Experiment: Xylan from corncob 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS19795 and HMPREF1078_RS06205 are separated by 772 nucleotides HMPREF1078_RS06205 and HMPREF1078_RS06210 are separated by 134 nucleotides
HMPREF1078_RS19795: HMPREF1078_RS19795 - hypothetical protein, at 595,556 to 595,729
_RS19795
HMPREF1078_RS06205: HMPREF1078_RS06205 - ROK family transcriptional regulator, at 596,502 to 597,716
_RS06205
HMPREF1078_RS06210: HMPREF1078_RS06210 - dihydrodipicolinate synthase family protein, at 597,851 to 598,768
_RS06210
Position (kb) 596
597
598 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 595.622 kb on + strand, within HMPREF1078_RS19795 at 595.641 kb on + strand, within HMPREF1078_RS19795 at 595.641 kb on + strand, within HMPREF1078_RS19795 at 595.642 kb on - strand, within HMPREF1078_RS19795 at 595.642 kb on - strand, within HMPREF1078_RS19795 at 595.678 kb on + strand, within HMPREF1078_RS19795 at 595.693 kb on + strand, within HMPREF1078_RS19795 at 595.693 kb on + strand, within HMPREF1078_RS19795 at 595.693 kb on + strand, within HMPREF1078_RS19795 at 595.693 kb on + strand, within HMPREF1078_RS19795 at 595.693 kb on + strand, within HMPREF1078_RS19795 at 595.694 kb on - strand, within HMPREF1078_RS19795 at 595.694 kb on - strand, within HMPREF1078_RS19795 at 595.694 kb on - strand, within HMPREF1078_RS19795 at 595.728 kb on - strand at 595.755 kb on + strand at 595.755 kb on + strand at 595.775 kb on - strand at 595.775 kb on - strand at 595.790 kb on - strand at 595.798 kb on + strand at 595.804 kb on + strand at 595.864 kb on + strand at 595.864 kb on + strand at 595.865 kb on - strand at 595.865 kb on - strand at 595.867 kb on + strand at 595.868 kb on - strand at 595.868 kb on - strand at 595.868 kb on - strand at 596.224 kb on + strand at 596.225 kb on - strand at 596.240 kb on - strand at 596.259 kb on + strand at 596.259 kb on + strand at 596.260 kb on - strand at 596.260 kb on - strand at 596.315 kb on - strand at 596.323 kb on + strand at 596.328 kb on - strand at 596.333 kb on + strand at 596.333 kb on + strand at 596.334 kb on - strand at 596.334 kb on - strand at 596.334 kb on - strand at 596.345 kb on + strand at 596.346 kb on - strand at 596.411 kb on + strand at 596.412 kb on - strand at 596.439 kb on + strand at 596.440 kb on - strand at 596.440 kb on - strand at 596.485 kb on + strand at 596.487 kb on + strand at 596.490 kb on + strand at 596.490 kb on + strand at 596.495 kb on + strand at 596.508 kb on - strand at 596.534 kb on + strand at 596.574 kb on + strand at 596.575 kb on - strand at 596.577 kb on + strand at 596.577 kb on + strand at 596.577 kb on + strand at 596.577 kb on + strand at 596.577 kb on + strand at 596.577 kb on + strand at 596.577 kb on + strand at 596.577 kb on + strand at 596.577 kb on + strand at 596.577 kb on + strand at 596.578 kb on - strand at 596.578 kb on - strand at 596.579 kb on + strand at 596.579 kb on + strand at 596.634 kb on - strand, within HMPREF1078_RS06205 at 596.679 kb on + strand, within HMPREF1078_RS06205 at 596.680 kb on - strand, within HMPREF1078_RS06205 at 596.682 kb on - strand, within HMPREF1078_RS06205 at 