Experiment: Lentilan from mushroom 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13000 and HMPREF1078_RS13005 are separated by 30 nucleotides HMPREF1078_RS13005 and HMPREF1078_RS13010 are separated by 66 nucleotides
HMPREF1078_RS13000: HMPREF1078_RS13000 - 1-deoxy-D-xylulose-5-phosphate synthase, at 10,533 to 12,440
_RS13000
HMPREF1078_RS13005: HMPREF1078_RS13005 - Trk system potassium transporter TrkA, at 12,471 to 13,808
_RS13005
HMPREF1078_RS13010: HMPREF1078_RS13010 - TrkH family potassium uptake protein, at 13,875 to 15,329
_RS13010
Position (kb) 12
13
14 Strain fitness (log2 ratio) -1
0
1
2
3 at 12.441 kb on + strand at 12.441 kb on + strand at 12.441 kb on + strand at 12.441 kb on + strand at 12.441 kb on + strand at 12.442 kb on - strand at 12.443 kb on + strand at 12.443 kb on + strand at 12.449 kb on + strand at 12.451 kb on + strand at 12.455 kb on + strand at 12.461 kb on - strand at 12.465 kb on + strand at 12.466 kb on - strand at 12.502 kb on + strand at 12.611 kb on + strand, within HMPREF1078_RS13005 at 12.611 kb on + strand, within HMPREF1078_RS13005 at 12.611 kb on + strand, within HMPREF1078_RS13005 at 12.612 kb on - strand, within HMPREF1078_RS13005 at 12.731 kb on + strand, within HMPREF1078_RS13005 at 12.747 kb on - strand, within HMPREF1078_RS13005 at 13.169 kb on + strand, within HMPREF1078_RS13005 at 13.235 kb on - strand, within HMPREF1078_RS13005 at 13.244 kb on + strand, within HMPREF1078_RS13005 at 13.439 kb on + strand, within HMPREF1078_RS13005 at 13.468 kb on + strand, within HMPREF1078_RS13005 at 13.469 kb on - strand, within HMPREF1078_RS13005 at 13.784 kb on + strand at 13.802 kb on + strand at 13.802 kb on + strand at 13.871 kb on + strand at 13.872 kb on - strand at 13.874 kb on + strand at 13.894 kb on + strand at 13.966 kb on + strand at 14.036 kb on + strand, within HMPREF1078_RS13010 at 14.137 kb on + strand, within HMPREF1078_RS13010 at 14.149 kb on + strand, within HMPREF1078_RS13010 at 14.157 kb on + strand, within HMPREF1078_RS13010 at 14.158 kb on - strand, within HMPREF1078_RS13010 at 14.158 kb on - strand, within HMPREF1078_RS13010 at 14.160 kb on - strand, within HMPREF1078_RS13010 at 14.161 kb on + strand, within HMPREF1078_RS13010 at 14.181 kb on + strand, within HMPREF1078_RS13010 at 14.181 kb on + strand, within HMPREF1078_RS13010 at 14.439 kb on + strand, within HMPREF1078_RS13010 at 14.439 kb on + strand, within HMPREF1078_RS13010 at 14.463 kb on - strand, within HMPREF1078_RS13010 at 14.751 kb on + strand, within HMPREF1078_RS13010 at 14.752 kb on - strand, within HMPREF1078_RS13010
Per-strain Table
Position Strand Gene LocusTag Fraction Lentilan from mushroom 2.5 mg/mL (C) remove 12,441 + +1.1 12,441 + -1.2 12,441 + -0.3 12,441 + -0.8 12,441 + -0.2 12,442 - +1.6 12,443 + -0.4 12,443 + +0.5 12,449 + +0.8 12,451 + +0.2 12,455 + +0.0 12,461 - -0.1 12,465 + +0.8 12,466 - +0.5 12,502 + +1.7 12,611 + HMPREF1078_RS13005 0.10 +1.2 12,611 + HMPREF1078_RS13005 0.10 +0.9 12,611 + HMPREF1078_RS13005 0.10 +1.5 12,612 - HMPREF1078_RS13005 0.11 +1.1 12,731 + HMPREF1078_RS13005 0.19 -1.1 12,747 - HMPREF1078_RS13005 0.21 +3.2 13,169 + HMPREF1078_RS13005 0.52 +0.3 13,235 - HMPREF1078_RS13005 0.57 +1.6 13,244 + HMPREF1078_RS13005 0.58 +1.3 13,439 + HMPREF1078_RS13005 0.72 +2.0 13,468 + HMPREF1078_RS13005 0.75 +2.2 13,469 - HMPREF1078_RS13005 0.75 -1.2 13,784 + +0.2 13,802 + +0.9 13,802 + +1.5 13,871 + +0.8 13,872 - -0.7 13,874 + -0.5 13,894 + -0.5 13,966 + +1.3 14,036 + HMPREF1078_RS13010 0.11 -0.3 14,137 + HMPREF1078_RS13010 0.18 +0.3 14,149 + HMPREF1078_RS13010 0.19 -0.0 14,157 + HMPREF1078_RS13010 0.19 +1.2 14,158 - HMPREF1078_RS13010 0.19 +1.9 14,158 - HMPREF1078_RS13010 0.19 +0.9 14,160 - HMPREF1078_RS13010 0.20 +1.9 14,161 + HMPREF1078_RS13010 0.20 +0.9 14,181 + HMPREF1078_RS13010 0.21 +0.0 14,181 + HMPREF1078_RS13010 0.21 +1.9 14,439 + HMPREF1078_RS13010 0.39 +1.9 14,439 + HMPREF1078_RS13010 0.39 +0.7 14,463 - HMPREF1078_RS13010 0.40 -0.8 14,751 + HMPREF1078_RS13010 0.60 +1.2 14,752 - HMPREF1078_RS13010 0.60 -0.3
Or see this region's nucleotide sequence