Experiment: Xylan from corncob 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS06800 and HMPREF1078_RS06805 are separated by 131 nucleotides HMPREF1078_RS06805 and HMPREF1078_RS06810 are separated by 128 nucleotides
HMPREF1078_RS06800: HMPREF1078_RS06800 - S9 family peptidase, at 763,236 to 765,437
_RS06800
HMPREF1078_RS06805: HMPREF1078_RS06805 - phosphoribosylamine--glycine ligase, at 765,569 to 766,840
_RS06805
HMPREF1078_RS06810: HMPREF1078_RS06810 - hypothetical protein, at 766,969 to 767,982
_RS06810
Position (kb) 765
766
767 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 764.763 kb on + strand, within HMPREF1078_RS06800 at 764.778 kb on + strand, within HMPREF1078_RS06800 at 764.778 kb on + strand, within HMPREF1078_RS06800 at 764.834 kb on - strand, within HMPREF1078_RS06800 at 764.850 kb on + strand, within HMPREF1078_RS06800 at 764.850 kb on + strand, within HMPREF1078_RS06800 at 764.851 kb on - strand, within HMPREF1078_RS06800 at 764.852 kb on + strand, within HMPREF1078_RS06800 at 764.868 kb on + strand, within HMPREF1078_RS06800 at 764.869 kb on - strand, within HMPREF1078_RS06800 at 764.932 kb on + strand, within HMPREF1078_RS06800 at 764.933 kb on - strand, within HMPREF1078_RS06800 at 765.003 kb on + strand, within HMPREF1078_RS06800 at 765.004 kb on - strand, within HMPREF1078_RS06800 at 765.043 kb on - strand, within HMPREF1078_RS06800 at 765.053 kb on + strand, within HMPREF1078_RS06800 at 765.053 kb on + strand, within HMPREF1078_RS06800 at 765.054 kb on - strand, within HMPREF1078_RS06800 at 765.143 kb on + strand, within HMPREF1078_RS06800 at 765.143 kb on + strand, within HMPREF1078_RS06800 at 765.147 kb on + strand, within HMPREF1078_RS06800 at 765.147 kb on + strand, within HMPREF1078_RS06800 at 765.148 kb on - strand, within HMPREF1078_RS06800 at 765.161 kb on + strand, within HMPREF1078_RS06800 at 765.162 kb on - strand, within HMPREF1078_RS06800 at 765.194 kb on + strand, within HMPREF1078_RS06800 at 765.195 kb on - strand, within HMPREF1078_RS06800 at 765.324 kb on - strand at 765.324 kb on - strand at 765.327 kb on + strand at 765.327 kb on + strand at 765.328 kb on - strand at 765.393 kb on + strand at 765.394 kb on - strand at 765.404 kb on - strand at 765.473 kb on - strand at 765.473 kb on - strand at 765.488 kb on - strand at 765.488 kb on - strand at 765.529 kb on - strand at 765.529 kb on - strand at 765.652 kb on - strand at 765.676 kb on + strand at 765.676 kb on + strand at 765.676 kb on + strand at 765.688 kb on - strand at 765.688 kb on - strand at 765.699 kb on + strand, within HMPREF1078_RS06805 at 765.700 kb on - strand, within HMPREF1078_RS06805 at 765.703 kb on + strand, within HMPREF1078_RS06805 at 765.704 kb on - strand, within HMPREF1078_RS06805 at 765.727 kb on + strand, within HMPREF1078_RS06805 at 765.728 kb on - strand, within HMPREF1078_RS06805 at 765.728 kb on - strand, within HMPREF1078_RS06805 at 765.771 kb on + strand, within HMPREF1078_RS06805 at 765.771 kb on + strand, within HMPREF1078_RS06805 at 765.772 kb on - strand, within HMPREF1078_RS06805 at 765.772 kb on - strand, within HMPREF1078_RS06805 at 765.803 kb on + strand, within HMPREF1078_RS06805 at 765.803 kb on + strand, within HMPREF1078_RS06805 at 765.803 kb on + strand, within HMPREF1078_RS06805 at 765.804 kb on - strand, within HMPREF1078_RS06805 at 765.804 kb on - strand, within HMPREF1078_RS06805 at 765.804 kb on - strand, within HMPREF1078_RS06805 at 765.804 kb on - strand, within HMPREF1078_RS06805 at 765.804 kb on - strand, within HMPREF1078_RS06805 at 765.838 kb on + strand, within HMPREF1078_RS06805 at 765.849 kb on + strand, within HMPREF1078_RS06805 at 765.850 kb on - strand, within HMPREF1078_RS06805 at 765.850 kb on - strand, within HMPREF1078_RS06805 at 765.940 kb on + strand, within HMPREF1078_RS06805 at 765.940 kb on + strand, within HMPREF1078_RS06805 at 765.940 kb on + strand, within HMPREF1078_RS06805 at 765.941 kb on - strand, within HMPREF1078_RS06805 at 766.004 kb on + strand, within HMPREF1078_RS06805 at 766.004 kb on + strand, within HMPREF1078_RS06805 at 766.004 kb on + strand, within HMPREF1078_RS06805 at 766.008 kb on + strand, within HMPREF1078_RS06805 at 766.091 kb on - strand, within HMPREF1078_RS06805 at 766.193 kb on + strand, within HMPREF1078_RS06805 at 766.193 kb on + strand, within HMPREF1078_RS06805 at 766.194 kb on - strand, within HMPREF1078_RS06805 at 766.194 kb on - strand, within HMPREF1078_RS06805 at 766.255 kb on + strand, within HMPREF1078_RS06805 at 766.306 kb on + strand, within HMPREF1078_RS06805 at 766.328 kb on - strand, within HMPREF1078_RS06805 at 766.373 kb on + strand, within HMPREF1078_RS06805 at 766.374 kb on - strand, within HMPREF1078_RS06805 at 766.374 kb on - strand, within HMPREF1078_RS06805 at 766.421 kb on - strand, within HMPREF1078_RS06805 at 766.434 kb on - strand, within HMPREF1078_RS06805 at 766.435 kb on + strand, within HMPREF1078_RS06805 at 766.540 kb on + strand, within HMPREF1078_RS06805 at 766.540 kb on + strand, within HMPREF1078_RS06805 at 766.540 kb on + strand, within HMPREF1078_RS06805 at 766.541 kb on - strand, within HMPREF1078_RS06805 at 766.570 kb on - strand, within HMPREF1078_RS06805 at 766.585 kb on - strand, within HMPREF1078_RS06805 at 766.607 kb on + strand, within HMPREF1078_RS06805 at 766.624 kb on + strand, within HMPREF1078_RS06805 at 766.852 kb on - strand at 766.863 kb on + strand at 766.875 kb on + strand at 766.981 kb on + strand at 766.981 kb on + strand at 766.981 kb on + strand at 766.982 kb on - strand at 766.982 kb on - strand at 766.991 kb on - strand at 767.049 kb on + strand at 767.049 kb on + strand at 767.049 kb on + strand at 767.050 kb on - strand at 767.071 kb on + strand, within HMPREF1078_RS06810 at 767.168 kb on - strand, within HMPREF1078_RS06810 at 767.169 kb on + strand, within HMPREF1078_RS06810 at 767.169 kb on + strand, within HMPREF1078_RS06810 at 767.170 kb on - strand, within HMPREF1078_RS06810 at 767.224 kb on + strand, within HMPREF1078_RS06810 at 767.224 kb on + strand, within HMPREF1078_RS06810 at 767.225 kb on - strand, within