596.733 kb on + strand, within HMPREF1078_RS06205 at 596.734 kb on - strand, within HMPREF1078_RS06205 at 596.734 kb on - strand, within HMPREF1078_RS06205 at 596.734 kb on - strand, within HMPREF1078_RS06205 at 596.734 kb on - strand, within HMPREF1078_RS06205 at 596.828 kb on - strand, within HMPREF1078_RS06205 at 596.865 kb on - strand, within HMPREF1078_RS06205 at 596.936 kb on + strand, within HMPREF1078_RS06205 at 596.937 kb on - strand, within HMPREF1078_RS06205 at 596.942 kb on - strand, within HMPREF1078_RS06205 at 596.942 kb on - strand, within HMPREF1078_RS06205 at 596.991 kb on + strand, within HMPREF1078_RS06205 at 596.991 kb on + strand, within HMPREF1078_RS06205 at 596.993 kb on + strand, within HMPREF1078_RS06205 at 596.993 kb on + strand, within HMPREF1078_RS06205 at 596.997 kb on + strand, within HMPREF1078_RS06205 at 596.997 kb on + strand, within HMPREF1078_RS06205 at 596.997 kb on + strand, within HMPREF1078_RS06205 at 597.009 kb on + strand, within HMPREF1078_RS06205 at 597.106 kb on - strand, within HMPREF1078_RS06205 at 597.107 kb on + strand, within HMPREF1078_RS06205 at 597.107 kb on + strand, within HMPREF1078_RS06205 at 597.107 kb on + strand, within HMPREF1078_RS06205 at 597.107 kb on + strand, within HMPREF1078_RS06205 at 597.108 kb on - strand, within HMPREF1078_RS06205 at 597.122 kb on - strand, within HMPREF1078_RS06205 at 597.172 kb on + strand, within HMPREF1078_RS06205 at 597.172 kb on + strand, within HMPREF1078_RS06205 at 597.172 kb on + strand, within HMPREF1078_RS06205 at 597.173 kb on - strand, within HMPREF1078_RS06205 at 597.173 kb on - strand, within HMPREF1078_RS06205 at 597.173 kb on - strand, within HMPREF1078_RS06205 at 597.176 kb on + strand, within HMPREF1078_RS06205 at 597.176 kb on + strand, within HMPREF1078_RS06205 at 597.177 kb on - strand, within HMPREF1078_RS06205 at 597.195 kb on + strand, within HMPREF1078_RS06205 at 597.262 kb on + strand, within HMPREF1078_RS06205 at 597.262 kb on + strand, within HMPREF1078_RS06205 at 597.263 kb on - strand, within HMPREF1078_RS06205 at 597.263 kb on - strand, within HMPREF1078_RS06205 at 597.263 kb on - strand, within HMPREF1078_RS06205 at 597.263 kb on - strand, within HMPREF1078_RS06205 at 597.263 kb on - strand, within HMPREF1078_RS06205 at 597.324 kb on - strand, within HMPREF1078_RS06205 at 597.332 kb on - strand, within HMPREF1078_RS06205 at 597.362 kb on - strand, within HMPREF1078_RS06205 at 597.436 kb on + strand, within HMPREF1078_RS06205 at 597.436 kb on + strand, within HMPREF1078_RS06205 at 597.436 kb on + strand, within HMPREF1078_RS06205 at 597.436 kb on + strand, within HMPREF1078_RS06205 at 597.436 kb on + strand, within HMPREF1078_RS06205 at 597.437 kb on - strand, within HMPREF1078_RS06205 at 597.437 kb on - strand, within HMPREF1078_RS06205 at 597.437 kb on - strand, within HMPREF1078_RS06205 at 597.437 kb on - strand, within HMPREF1078_RS06205 at 597.485 kb on + strand, within HMPREF1078_RS06205 at 597.486 kb on - strand, within HMPREF1078_RS06205 at 597.527 kb on - strand, within HMPREF1078_RS06205 at 597.548 kb on - strand, within HMPREF1078_RS06205 at 597.558 kb on + strand, within