Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS15560

Experiment: Lentilan from mushroom 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS15555 and HMPREF1078_RS15560 are separated by 76 nucleotidesHMPREF1078_RS15560 and HMPREF1078_RS15565 are separated by 432 nucleotides HMPREF1078_RS15555: HMPREF1078_RS15555 - sulfatase-like hydrolase/transferase, at 216,931 to 218,316 _RS15555 HMPREF1078_RS15560: HMPREF1078_RS15560 - ABC-F family ATP-binding cassette domain-containing protein, at 218,393 to 220,339 _RS15560 HMPREF1078_RS15565: HMPREF1078_RS15565 - N-acetylglucosamine-6-phosphate deacetylase, at 220,772 to 221,938 _RS15565 Position (kb) 218 219 220 221Strain fitness (log2 ratio) -2 -1 0 1 2at 217.408 kb on + strand, within HMPREF1078_RS15555at 217.415 kb on - strand, within HMPREF1078_RS15555at 217.462 kb on + strand, within HMPREF1078_RS15555at 217.463 kb on - strand, within HMPREF1078_RS15555at 217.516 kb on - strand, within HMPREF1078_RS15555at 217.555 kb on - strand, within HMPREF1078_RS15555at 217.561 kb on + strand, within HMPREF1078_RS15555at 217.562 kb on - strand, within HMPREF1078_RS15555at 217.563 kb on + strand, within HMPREF1078_RS15555at 217.563 kb on + strand, within HMPREF1078_RS15555at 217.563 kb on + strand, within HMPREF1078_RS15555at 217.563 kb on + strand, within HMPREF1078_RS15555at 217.564 kb on - strand, within HMPREF1078_RS15555at 217.564 kb on - strand, within HMPREF1078_RS15555at 217.564 kb on - strand, within HMPREF1078_RS15555at 217.645 kb on + strand, within HMPREF1078_RS15555at 217.646 kb on - strand, within HMPREF1078_RS15555at 217.653 kb on + strand, within HMPREF1078_RS15555at 217.661 kb on - strand, within HMPREF1078_RS15555at 217.726 kb on - strand, within HMPREF1078_RS15555at 217.731 kb on + strand, within HMPREF1078_RS15555at 217.732 kb on - strand, within HMPREF1078_RS15555at 217.982 kb on + strand, within HMPREF1078_RS15555at 217.987 kb on + strand, within HMPREF1078_RS15555at 218.028 kb on - strand, within HMPREF1078_RS15555at 218.038 kb on - strand, within HMPREF1078_RS15555at 218.038 kb on - strand, within HMPREF1078_RS15555at 218.071 kb on + strand, within HMPREF1078_RS15555at 218.085 kb on + strand, within HMPREF1078_RS15555at 218.111 kb on - strand, within HMPREF1078_RS15555at 218.112 kb on + strand, within HMPREF1078_RS15555at 218.115 kb on + strand, within HMPREF1078_RS15555at 218.115 kb on + strand, within HMPREF1078_RS15555at 218.115 kb on + strand, within HMPREF1078_RS15555at 218.116 kb on - strand, within HMPREF1078_RS15555at 218.116 kb on - strand, within HMPREF1078_RS15555at 218.116 kb on - strand, within HMPREF1078_RS15555at 218.294 kb on + strandat 218.414 kb on - strandat 218.464 kb on - strandat 218.468 kb on - strandat 218.468 kb on - strandat 218.665 kb on + strand, within HMPREF1078_RS15560at 218.979 kb on + strand, within HMPREF1078_RS15560at 218.979 kb on + strand, within HMPREF1078_RS15560at 219.107 kb on + strand, within HMPREF1078_RS15560at 219.108 kb on - strand, within HMPREF1078_RS15560at 219.113 kb on + strand, within HMPREF1078_RS15560at 219.114 kb on - strand, within HMPREF1078_RS15560at 219.115 kb on + strand, within HMPREF1078_RS15560at 219.115 kb on + strand, within HMPREF1078_RS15560at 219.120 kb on + strand, within HMPREF1078_RS15560at 219.239 kb on - strand, within HMPREF1078_RS15560at 219.326 kb on - strand, within HMPREF1078_RS15560at 219.487 kb on + strand, within HMPREF1078_RS15560at 219.488 kb on - strand, within HMPREF1078_RS15560at 219.557 kb on - strand, within HMPREF1078_RS15560at 219.610 kb on + strand, within HMPREF1078_RS15560at 219.611 kb on - strand, within HMPREF1078_RS15560at 219.611 kb on - strand, within HMPREF1078_RS15560at 219.611 kb on - strand, within HMPREF1078_RS15560at 219.666 kb on + strand, within HMPREF1078_RS15560at 219.676 kb on - strand, within HMPREF1078_RS15560at 220.088 kb on + strand, within HMPREF1078_RS15560at 220.089 kb on - strand, within HMPREF1078_RS15560at 220.236 kb on + strandat 220.237 kb on - strandat 220.239 kb on - strandat 220.244 kb on + strandat 220.337 kb on + strandat 220.355 kb on - strandat 220.359 kb on - strandat 220.394 kb on + strandat 220.395 kb on - strandat 220.395 kb on - strandat 220.395 kb on - strandat 220.395 kb on - strandat 220.442 kb on + strandat 220.443 kb on - strandat 220.443 kb on - strandat 220.446 kb on + strandat 220.448 kb on + strandat 220.472 kb on - strandat 220.476 kb on - strandat 220.612 kb on - strandat 220.623 kb on + strandat 220.624 kb on - strandat 220.634 kb on - strandat 220.637 kb on + strandat 220.685 kb on - strandat 220.739 kb on - strandat 220.771 kb on + strandat 220.776 kb on + strandat 220.776 kb on + strandat 220.890 kb on + strand, within HMPREF1078_RS15565at 220.891 kb on - strand, within HMPREF1078_RS15565at 220.913 kb on - strand, within HMPREF1078_RS15565at 220.922 kb on + strand, within HMPREF1078_RS15565at 220.922 kb on + strand, within HMPREF1078_RS15565at 220.922 kb on + strand, within HMPREF1078_RS15565at 220.922 kb on + strand, within HMPREF1078_RS15565at 220.922 kb on + strand, within HMPREF1078_RS15565at 220.922 kb on + strand, within HMPREF1078_RS15565at 220.922 kb on + strand, within HMPREF1078_RS15565at 220.923 kb on - strand, within HMPREF1078_RS15565at 220.923 kb on - strand, within HMPREF1078_RS15565at 220.923 kb on - strand, within HMPREF1078_RS15565at 220.923 kb on - strand, within HMPREF1078_RS15565at 220.923 kb on - strand, within HMPREF1078_RS15565at 220.923 kb on - strand, within HMPREF1078_RS15565at 220.923 kb on - strand, within HMPREF1078_RS15565at 220.924 kb on + strand, within HMPREF1078_RS15565at 220.979 kb on - strand, within HMPREF1078_RS15565at 221.044 kb on + strand, within HMPREF1078_RS15565at 221.044 kb on + strand, within HMPREF1078_RS15565at 221.163 kb on - strand, within HMPREF1078_RS15565at 221.229 kb on - strand, within HMPREF1078_RS15565at 221.312 kb on + strand, within HMPREF1078_RS15565at 221.313 kb on - strand, within HMPREF1078_RS15565at 221.313 kb on - strand, within HMPREF1078_RS15565at 221.313 kb on - strand, within HMPREF1078_RS15565

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Per-strain Table

Position Strand Gene LocusTag Fraction Lentilan from mushroom 2.5 mg/mL (C)
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217,408 + HMPREF1078_RS15555 0.34 -1.0
217,415 - HMPREF1078_RS15555 0.35 -1.1
217,462 + HMPREF1078_RS15555 0.38 +0.1
217,463 - HMPREF1078_RS15555 0.38 -1.2
217,516 - HMPREF1078_RS15555 0.42 +0.5
217,555 - HMPREF1078_RS15555 0.45 +1.6
217,561 + HMPREF1078_RS15555 0.45 -0.0
217,562 - HMPREF1078_RS15555 0.46 +0.2
217,563 + HMPREF1078_RS15555 0.46 -0.2
217,563 + HMPREF1078_RS15555 0.46 +0.5
217,563 + HMPREF1078_RS15555 0.46 -1.5
217,563 + HMPREF1078_RS15555 0.46 -0.1
217,564 - HMPREF1078_RS15555 0.46 -0.6
217,564 - HMPREF1078_RS15555 0.46 -1.2
