Experiment: Xylan from corncob 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05720 and HMPREF1078_RS18220 are separated by 48 nucleotides HMPREF1078_RS18220 and HMPREF1078_RS19790 are separated by 16 nucleotides HMPREF1078_RS19790 and HMPREF1078_RS05735 are separated by 96 nucleotides HMPREF1078_RS05735 and HMPREF1078_RS05740 are separated by 5 nucleotides
HMPREF1078_RS05720: HMPREF1078_RS05720 - TonB-dependent receptor, at 455,251 to 458,472
_RS05720
HMPREF1078_RS18220: HMPREF1078_RS18220 - FecR domain-containing protein, at 458,521 to 459,261
_RS18220
HMPREF1078_RS19790: HMPREF1078_RS19790 - hypothetical protein, at 459,278 to 459,577
_RS19790
HMPREF1078_RS05735: HMPREF1078_RS05735 - RNA polymerase sigma-70 factor, at 459,674 to 460,288
_RS05735
HMPREF1078_RS05740: HMPREF1078_RS05740 - metallophosphoesterase, at 460,294 to 461,193
_RS05740
Position (kb) 459
460 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 458.327 kb on + strand at 458.327 kb on + strand at 458.328 kb on - strand at 458.328 kb on - strand at 458.333 kb on - strand at 458.356 kb on + strand at 458.357 kb on - strand at 458.416 kb on - strand at 458.472 kb on + strand at 458.473 kb on - strand at 458.502 kb on + strand at 458.532 kb on + strand at 458.532 kb on + strand at 458.533 kb on - strand at 458.537 kb on + strand at 458.537 kb on + strand at 458.542 kb on - strand at 458.733 kb on - strand, within HMPREF1078_RS18220 at 458.760 kb on + strand, within HMPREF1078_RS18220 at 458.861 kb on - strand, within HMPREF1078_RS18220 at 458.871 kb on + strand, within HMPREF1078_RS18220 at 458.885 kb on - strand, within HMPREF1078_RS18220 at 458.896 kb on - strand, within HMPREF1078_RS18220 at 458.915 kb on + strand, within HMPREF1078_RS18220 at 458.923 kb on + strand, within HMPREF1078_RS18220 at 458.923 kb on + strand, within HMPREF1078_RS18220 at 458.923 kb on + strand, within HMPREF1078_RS18220 at 458.950 kb on + strand, within HMPREF1078_RS18220 at 458.955 kb on + strand, within HMPREF1078_RS18220 at 458.956 kb on - strand, within HMPREF1078_RS18220 at 458.956 kb on - strand, within HMPREF1078_RS18220 at 458.956 kb on - strand, within HMPREF1078_RS18220 at 459.000 kb on + strand, within HMPREF1078_RS18220 at 459.001 kb on - strand, within HMPREF1078_RS18220 at 459.068 kb on + strand, within HMPREF1078_RS18220 at 459.068 kb on + strand, within HMPREF1078_RS18220 at 459.074 kb on - strand, within HMPREF1078_RS18220 at 459.097 kb on + strand, within HMPREF1078_RS18220 at 459.098 kb on - strand, within HMPREF1078_RS18220 at 459.098 kb on - strand, within HMPREF1078_RS18220 at 459.201 kb on + strand at 459.201 kb on + strand at 459.201 kb on + strand at 459.202 kb on - strand at 459.203 kb on + strand at 459.203 kb on + strand at 459.217 kb on + strand at 459.218 kb on - strand at 459.221 kb on - strand at 459.539 kb on + strand, within HMPREF1078_RS19790 at 459.558 kb on + strand at 459.591 kb on + strand at 459.600 kb on + strand at 459.600 kb on + strand at 459.706 kb on + strand at 459.708 kb on + strand at 459.708 kb on + strand at 459.708 kb on + strand at 459.709 kb on - strand at 459.727 kb on + strand at 459.755 kb on + strand, within HMPREF1078_RS05735 at 459.756 kb on - strand, within HMPREF1078_RS05735 at 459.767 kb on + strand, within HMPREF1078_RS05735 at 459.768 kb on - strand, within HMPREF1078_RS05735 at 459.768 kb on - strand, within HMPREF1078_RS05735 at 459.769 kb on + strand, within HMPREF1078_RS05735 at 459.855 kb on - strand, within HMPREF1078_RS05735 at 459.918 kb on + strand, within HMPREF1078_RS05735 at 459.918 kb on + strand, within HMPREF1078_RS05735 at 459.928 kb on + strand, within HMPREF1078_RS05735 at 459.928 kb on + strand, within HMPREF1078_RS05735 at 460.003 kb on + strand, within HMPREF1078_RS05735 at 460.134 kb on + strand, within HMPREF1078_RS05735 at 460.136 kb on + strand, within HMPREF1078_RS05735 at 460.137 kb on - strand, within HMPREF1078_RS05735 at 460.137 kb on - strand, within HMPREF1078_RS05735 at 460.140 kb on - strand, within HMPREF1078_RS05735 at 460.141 kb on + strand, within