HMPREF1078_RS06205 at 597.558 kb on + strand, within HMPREF1078_RS06205 at 597.559 kb on - strand, within HMPREF1078_RS06205 at 597.559 kb on - strand, within HMPREF1078_RS06205 at 597.585 kb on - strand, within HMPREF1078_RS06205 at 597.644 kb on - strand at 597.644 kb on - strand at 597.689 kb on + strand at 597.690 kb on - strand at 597.707 kb on - strand at 597.707 kb on - strand at 597.734 kb on + strand at 597.772 kb on - strand at 597.804 kb on + strand at 597.826 kb on + strand at 597.870 kb on + strand at 597.871 kb on - strand at 597.896 kb on + strand at 597.897 kb on - strand at 597.913 kb on - strand at 597.935 kb on + strand at 597.935 kb on + strand at 597.977 kb on - strand, within HMPREF1078_RS06210 at 597.977 kb on - strand, within HMPREF1078_RS06210 at 598.003 kb on + strand, within HMPREF1078_RS06210 at 598.004 kb on - strand, within HMPREF1078_RS06210 at 598.004 kb on - strand, within HMPREF1078_RS06210 at 598.047 kb on + strand, within HMPREF1078_RS06210 at 598.048 kb on - strand, within HMPREF1078_RS06210 at 598.048 kb on - strand, within HMPREF1078_RS06210 at 598.081 kb on - strand, within HMPREF1078_RS06210 at 598.081 kb on - strand, within HMPREF1078_RS06210 at 598.086 kb on + strand, within HMPREF1078_RS06210 at 598.115 kb on - strand, within HMPREF1078_RS06210 at 598.253 kb on + strand, within HMPREF1078_RS06210 at 598.254 kb on - strand, within HMPREF1078_RS06210 at 598.256 kb on + strand, within HMPREF1078_RS06210 at 598.256 kb on + strand, within HMPREF1078_RS06210 at 598.256 kb on + strand, within HMPREF1078_RS06210 at 598.257 kb on - strand, within HMPREF1078_RS06210 at 598.257 kb on - strand, within HMPREF1078_RS06210 at 598.257 kb on - strand, within HMPREF1078_RS06210 at 598.352 kb on + strand, within HMPREF1078_RS06210 at 598.353 kb on - strand, within HMPREF1078_RS06210 at 598.354 kb on + strand, within HMPREF1078_RS06210 at 598.354 kb on + strand, within HMPREF1078_RS06210 at 598.354 kb on + strand, within HMPREF1078_RS06210 at 598.354 kb on + strand, within HMPREF1078_RS06210 at 598.354 kb on + strand, within HMPREF1078_RS06210 at 598.355 kb on - strand, within HMPREF1078_RS06210 at 598.355 kb on - strand, within HMPREF1078_RS06210 at 598.355 kb on - strand, within HMPREF1078_RS06210 at 598.355 kb on - strand, within HMPREF1078_RS06210 at 598.355 kb on - strand, within HMPREF1078_RS06210 at 598.358 kb on + strand, within HMPREF1078_RS06210 at 598.358 kb on + strand, within HMPREF1078_RS06210 at 598.358 kb on - strand, within HMPREF1078_RS06210 at 598.359 kb on - strand, within HMPREF1078_RS06210 at 598.359 kb on - strand, within HMPREF1078_RS06210 at 598.359 kb on - strand, within HMPREF1078_RS06210 at 598.359 kb on - strand, within HMPREF1078_RS06210 at 598.359 kb on - strand, within HMPREF1078_RS06210 at 598.359 kb on - strand, within HMPREF1078_RS06210 at 598.377 kb on - strand, within HMPREF1078_RS06210 at 598.392 kb on + strand, within HMPREF1078_RS06210 at 598.393 kb on - strand, within HMPREF1078_RS06210 at 598.396 kb on + strand, within HMPREF1078_RS06210 at 598.397 kb on - strand, within HMPREF1078_RS06210 at 598.414 kb on + strand, within HMPREF1078_RS06210