HMPREF1078_RS06810 at 767.228 kb on + strand, within HMPREF1078_RS06810 at 767.229 kb on - strand, within HMPREF1078_RS06810 at 767.229 kb on - strand, within HMPREF1078_RS06810 at 767.240 kb on + strand, within HMPREF1078_RS06810 at 767.272 kb on + strand, within HMPREF1078_RS06810 at 767.272 kb on + strand, within HMPREF1078_RS06810 at 767.273 kb on - strand, within HMPREF1078_RS06810 at 767.273 kb on - strand, within HMPREF1078_RS06810 at 767.290 kb on - strand, within HMPREF1078_RS06810 at 767.318 kb on - strand, within HMPREF1078_RS06810 at 767.374 kb on + strand, within HMPREF1078_RS06810 at 767.374 kb on + strand, within HMPREF1078_RS06810 at 767.375 kb on - strand, within HMPREF1078_RS06810 at 767.375 kb on - strand, within HMPREF1078_RS06810 at 767.375 kb on - strand, within HMPREF1078_RS06810 at 767.375 kb on - strand, within HMPREF1078_RS06810 at 767.404 kb on + strand, within HMPREF1078_RS06810 at 767.430 kb on - strand, within HMPREF1078_RS06810 at 767.535 kb on - strand, within HMPREF1078_RS06810 at 767.551 kb on + strand, within HMPREF1078_RS06810 at 767.551 kb on + strand, within HMPREF1078_RS06810 at 767.654 kb on + strand, within HMPREF1078_RS06810
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corncob 2.5 mg/mL (C) remove 764,763 + HMPREF1078_RS06800 0.69 +1.0 764,778 + HMPREF1078_RS06800 0.70 -0.9 764,778 + HMPREF1078_RS06800 0.70 -1.9 764,834 - HMPREF1078_RS06800 0.73 -5.4 764,850 + HMPREF1078_RS06800 0.73 -0.2 764,850 + HMPREF1078_RS06800 0.73 +0.7 764,851 - HMPREF1078_RS06800 0.73 -2.2 764,852 + HMPREF1078_RS06800 0.73 -0.8 764,868 + HMPREF1078_RS06800 0.74 +0.5 764,869 - HMPREF1078_RS06800 0.74 +0.1 764,932 + HMPREF1078_RS06800 0.77 -3.5 764,933 - HMPREF1078_RS06800 0.77 -3.0 765,003 + HMPREF1078_RS06800 0.80 +0.3 765,004 - HMPREF1078_RS06800 0.80 -3.6 765,043 - HMPREF1078_RS06800 0.82 -3.8 765,053 + HMPREF1078_RS06800 0.83 +0.4 765,053 + HMPREF1078_RS06800 0.83 -0.4 765,054 - HMPREF1078_RS06800 0.83 -6.1 765,143 + HMPREF1078_RS06800 0.87 +1.0 765,143 + HMPREF1078_RS06800 0.87 -1.1 765,147 + HMPREF1078_RS06800 0.87 +1.3 765,147 + HMPREF1078_RS06800 0.87 -1.0 765,148 - HMPREF1078_RS06800 0.87 -3.5 765,161 + HMPREF1078_RS06800 0.87 -1.1 765,162 - HMPREF1078_RS06800 0.87 -2.7 765,194 + HMPREF1078_RS06800 0.89 -0.3 765,195 - HMPREF1078_RS06800 0.89 -4.2 765,324 - -5.7 765,324 - -3.1 765,327 + -3.0 765,327 + +0.3 765,328 - -1.1 765,393 + -0.7 765,394 - -2.4 765,404 - -3.9 765,473 - -3.9 765,473 - -3.4 765,488 - +1.1 765,488 - -4.4 765,529 - -4.0 765,529 - -3.5 765,652 - -3.6 765,676 + -1.2 765,676 + -2.1 765,676 + -2.4 765,688 - -3.2 765,688 - -5.2 765,699 + HMPREF1078_RS06805 0.10 -1.5 765,700 - HMPREF1078_RS06805 0.10 -3.7 765,703 + HMPREF1078_RS06805 0.11 -0.1 765,704 - HMPREF1078_RS06805 0.11 -3.2 765,727 + HMPREF1078_RS06805 0.12 -2.4 765,728 - HMPREF1078_RS06805 0.12 -3.9 765,728 - HMPREF1078_RS06805 0.12 -2.5 765,771 + HMPREF1078_RS06805 0.16 -3.0 765,771 + HMPREF1078_RS06805 0.16 -1.8 765,772 - HMPREF1078_RS06805 0.16 -2.8 765,772 - HMPREF1078_RS06805 0.16 -3.0 765,803 + HMPREF1078_RS06805 0.18 -3.4 765,803 + HMPREF1078_RS06805 0.18 -2.6 765,803 + HMPREF1078_RS06805 0.18 -1.2 765,804 - HMPREF1078_RS06805 0.18 -2.6 765,804 - HMPREF1078_RS06805 0.18 -4.1 765,804 - HMPREF1078_RS06805 0.18 -2.9 765,804 - HMPREF1078_RS06805 0.18 -5.7 765,804 - HMPREF1078_RS06805 0.18 -4.1 765,838 + HMPREF1078_RS06805 0.21 -1.8 765,849 + HMPREF1078_RS06805 0.22 -2.6 765,850 - HMPREF1078_RS06805 0.22 -3.2 765,850 - HMPREF1078_RS06805 0.22 -2.4 765,940 + HMPREF1078_RS06805 0.29 -0.2 765,940 + HMPREF1078_RS06805 0.29 -2.4 765,940 + HMPREF1078_RS06805 0.29 -2.2 765,941 - HMPREF1078_RS06805 0.29 -3.8 766,004 + HMPREF1078_RS06805 0.34 -1.9 766,004 + HMPREF1078_RS06805 0.34 -4.0 766,004 + HMPREF1078_RS06805 0.34 -2.9 766,008 + HMPREF1078_RS06805 0.35 -4.0 766,091 - HMPREF1078_RS06805 0.41 -3.0 766,193 + HMPREF1078_RS06805 0.49 -3.5 766,193 + HMPREF1078_RS06805 0.49 -2.2 766,194 - HMPREF1078_RS06805 0.49 -2.5 766,194 - HMPREF1078_RS06805 0.49 +0.4 766,255 + HMPREF1078_RS06805 0.54 -1.5 766,306 + HMPREF1078_RS06805 0.58 -1.5 766,328 - HMPREF1078_RS06805 0.60 -3.7 766,373 + HMPREF1078_RS06805 0.63 -0.5 766,374 - HMPREF1078_RS06805 0.63 -5.2 766,374 - HMPREF1078_RS06805 0.63 -2.5 766,421 - HMPREF1078_RS06805 0.67 -1.8 766,434 - HMPREF1078_RS06805 0.68 -3.8 766,435 + HMPREF1078_RS06805 0.68 -2.1 766,540 + HMPREF1078_RS06805 0.76 -0.7 766,540 + HMPREF1078_RS06805 0.76 -3.8 766,540 + HMPREF1078_RS06805 0.76 -2.0 766,541 - HMPREF1078_RS06805 0.76 +0.4 766,570 - HMPREF1078_RS06805 0.79 -0.9 766,585 - HMPREF1078_RS06805 0.80 -3.6 766,607 + HMPREF1078_RS06805 0.82 -2.7 766,624 + HMPREF1078_RS06805 0.83 -4.4 766,852 - -1.7 766,863 + -0.4 766,875 + -1.0 766,981 + -2.4 766,981 + -3.9 766,981 + -1.6 766,982 - -4.4 766,982 - -0.7 766,991 - -1.6 767,049 + -2.9 767,049 + -3.3 767,049 + -0.0 767,050 - -2.9 767,071 + HMPREF1078_RS06810 0.10 -2.3 767,168 - HMPREF1078_RS06810 0.20 -3.8 767,169 + HMPREF1078_RS06810 0.20 -4.5 767,169 + HMPREF1078_RS06810 0.20 -4.5 767,170 - HMPREF1078_RS06810 0.20 -3.4 767,224 + HMPREF1078_RS06810 0.25 -3.1 767,224 + HMPREF1078_RS06810 0.25 -3.5 767,225 - HMPREF1078_RS06810 0.25 -2.5 767,228 + HMPREF1078_RS06810 0.26 -2.6 767,229 - HMPREF1078_RS06810 0.26 -3.9 767,229 - HMPREF1078_RS06810 0.26 -4.7 767,240 + HMPREF1078_RS06810 0.27 -4.0 767,272 + HMPREF1078_RS06810 0.30 -3.3 767,272 + HMPREF1078_RS06810 0.30 -3.7 767,273 - HMPREF1078_RS06810 0.30 -2.4 767,273 - HMPREF1078_RS06810 0.30 -0.5 767,290 - HMPREF1078_RS06810 0.32 -3.8 767,318 - HMPREF1078_RS06810 0.34 -1.5 767,374 + HMPREF1078_RS06810 0.40 -1.7 767,374 + HMPREF1078_RS06810 0.40 -2.3 767,375 - HMPREF1078_RS06810 0.40 -2.0 767,375 - HMPREF1078_RS06810 0.40 -4.7 767,375 - HMPREF1078_RS06810 0.40 -2.7 767,375 - HMPREF1078_RS06810 0.40 -1.1 767,404 + HMPREF1078_RS06810 0.43 -2.3 767,430 - HMPREF1078_RS06810 0.45 -1.8 767,535 - HMPREF1078_RS06810 0.56 -1.5 767,551 + HMPREF1078_RS06810 0.57 -2.1 767,551 + HMPREF1078_RS06810 0.57 -0.9 767,654 + HMPREF1078_RS06810 0.68 -3.4
Or see this region's nucleotide sequence