand at 35.067 kb on - strand at 35.067 kb on - strand at 35.067 kb on - strand at 35.067 kb on - strand at 35.068 kb on + strand at 35.068 kb on + strand at 35.069 kb on - strand at 35.070 kb on + strand at 35.070 kb on + strand at 35.070 kb on + strand at 35.070 kb on + strand at 35.070 kb on + strand at 35.071 kb on - strand at 35.071 kb on - strand at 35.071 kb on - strand at 35.071 kb on - strand at 35.071 kb on - strand at 35.098 kb on - strand at 35.107 kb on - strand at 35.107 kb on - strand at 35.107 kb on - strand at 35.125 kb on + strand at 35.125 kb on + strand at 35.126 kb on - strand at 35.126 kb on - strand at 35.129 kb on + strand at 35.130 kb on - strand at 35.130 kb on - strand at 35.130 kb on - strand at 35.130 kb on - strand at 35.130 kb on - strand at 35.130 kb on - strand at 35.130 kb on - strand at 35.130 kb on - strand at 35.134 kb on - strand at 35.134 kb on - strand at 35.136 kb on + strand at 35.137 kb on - strand at 35.137 kb on - strand at 35.138 kb on + strand at 35.138 kb on + strand at 35.138 kb on + strand at 35.139 kb on - strand at 35.226 kb on + strand at 35.228 kb on + strand at 35.230 kb on + strand at 35.278 kb on - strand at 35.278 kb on - strand at 35.313 kb on - strand at 35.355 kb on + strand at 35.356 kb on - strand at 35.377 kb on + strand at 35.377 kb on + strand at 35.409 kb on - strand at 35.479 kb on - strand at 35.498 kb on + strand at 35.499 kb on - strand at 35.513 kb on + strand at 35.594 kb on - strand at 35.609 kb on + strand at 35.615 kb on + strand at 35.656 kb on + strand at 35.657 kb on - strand at 35.659 kb on - strand at 35.659 kb on - strand at 35.844 kb on - strand, within HMPREF1078_RS00155 at 35.901 kb on + strand, within HMPREF1078_RS00155 at 35.902 kb on - strand, within HMPREF1078_RS00155 at 35.905 kb on + strand, within HMPREF1078_RS00155 at 35.957 kb on + strand, within HMPREF1078_RS00155 at 35.980 kb on + strand, within HMPREF1078_RS00155 at 35.981 kb on - strand, within HMPREF1078_RS00155 at 35.981 kb on - strand, within HMPREF1078_RS00155 at 35.991 kb on + strand, within HMPREF1078_RS00155 at 35.991 kb on + strand, within HMPREF1078_RS00155 at 35.992 kb on - strand, within HMPREF1078_RS00155 at 35.992 kb on - strand, within HMPREF1078_RS00155 at 35.992 kb on - strand, within HMPREF1078_RS00155 at 35.998 kb on - strand, within HMPREF1078_RS00155 at 36.011 kb on + strand, within HMPREF1078_RS00155 at 36.094 kb on + strand, within HMPREF1078_RS00155 at 36.094 kb on + strand, within HMPREF1078_RS00155 at 36.095 kb on - strand, within HMPREF1078_RS00155 at 36.188 kb on - strand, within HMPREF1078_RS00155 at 36.188 kb on - strand, within HMPREF1078_RS00155 at 36.237 kb on + strand, within HMPREF1078_RS00155 at 36.262 kb on + strand, within HMPREF1078_RS00155 at 36.263 kb on - strand, within HMPREF1078_RS00155 at 36.265 kb on + strand, within HMPREF1078_RS00155 at 36.379 kb on + strand, within HMPREF1078_RS00155 at 36.380 kb on - strand, within HMPREF1078_RS00155 at 36.380 kb on - strand, within HMPREF1078_RS00155 at 36.380 kb on - strand, within HMPREF1078_RS00155 at 36.487 kb on + strand at 36.488 kb on - strand at 36.511 kb on + strand at 36.527 kb on + strand at 36.535 kb on - strand at 