217,564 - HMPREF1078_RS15555 0.46 -1.0
217,645 + HMPREF1078_RS15555 0.52 -0.6
217,646 - HMPREF1078_RS15555 0.52 +0.2
217,653 + HMPREF1078_RS15555 0.52 +1.0
217,661 - HMPREF1078_RS15555 0.53 +0.1
217,726 - HMPREF1078_RS15555 0.57 -1.5
217,731 + HMPREF1078_RS15555 0.58 +0.6
217,732 - HMPREF1078_RS15555 0.58 +0.8
217,982 + HMPREF1078_RS15555 0.76 +1.1
217,987 + HMPREF1078_RS15555 0.76 -0.9
218,028 - HMPREF1078_RS15555 0.79 +0.5
218,038 - HMPREF1078_RS15555 0.80 -0.5
218,038 - HMPREF1078_RS15555 0.80 +0.7
218,071 + HMPREF1078_RS15555 0.82 +0.3
218,085 + HMPREF1078_RS15555 0.83 +0.3
218,111 - HMPREF1078_RS15555 0.85 -1.2
218,112 + HMPREF1078_RS15555 0.85 +0.3
218,115 + HMPREF1078_RS15555 0.85 -0.4
218,115 + HMPREF1078_RS15555 0.85 -0.8
218,115 + HMPREF1078_RS15555 0.85 -0.2
218,116 - HMPREF1078_RS15555 0.85 -0.1
218,116 - HMPREF1078_RS15555 0.85 +0.7
218,116 - HMPREF1078_RS15555 0.85 +0.8
218,294 + -0.5
218,414 - +1.8
218,464 - -1.0
218,468 - +0.8
218,468 - -0.5
218,665 + HMPREF1078_RS15560 0.14 -1.0
218,979 + HMPREF1078_RS15560 0.30 -0.0
218,979 + HMPREF1078_RS15560 0.30 -1.5
219,107 + HMPREF1078_RS15560 0.37 -2.3
219,108 - HMPREF1078_RS15560 0.37 -0.1
219,113 + HMPREF1078_RS15560 0.37 +0.1
219,114 - HMPREF1078_RS15560 0.37 -0.1
219,115 + HMPREF1078_RS15560 0.37 -0.6
219,115 + HMPREF1078_RS15560 0.37 -0.1
219,120 + HMPREF1078_RS15560 0.37 -1.0
219,239 - HMPREF1078_RS15560 0.43 +0.4
219,326 - HMPREF1078_RS15560 0.48 -1.3
219,487 + HMPREF1078_RS15560 0.56 -1.1
219,488 - HMPREF1078_RS15560 0.56 -2.1
219,557 - HMPREF1078_RS15560 0.60 -0.5
219,610 + HMPREF1078_RS15560 0.63 -0.1
219,611 - HMPREF1078_RS15560 0.63 +0.3
219,611 - HMPREF1078_RS15560 0.63 +1.0
219,611 - HMPREF1078_RS15560 0.63 -1.0
219,666 + HMPREF1078_RS15560 0.65 -0.8
219,676 - HMPREF1078_RS15560 0.66 -2.1
220,088 + HMPREF1078_RS15560 0.87 +0.0
220,089 - HMPREF1078_RS15560 0.87 -0.7
220,236 + +0.9
220,237 - -0.2
220,239 - +0.5
220,244 + +0.3
220,337 + -0.4
220,355 - +0.1
220,359 - +1.6
220,394 + +0.2
220,395 - -0.6
220,395 - +0.4
220,395 - +0.7
220,395 - +0.3
220,442 + -1.1
220,443 - +0.4
220,443 - -2.1
220,446 + -1.0
220,448 + -1.6
220,472 - -0.5
220,476 - -1.1
220,612 - +0.4
220,623 + +0.4
220,624 - -0.3
220,634 - -0.1
220,637 + +1.2
220,685 - -1.1
220,739 - -1.1
220,771 + -0.1
220,776 + -2.1
220,776 + -0.8
220,890 + HMPREF1078_RS15565 0.10 -0.2
220,891 - HMPREF1078_RS15565 0.10 -2.1
220,913 - HMPREF1078_RS15565 0.12 -1.4
220,922 + HMPREF1078_RS15565 0.13 +1.2
220,922 + HMPREF1078_RS15565 0.13 -0.5
220,922 + HMPREF1078_RS15565 0.13 +0.3
220,922 + HMPREF1078_RS15565 0.13 -0.2
220,922 + HMPREF1078_RS15565 0.13 -0.5
220,922 + HMPREF1078_RS15565 0.13 +0.8
220,922 + HMPREF1078_RS15565 0.13 -1.3
220,923 - HMPREF1078_RS15565 0.13 +1.3
220,923 - HMPREF1078_RS15565 0.13 +0.0
220,923 - HMPREF1078_RS15565 0.13 -0.3
220,923 - HMPREF1078_RS15565 0.13 -0.2
220,923 - HMPREF1078_RS15565 0.13 -1.4
220,923 - HMPREF1078_RS15565 0.13 +0.5
220,923 - HMPREF1078_RS15565 0.13 +0.3
220,924 + HMPREF1078_RS15565 0.13 +0.4
220,979 - HMPREF1078_RS15565 0.18 -0.2
221,044 + HMPREF1078_RS15565 0.23 -0.1
221,044 + HMPREF1078_RS15565 0.23 -0.1
221,163 - HMPREF1078_RS15565 0.34 -0.3
221,229 - HMPREF1078_RS15565 0.39 -1.8
221,312 + HMPREF1078_RS15565 0.46 +0.8
221,313 - HMPREF1078_RS15565 0.46 +0.3
221,313 - HMPREF1078_RS15565 0.46 -0.4
221,313 - HMPREF1078_RS15565 0.46 -0.9

Or see this region's nucleotide sequence