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corncob 2.5 mg/mL (C) remove 595,622 + HMPREF1078_RS19795 0.38 +0.7 595,641 + HMPREF1078_RS19795 0.49 -0.9 595,641 + HMPREF1078_RS19795 0.49 -0.8 595,642 - HMPREF1078_RS19795 0.49 -0.1 595,642 - HMPREF1078_RS19795 0.49 +0.9 595,678 + HMPREF1078_RS19795 0.70 -1.1 595,693 + HMPREF1078_RS19795 0.79 -0.1 595,693 + HMPREF1078_RS19795 0.79 -1.4 595,693 + HMPREF1078_RS19795 0.79 -1.3 595,693 + HMPREF1078_RS19795 0.79 +0.4 595,693 + HMPREF1078_RS19795 0.79 -1.1 595,694 - HMPREF1078_RS19795 0.79 +1.2 595,694 - HMPREF1078_RS19795 0.79 -0.1 595,694 - HMPREF1078_RS19795 0.79 +3.1 595,728 - +2.3 595,755 + +0.7 595,755 + -0.1 595,775 - -1.7 595,775 - +1.3 595,790 - -0.1 595,798 + +0.2 595,804 + -0.6 595,864 + +0.5 595,864 + -0.9 595,865 - +5.3 595,865 - +0.6 595,867 + +0.8 595,868 - -0.5 595,868 - -0.8 595,868 - +0.1 596,224 + -0.4 596,225 - -0.4 596,240 - +0.2 596,259 + +0.1 596,259 + +1.4 596,260 - -0.8 596,260 - -1.3 596,315 - -0.7 596,323 + -0.2 596,328 - +0.6 596,333 + +1.1 596,333 + +2.7 596,334 - -0.0 596,334 - +0.6 596,334 - +1.5 596,345 + +0.1 596,346 - -0.8 596,411 + -0.1 596,412 - -0.8 596,439 + +0.2 596,440 - -1.0 596,440 - -2.3 596,485 + -0.3 596,487 + -1.1 596,490 + +0.7 596,490 + -0.5 596,495 + +0.9 596,508 - -2.6 596,534 + -1.4 596,574 + -1.9 596,575 - -0.4 596,577 + -0.8 596,577 + +0.0 596,577 + -0.1 596,577 + +0.7 596,577 + -0.6 596,577 + -1.9 596,577 + -0.8 596,577 + -1.2 596,577 + -2.0 596,577 + -0.0 596,578 - -0.3 596,578 - -0.3 596,579 + -1.7 596,579 + -0.9 596,634 - HMPREF1078_RS06205 0.11 -1.2 596,679 + HMPREF1078_RS06205 0.15 -0.6 596,680 - HMPREF1078_RS06205 0.15 -1.2 596,682 - HMPREF1078_RS06205 0.15 -1.2 596,733 + HMPREF1078_RS06205 0.19 -0.9 596,734 - HMPREF1078_RS06205 0.19 -1.1 596,734 - HMPREF1078_RS06205 0.19 -1.3 596,734 - HMPREF1078_RS06205 0.19 -2.0 596,734 - HMPREF1078_RS06205 0.19 -0.2 596,828 - HMPREF1078_RS06205 0.27 -1.2 596,865 - HMPREF1078_RS06205 0.30 -1.9 596,936 + HMPREF1078_RS06205 0.36 -1.6 596,937 - HMPREF1078_RS06205 0.36 -0.8 596,942 - HMPREF1078_RS06205 0.36 -1.6 596,942 - HMPREF1078_RS06205 0.36 -1.1 596,991 + HMPREF1078_RS06205 0.40 -0.7 596,991 + HMPREF1078_RS06205 0.40 -0.1 596,993 + HMPREF1078_RS06205 0.40 -1.2 596,993 + HMPREF1078_RS06205 0.40 -0.8 596,997 + HMPREF1078_RS06205 0.41 -0.8 596,997 + HMPREF1078_RS06205 0.41 -0.6 596,997 + HMPREF1078_RS06205 0.41 -0.6 597,009 + HMPREF1078_RS06205 0.42 -4.4 597,106 - HMPREF1078_RS06205 0.50 -0.1 597,107 + HMPREF1078_RS06205 0.50 -1.5 597,107 + HMPREF1078_RS06205 0.50 -1.5 597,107 + HMPREF1078_RS06205 0.50 +0.2 597,107 + HMPREF1078_RS06205 0.50 -0.6 597,108 - HMPREF1078_RS06205 0.50 -1.6 597,122 - HMPREF1078_RS06205 0.51 -0.1 597,172 + HMPREF1078_RS06205 0.55 -2.0 597,172 + HMPREF1078_RS06205 0.55 -2.0 597,172 + HMPREF1078_RS06205 0.55 -1.1 597,173 - HMPREF1078_RS06205 0.55 -1.2 597,173 - HMPREF1078_RS06205 0.55 -1.8 597,173 - HMPREF1078_RS06205 0.55 -0.4 597,176 + HMPREF1078_RS06205 0.55 +0.0 597,176 + HMPREF1078_RS06205 0.55 -1.2 597,177 - HMPREF1078_RS06205 0.56 -2.2 597,195 + HMPREF1078_RS06205 0.57 -1.8 597,262 + HMPREF1078_RS06205 0.63 -0.7 597,262 + HMPREF1078_RS06205 