36.535 kb on - strand at 36.535 kb on - strand at 36.535 kb on - strand at 36.536 kb on + strand at 36.563 kb on - strand at 36.704 kb on + strand at 36.704 kb on + strand at 36.705 kb on - strand at 36.718 kb on - strand at 36.780 kb on - strand at 36.780 kb on - strand at 36.835 kb on - strand, within HMPREF1078_RS00160 at 36.835 kb on - strand, within HMPREF1078_RS00160 at 36.860 kb on + strand, within HMPREF1078_RS00160 at 36.860 kb on + strand, within HMPREF1078_RS00160 at 36.862 kb on + strand, within HMPREF1078_RS00160 at 36.862 kb on + strand, within HMPREF1078_RS00160 at 36.863 kb on - strand, within HMPREF1078_RS00160 at 36.877 kb on + strand, within HMPREF1078_RS00160 at 36.878 kb on - strand, within HMPREF1078_RS00160 at 36.919 kb on + strand, within HMPREF1078_RS00160 at 37.025 kb on + strand, within HMPREF1078_RS00160 at 37.025 kb on + strand, within HMPREF1078_RS00160 at 37.068 kb on + strand, within HMPREF1078_RS00160 at 37.163 kb on - strand, within HMPREF1078_RS00160 at 37.209 kb on + strand, within HMPREF1078_RS00160 at 37.254 kb on + strand, within HMPREF1078_RS00160 at 37.286 kb on + strand, within HMPREF1078_RS00160 at 37.287 kb on - strand, within HMPREF1078_RS00160 at 37.287 kb on - strand, within HMPREF1078_RS00160 at 37.287 kb on - strand, within HMPREF1078_RS00160 at 37.287 kb on - strand, within HMPREF1078_RS00160 at 37.344 kb on - strand, within HMPREF1078_RS00160 at 37.345 kb on + strand, within HMPREF1078_RS00160 at 37.357 kb on + strand, within HMPREF1078_RS00160 at 37.358 kb on - strand, within HMPREF1078_RS00160 at 37.358 kb on - strand, within HMPREF1078_RS00160 at 37.358 kb on - strand, within HMPREF1078_RS00160
Per-strain Table
Position Strand Gene LocusTag Fraction .-Glucan from yeast 2.5 mg/mL (C) remove 34,690 + HMPREF1078_RS00150 0.78 -2.6 34,728 + HMPREF1078_RS00150 0.81 -1.2 34,728 + HMPREF1078_RS00150 0.81 -0.8 34,728 + HMPREF1078_RS00150 0.81 -0.8 34,728 + HMPREF1078_RS00150 0.81 +0.6 34,728 + HMPREF1078_RS00150 0.81 -0.9 34,729 - HMPREF1078_RS00150 0.81 +0.6 34,729 - HMPREF1078_RS00150 0.81 -2.4 34,730 + HMPREF1078_RS00150 0.81 -2.5 34,731 - HMPREF1078_RS00150 0.81 +0.3 34,731 - HMPREF1078_RS00150 0.81 -3.1 34,743 + HMPREF1078_RS00150 0.82 -2.1 34,743 + HMPREF1078_RS00150 0.82 +0.3 34,744 - HMPREF1078_RS00150 0.82 -3.2 34,744 - HMPREF1078_RS00150 0.82 -0.1 34,744 - HMPREF1078_RS00150 0.82 -3.1 34,795 - HMPREF1078_RS00150 0.86 -4.3 34,844 + -1.6 34,854 + -2.2 34,902 + -0.4 34,902 + -3.0 34,902 + -2.5 34,902 + -0.8 34,903 - -0.6 34,903 - -1.2 34,903 - -1.1 34,903 - -0.2 34,903 - -0.5 34,903 - -3.4 34,903 - -2.6 34,903 - -1.3 34,903 - -4.1 34,923 + -1.8 34,923 + -1.2 34,924 - -1.7 34,924 - -3.9 34,963 + -1.3 34,964 - -0.9 34,971 - -1.0 35,050 + -2.9 35,050 + -0.3 35,050 + -2.9 35,050 + -2.7 35,050 + -0.9 35,050 + +0.0 35,051 - +0.8 35,051 - +0.1 35,051 - +0.2 35,053 + -3.4 35,054 - -3.1 35,054 - -0.8 35,054 - +0.2 35,054 - -1.6 35,056 - -1.6 35,056 - -0.0 35,056 - +0.7 35,063 + +0.4 35,063 + -1.0 35,063 + -2.9 35,063 + +2.8 35,064 - -1.0 35,064 - -3.7 35,066 + -2.9 35,066 + +1.0 35,066 + -3.8 35,066 + -2.7 35,066 + -1.2 35,066 + -3.6 35,066 + +0.2 35,066 + -1.2 35,067 - -1.0 35,067 - -2.1 35,067 - +1.3 35,067 - +0.3 35,068 + -3.0 35,068 + -0.8 35,069 - -0.9 35,070 + -2.3 35,070 + +0.5 35,070 + -1.7 35,070 + -1.4 35,070 + -1.6 35,071 - -1.7 35,071 - +0.3 35,071 - +1.2 35,071 - +0.1 35,071 - +0.4 35,098 - -1.5 35,107 - -0.4 35,107 - -1.0 35,107 - +0.8 35,125 + -0.6 35,125 + -1.1 35,126 - +0.7 35,126 - -1.7 35,129 + -1.8 35,130 - -1.5 35,130 - -2.1 35,130 - +2.2 35,130 - -3.7 35,130 - -3.0 35,130 - -1.5 35,130 - -3.4 35,130 - +0.0 35,134 - +0.0 35,134 - -1.3 35,136 + -6.0 35,137 - -1.6 35,137 - -0.5 35,138 + -3.4 35,138 + -0.1 35,138 + -4.1 35,139 - +0.6 35,226 + -0.3 35,228 + -0.6 35,230 + -0.7 35,278 - -0.0 35,278 - +0.2 35,313 - -0.5 35,355 + -0.5 35,356 - -0.5 35,377 + -0.0 35,377 + -1.2 35,409 - +1.5 35,479 - -1.8 35,498 + -1.8 35,499 - +0.8 35,513 + -1.1 35,594 - -2.8 35,609 + +0.4 35,615 + -0.1 35,656 + +0.5 35,657 - -3.3 35,659 - -3.1 35,659 - +0.9 35,844 - HMPREF1078_RS00155 0.24 -2.1 35,901 + HMPREF1078_RS00155 0.30 -0.0 35,902 - HMPREF1078_RS00155 0.30 +1.2 35,905 + HMPREF1078_RS00155 0.30 +1.8 35,957 + HMPREF1078_RS00155 0.36 +0.7 35,980 + HMPREF1078_RS00155 0.39 -1.8 35,981 - HMPREF1078_RS00155 0.39 +0.2 35,981 - HMPREF1078_RS00155 0.39 -0.9 35,991 + HMPREF1078_RS00155 0.40 -0.5 35,991 + HMPREF1078_RS00155 0.40 +3.5 35,992 - HMPREF1078_RS00155 0.40 +0.7 35,992 - HMPREF1078_RS00155 0.40 -0.6 35,992 - HMPREF1078_RS00155 0.40 -1.0 35,998 - HMPREF1078_RS00155 0.41 -3.0 36,011 + HMPREF1078_RS00155 0.43 +0.0 36,094 + HMPREF1078_RS00155 0.52 +1.8 36,094 + HMPREF1078_RS00155 0.52 +0.1 36,095 - HMPREF1078_RS00155 0.52 -0.1 36,188 - HMPREF1078_RS00155 0.63 +1.9 36,188 - HMPREF1078_RS00155 0.63 -0.1 36,237 + HMPREF1078_RS00155 0.68 -2.1 36,262 + HMPREF1078_RS00155 0.71 -0.1 36,263 - HMPREF1078_RS00155 0.71 +1.0 36,265 + HMPREF1078_RS00155 0.71 +1.0 36,379 + HMPREF1078_RS00155 0.84 -1.0 36,380 - HMPREF1078_RS00155 0.84 -0.3 36,380 - HMPREF1078_RS00155 0.84 +1.7 36,380 - HMPREF1078_RS00155 0.84 -0.5 36,487 + +1.1 36,488 - -0.2 36,511 + +0.6 36,527 + -0.7 36,535 - +1.9 36,535 - +1.4 36,535 - +0.4 36,535 - -2.3 36,536 + +0.6 36,563 - -0.2 36,704 + -0.4 36,704 + -0.4 36,705 - -0.3 36,718 - -0.3 36,780 - -2.8 36,780 - +1.7 36,835 - HMPREF1078_RS00160 0.12 -0.3 36,835 - HMPREF1078_RS00160 0.12 +2.3 36,860 + HMPREF1078_RS00160 0.13 +2.7 36,860 + HMPREF1078_RS00160 0.13 +0.5 36,862 + HMPREF1078_RS00160 0.13 +1.9 36,862 + HMPREF1078_RS00160 0.13 -2.8 36,863 - HMPREF1078_RS00160 0.13 -3.4 36,877 + HMPREF1078_RS00160 0.13 +0.2 36,878 - HMPREF1078_RS00160 0.13 +0.8 36,919 + HMPREF1078_RS00160 0.15 -0.5 37,025 + HMPREF1078_RS00160 0.19 +0.3 37,025 + HMPREF1078_RS00160 0.19 -2.1 37,068 + HMPREF1078_RS00160 0.20 -2.3 37,163 - HMPREF1078_RS00160 0.24 -1.5 37,209 + HMPREF1078_RS00160 0.25 -2.3 37,254 + HMPREF1078_RS00160 0.27 +2.8 37,286 + HMPREF1078_RS00160 0.28 -1.1 37,287 - HMPREF1078_RS00160 0.28 +0.1 37,287 - HMPREF1078_RS00160 0.28 +2.7 37,287 - HMPREF1078_RS00160 0.28 +2.4 37,287 - HMPREF1078_RS00160 0.28 +0.4 37,344 - HMPREF1078_RS00160 0.30 -1.6 37,345 + HMPREF1078_RS00160 0.30 -0.9 37,357 + HMPREF1078_RS00160 0.31 -0.7 37,358 - HMPREF1078_RS00160 0.31 -1.4 37,358 - HMPREF1078_RS00160 0.31 -0.9 37,358 - HMPREF1078_RS00160 0.31 +0.3
Or see this region's nucleotide sequence