HMPREF1078_RS05735 at 460.142 kb on - strand, within HMPREF1078_RS05735 at 460.183 kb on - strand, within HMPREF1078_RS05735 at 460.204 kb on - strand, within HMPREF1078_RS05735 at 460.207 kb on + strand, within HMPREF1078_RS05735 at 460.208 kb on - strand, within HMPREF1078_RS05735 at 460.295 kb on + strand at 460.295 kb on + strand at 460.299 kb on + strand at 460.300 kb on - strand at 460.300 kb on - strand at 460.302 kb on + strand at 460.302 kb on + strand at 460.302 kb on + strand at 460.317 kb on + strand at 460.346 kb on + strand at 460.346 kb on + strand at 460.347 kb on - strand at 460.350 kb on + strand at 460.350 kb on + strand at 460.350 kb on + strand at 460.350 kb on + strand at 460.428 kb on + strand, within HMPREF1078_RS05740 at 460.428 kb on + strand, within HMPREF1078_RS05740 at 460.457 kb on + strand, within HMPREF1078_RS05740 at 460.495 kb on + strand, within HMPREF1078_RS05740 at 460.496 kb on - strand, within HMPREF1078_RS05740 at 460.496 kb on - strand, within HMPREF1078_RS05740 at 460.576 kb on - strand, within HMPREF1078_RS05740
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corncob 2.5 mg/mL (C) remove 458,327 + -1.7 458,327 + -1.7 458,328 - +0.7 458,328 - -1.9 458,333 - +1.0 458,356 + -1.0 458,357 - +0.3 458,416 - +1.5 458,472 + -1.3 458,473 - -0.2 458,502 + -0.2 458,532 + -0.5 458,532 + +0.1 458,533 - +0.4 458,537 + -0.5 458,537 + -0.9 458,542 - -0.6 458,733 - HMPREF1078_RS18220 0.29 -0.2 458,760 + HMPREF1078_RS18220 0.32 -0.4 458,861 - HMPREF1078_RS18220 0.46 -1.7 458,871 + HMPREF1078_RS18220 0.47 -0.3 458,885 - HMPREF1078_RS18220 0.49 -0.5 458,896 - HMPREF1078_RS18220 0.51 +1.1 458,915 + HMPREF1078_RS18220 0.53 -0.3 458,923 + HMPREF1078_RS18220 0.54 -2.1 458,923 + HMPREF1078_RS18220 0.54 +1.5 458,923 + HMPREF1078_RS18220 0.54 +1.9 458,950 + HMPREF1078_RS18220 0.58 +0.5 458,955 + HMPREF1078_RS18220 0.59 -0.1 458,956 - HMPREF1078_RS18220 0.59 +0.3 458,956 - HMPREF1078_RS18220 0.59 +1.8 458,956 - HMPREF1078_RS18220 0.59 +1.5 459,000 + HMPREF1078_RS18220 0.65 +0.9 459,001 - HMPREF1078_RS18220 0.65 -1.0 459,068 + HMPREF1078_RS18220 0.74 +1.2 459,068 + HMPREF1078_RS18220 0.74 +0.6 459,074 - HMPREF1078_RS18220 0.75 -0.4 459,097 + HMPREF1078_RS18220 0.78 +1.0 459,098 - HMPREF1078_RS18220 0.78 +1.0 459,098 - HMPREF1078_RS18220 0.78 -0.0 459,201 + +0.3 459,201 + -1.4 459,201 + -0.8 459,202 - +3.3 459,203 + -0.3 459,203 + -0.1 459,217 + -0.8 459,218 - +0.3 459,221 - -0.5 459,539 + HMPREF1078_RS19790 0.87 -1.3 459,558 + +0.6 459,591 + +0.2 459,600 + -0.2 459,600 + +0.1 459,706 + +0.3 459,708 + +0.8 459,708 + -0.1 459,708 + -0.6 459,709 - -1.4 459,727 + -0.8 459,755 + HMPREF1078_RS05735 0.13 -1.1 459,756 - HMPREF1078_RS05735 0.13 +2.3 459,767 + HMPREF1078_RS05735 0.15 +0.1 459,768 - HMPREF1078_RS05735 0.15 -0.2 459,768 - HMPREF1078_RS05735 0.15 +1.3 459,769 + HMPREF1078_RS05735 0.15 -0.1 459,855 - HMPREF1078_RS05735 0.29 +0.2 459,918 + HMPREF1078_RS05735 0.40 -0.2 459,918 + HMPREF1078_RS05735 0.40 -1.0 459,928 + HMPREF1078_RS05735 0.41 -0.5 459,928 + HMPREF1078_RS05735 0.41 -0.1 460,003 + HMPREF1078_RS05735 0.53 +0.0 460,134 + HMPREF1078_RS05735 0.75 -0.2 460,136 + HMPREF1078_RS05735 0.75 -0.6 460,137 - HMPREF1078_RS05735 0.75 -1.2 460,137 - HMPREF1078_RS05735 0.75 -0.2 460,140 - HMPREF1078_RS05735 0.76 -1.4 460,141 + HMPREF1078_RS05735 0.76 -0.3 460,142 - HMPREF1078_RS05735 0.76 -1.1 460,183 - HMPREF1078_RS05735 0.83 -0.2 460,204 - HMPREF1078_RS05735 0.86 -0.5 460,207 + HMPREF1078_RS05735 0.87 +0.3 460,208 - HMPREF1078_RS05735 0.87 -0.4 460,295 + -0.4 460,295 + +0.8 460,299 + -0.3 460,300 - +0.2 460,300 - -0.9 460,302 + +0.3 460,302 + +0.9 460,302 + -1.3 460,317 + +1.6 460,346 + -0.6 460,346 + -0.1 460,347 - +0.5 460,350 + -0.9 460,350 + +0.1 460,350 + -0.5 460,350 + -1.5 460,428 + HMPREF1078_RS05740 0.15 -1.3 460,428 + HMPREF1078_RS05740 0.15 +1.1 460,457 + HMPREF1078_RS05740 0.18 +0.1 460,495 + HMPREF1078_RS05740 0.22 +0.6 460,496 - HMPREF1078_RS05740 0.22 +0.3 460,496 - HMPREF1078_RS05740 0.22 +1.2 460,576 - HMPREF1078_RS05740 0.31 +1.0
Or see this region's nucleotide sequence