0.63 -2.5 597,263 - HMPREF1078_RS06205 0.63 -1.8 597,263 - HMPREF1078_RS06205 0.63 +0.6 597,263 - HMPREF1078_RS06205 0.63 -0.4 597,263 - HMPREF1078_RS06205 0.63 -0.7 597,263 - HMPREF1078_RS06205 0.63 -2.3 597,324 - HMPREF1078_RS06205 0.68 -2.5 597,332 - HMPREF1078_RS06205 0.68 -0.2 597,362 - HMPREF1078_RS06205 0.71 -0.3 597,436 + HMPREF1078_RS06205 0.77 -1.1 597,436 + HMPREF1078_RS06205 0.77 -2.9 597,436 + HMPREF1078_RS06205 0.77 -0.1 597,436 + HMPREF1078_RS06205 0.77 -2.5 597,436 + HMPREF1078_RS06205 0.77 -1.5 597,437 - HMPREF1078_RS06205 0.77 -1.4 597,437 - HMPREF1078_RS06205 0.77 -0.2 597,437 - HMPREF1078_RS06205 0.77 -1.4 597,437 - HMPREF1078_RS06205 0.77 -1.4 597,485 + HMPREF1078_RS06205 0.81 -1.4 597,486 - HMPREF1078_RS06205 0.81 +0.4 597,527 - HMPREF1078_RS06205 0.84 -2.7 597,548 - HMPREF1078_RS06205 0.86 -0.4 597,558 + HMPREF1078_RS06205 0.87 -0.1 597,558 + HMPREF1078_RS06205 0.87 -2.1 597,559 - HMPREF1078_RS06205 0.87 +0.1 597,559 - HMPREF1078_RS06205 0.87 -2.4 597,585 - HMPREF1078_RS06205 0.89 -1.7 597,644 - +1.1 597,644 - -2.7 597,689 + -0.9 597,690 - -0.4 597,707 - -0.1 597,707 - +0.2 597,734 + -1.1 597,772 - +0.7 597,804 + -0.6 597,826 + -0.6 597,870 + +0.3 597,871 - +0.4 597,896 + -0.0 597,897 - +0.0 597,913 - -0.9 597,935 + -1.6 597,935 + +0.7 597,977 - HMPREF1078_RS06210 0.14 +0.1 597,977 - HMPREF1078_RS06210 0.14 +0.6 598,003 + HMPREF1078_RS06210 0.17 -0.6 598,004 - HMPREF1078_RS06210 0.17 -1.3 598,004 - HMPREF1078_RS06210 0.17 +0.1 598,047 + HMPREF1078_RS06210 0.21 -0.3 598,048 - HMPREF1078_RS06210 0.21 +0.8 598,048 - HMPREF1078_RS06210 0.21 +0.0 598,081 - HMPREF1078_RS06210 0.25 +0.4 598,081 - HMPREF1078_RS06210 0.25 -0.4 598,086 + HMPREF1078_RS06210 0.26 +1.6 598,115 - HMPREF1078_RS06210 0.29 +0.1 598,253 + HMPREF1078_RS06210 0.44 -0.5 598,254 - HMPREF1078_RS06210 0.44 +0.7 598,256 + HMPREF1078_RS06210 0.44 -1.3 598,256 + HMPREF1078_RS06210 0.44 -0.2 598,256 + HMPREF1078_RS06210 0.44 +0.6 598,257 - HMPREF1078_RS06210 0.44 +0.9 598,257 - HMPREF1078_RS06210 0.44 +0.2 598,257 - HMPREF1078_RS06210 0.44 -0.2 598,352 + HMPREF1078_RS06210 0.55 +0.5 598,353 - HMPREF1078_RS06210 0.55 -0.1 598,354 + HMPREF1078_RS06210 0.55 +1.1 598,354 + HMPREF1078_RS06210 0.55 -1.8 598,354 + HMPREF1078_RS06210 0.55 -1.7 598,354 + HMPREF1078_RS06210 0.55 +0.6 598,354 + HMPREF1078_RS06210 0.55 +0.7 598,355 - HMPREF1078_RS06210 0.55 -3.5 598,355 - HMPREF1078_RS06210 0.55 +0.5 598,355 - HMPREF1078_RS06210 0.55 +0.4 598,355 - HMPREF1078_RS06210 0.55 +0.5 598,355 - HMPREF1078_RS06210 0.55 +0.8 598,358 + HMPREF1078_RS06210 0.55 +0.2 598,358 + HMPREF1078_RS06210 0.55 +0.2 598,358 - HMPREF1078_RS06210 0.55 -0.2 598,359 - HMPREF1078_RS06210 0.55 +0.7 598,359 - HMPREF1078_RS06210 0.55 -0.3 598,359 - HMPREF1078_RS06210 0.55 +1.1 598,359 - HMPREF1078_RS06210 0.55 -1.2 598,359 - HMPREF1078_RS06210 0.55 -1.1 598,359 - HMPREF1078_RS06210 0.55 +0.2 598,377 - HMPREF1078_RS06210 0.57 -0.3 598,392 + HMPREF1078_RS06210 0.59 -0.3 598,393 - HMPREF1078_RS06210 0.59 -0.1 598,396 + HMPREF1078_RS06210 0.59 +1.3 598,397 - HMPREF1078_RS06210 0.59 +0.0 598,414 + HMPREF1078_RS06210 0.61 -0.4
Or see this region's nucleotide sequence