Experiment: Xylan from corncob 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05075 and HMPREF1078_RS05080 overlap by 35 nucleotides HMPREF1078_RS05080 and HMPREF1078_RS05085 are separated by 146 nucleotides HMPREF1078_RS05085 and HMPREF1078_RS05090 are separated by 163 nucleotides
HMPREF1078_RS05075: HMPREF1078_RS05075 - relaxase/mobilization nuclease domain-containing protein, at 277,157 to 278,077
_RS05075
HMPREF1078_RS05080: HMPREF1078_RS05080 - MobC family plasmid mobilization relaxosome protein, at 278,043 to 278,426
_RS05080
HMPREF1078_RS05085: HMPREF1078_RS05085 - toprim domain-containing protein, at 278,573 to 279,538
_RS05085
HMPREF1078_RS05090: HMPREF1078_RS05090 - AAA family ATPase, at 279,702 to 280,775
_RS05090
Position (kb) 278
279
280 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 277.578 kb on + strand, within HMPREF1078_RS05075 at 277.579 kb on - strand, within HMPREF1078_RS05075 at 277.673 kb on + strand, within HMPREF1078_RS05075 at 277.689 kb on + strand, within HMPREF1078_RS05075 at 277.690 kb on - strand, within HMPREF1078_RS05075 at 277.690 kb on - strand, within HMPREF1078_RS05075 at 277.694 kb on - strand, within HMPREF1078_RS05075 at 277.694 kb on - strand, within HMPREF1078_RS05075 at 277.694 kb on - strand, within HMPREF1078_RS05075 at 277.695 kb on - strand, within HMPREF1078_RS05075 at 277.822 kb on + strand, within HMPREF1078_RS05075 at 277.822 kb on + strand, within HMPREF1078_RS05075 at 277.823 kb on - strand, within HMPREF1078_RS05075 at 277.823 kb on - strand, within HMPREF1078_RS05075 at 277.825 kb on - strand, within HMPREF1078_RS05075 at 277.841 kb on + strand, within HMPREF1078_RS05075 at 277.898 kb on - strand, within HMPREF1078_RS05075 at 277.898 kb on - strand, within HMPREF1078_RS05075 at 277.943 kb on - strand, within HMPREF1078_RS05075 at 277.958 kb on + strand, within HMPREF1078_RS05075 at 278.017 kb on + strand at 278.018 kb on - strand at 278.028 kb on + strand at 278.028 kb on + strand at 278.029 kb on - strand at 278.091 kb on + strand, within HMPREF1078_RS05080 at 278.214 kb on - strand, within HMPREF1078_RS05080 at 278.279 kb on - strand, within HMPREF1078_RS05080 at 278.327 kb on - strand, within HMPREF1078_RS05080 at 278.329 kb on + strand, within HMPREF1078_RS05080 at 278.448 kb on - strand at 278.514 kb on + strand at 278.585 kb on - strand at 278.745 kb on + strand, within HMPREF1078_RS05085 at 278.755 kb on - strand, within HMPREF1078_RS05085 at 278.800 kb on + strand, within HMPREF1078_RS05085 at 278.818 kb on - strand, within HMPREF1078_RS05085 at 278.825 kb on + strand, within HMPREF1078_RS05085 at 278.826 kb on - strand, within HMPREF1078_RS05085 at 278.826 kb on - strand, within HMPREF1078_RS05085 at 278.874 kb on + strand, within HMPREF1078_RS05085 at 278.874 kb on + strand, within HMPREF1078_RS05085 at 278.875 kb on - strand, within HMPREF1078_RS05085 at 278.927 kb on - strand, within HMPREF1078_RS05085 at 278.940 kb on + strand, within HMPREF1078_RS05085 at 279.023 kb on - strand, within HMPREF1078_RS05085 at 279.124 kb on + strand, within HMPREF1078_RS05085 at 279.124 kb on + strand, within HMPREF1078_RS05085 at 279.124 kb on + strand, within HMPREF1078_RS05085 at 279.125 kb on - strand, within HMPREF1078_RS05085 at 279.125 kb on - strand, within HMPREF1078_RS05085 at 279.125 kb on - strand, within HMPREF1078_RS05085 at 279.148 kb on + strand, within HMPREF1078_RS05085 at 279.171 kb on + strand, within HMPREF1078_RS05085 at 279.195 kb on - strand, within HMPREF1078_RS05085 at 279.288 kb on - strand, within HMPREF1078_RS05085 at 279.296 kb on + strand, within HMPREF1078_RS05085 at 279.296 kb on + strand, within HMPREF1078_RS05085 at 279.443 kb on - strand at 279.449 kb on + strand at 279.485 kb on + strand at 279.485 kb on + strand at 279.491 kb on - strand at 279.604 kb on + strand at 279.604 kb on + strand at 279.604 kb on + strand at 279.604 kb on + strand at 279.605 kb on - strand at 279.605 kb on - strand at 279.607 kb on - strand at 279.607 kb on - strand at 279.619 kb on + strand at 279.670 kb on - strand at 279.670 kb on - strand at 279.671 kb on + strand at 279.671 kb on + strand at 279.672 kb on - strand at 279.672 kb on - strand at 279.673 kb on + strand at 279.673 kb on + strand at 279.673 kb on + strand at 279.674 kb on - strand at 279.674 kb on - strand at 279.675 kb on + strand at 279.676 kb on - strand at 279.724 kb on + strand at 279.780 kb on - strand at 279.812 kb on - strand, within HMPREF1078_RS05090 at 279.868 kb on - strand, within HMPREF1078_RS05090 at 279.966 kb on + strand, within HMPREF1078_RS05090 at 279.967 kb on - strand, within HMPREF1078_RS05090 at 279.971 kb on - strand, within HMPREF1078_RS05090 at 280.041 kb on + strand, within HMPREF1078_RS05090 at 280.041 kb on + strand, within HMPREF1078_RS05090 at 280.042 kb on - strand, within HMPREF1078_RS05090 at 280.042 kb on - strand, within HMPREF1078_RS05090 at 280.043 kb on + strand, within HMPREF1078_RS05090 at 280.044 kb on - strand, within HMPREF1078_RS05090 at 280.044 kb on - strand, within HMPREF1078_RS05090 at 280.056 kb on + strand, within HMPREF1078_RS05090 at 280.057 kb on - strand, within HMPREF1078_RS05090 at 280.151 kb on + strand, within HMPREF1078_RS05090 at 280.152 kb on - strand, within HMPREF1078_RS05090 at 280.188 kb on - strand, within HMPREF1078_RS05090 at 280.197 kb on - strand, within HMPREF1078_RS05090 at 280.197 kb on - strand, within HMPREF1078_RS05090 at 280.199 kb on - strand, within HMPREF1078_RS05090 at 280.199 kb on - strand, within HMPREF1078_RS05090 at 280.230 kb on + strand, within HMPREF1078_RS05090 at 280.230 kb on + strand, within HMPREF1078_RS05090 at 280.313 kb on + strand, within HMPREF1078_RS05090 at 280.314 kb on - strand, within HMPREF1078_RS05090 at 280.314 kb on - strand, within HMPREF1078_RS05090 at 280.325 kb on + strand, within HMPREF1078_RS05090 at 280.325 kb on + strand, within HMPREF1078_RS05090 at 280.325 kb on + strand, within HMPREF1078_RS05090 at 280.325 kb on + strand, within HMPREF1078_RS05090 at 280.326 kb on - strand, within HMPREF1078_RS05090 at 280.326 kb on - strand, within HMPREF1078_RS05090 at 280.326 kb on - strand, within HMPREF1078_RS05090 at 280.326 kb on - strand, within HMPREF1078_RS05090 at 280.326 kb on - strand, within HMPREF1078_RS05090 at 280.328 kb on - strand, within HMPREF1078_RS05090 at 280.330 kb on + strand, within HMPREF1078_RS05090 at 280.335 kb on + strand, within HMPREF1078_RS05090 at 280.335 kb on + strand, within HMPREF1078_RS05090 at 280.336 kb on - strand, within HMPREF1078_RS05090 at 280.336 kb on - strand, within HMPREF1078_RS05090 at 280.336 kb on - strand, within HMPREF1078_RS05090 at 280.431 kb on - strand, within HMPREF1078_RS05090 at 280.446 kb on - strand, within HMPREF1078_RS05090 at 280.456 kb on + strand, within HMPREF1078_RS05090 at 280.472 kb on + strand, within HMPREF1078_RS05090
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corncob 2.5 mg/mL (C) remove 277,578 + HMPREF1078_RS05075 0.46 -0.2 277,579 - HMPREF1078_RS05075 0.46 -0.1 277,673 + HMPREF1078_RS05075 0.56 -2.8 277,689 + HMPREF1078_RS05075 0.58 +0.7 277,690 - HMPREF1078_RS05075 0.58 -0.9 277,690 - HMPREF1078_RS05075 0.58 -0.9 277,694 - HMPREF1078_RS05075 0.58 +0.6 277,694 - HMPREF1078_RS05075 0.58 -1.1 277,694 - HMPREF1078_RS05075 0.58 -2.9 277,695 - HMPREF1078_RS05075 0.58 -0.9 277,822 + HMPREF1078_RS05075 0.72 -0.2 277,822 + HMPREF1078_RS05075 0.72 -0.1 277,823 - HMPREF1078_RS05075 0.72 -0.7 277,823 - HMPREF1078_RS05075 0.72 +0.9 277,825 - HMPREF1078_RS05075 0.73 -0.1 277,841 + HMPREF1078_RS05075 0.74 -0.6 277,898 - HMPREF1078_RS05075 0.80 -0.5 277,898 - HMPREF1078_RS05075 0.80 +0.1 277,943 - HMPREF1078_RS05075 0.85 -0.9 277,958 + HMPREF1078_RS05075 0.87 +0.1 278,017 + -0.7 278,018 - -3.2 278,028 + -0.4 278,028 + -1.1 278,029 - -3.5 278,091 + HMPREF1078_RS05080 0.12 -0.5 278,214 - HMPREF1078_RS05080 0.45 -0.7 278,279 - HMPREF1078_RS05080 0.61 -0.2 278,327 - HMPREF1078_RS05080 0.74 -0.5 278,329 + HMPREF1078_RS05080 0.74 +0.2 278,448 - -1.4 278,514 + +0.2 278,585 - -1.2 278,745 + HMPREF1078_RS05085 0.18 -0.7 278,755 - HMPREF1078_RS05085 0.19 -1.8 278,800 + HMPREF1078_RS05085 0.23 +1.0 278,818 - HMPREF1078_RS05085 0.25 -1.6 278,825 + HMPREF1078_RS05085 0.26 -1.2 278,826 - HMPREF1078_RS05085 0.26 -0.8 278,826 - HMPREF1078_RS05085 0.26 +0.7 278,874 + HMPREF1078_RS05085 0.31 -0.9 278,874 + HMPREF1078_RS05085 0.31 +0.6 278,875 - HMPREF1078_RS05085 0.31 -2.2 278,927 - HMPREF1078_RS05085 0.37 -0.8 278,940 + HMPREF1078_RS05085 0.38 +0.1 279,023 - HMPREF1078_RS05085 0.47 +0.6 279,124 + HMPREF1078_RS05085 0.57 +1.5 279,124 + HMPREF1078_RS05085 0.57 -0.6 279,124 + HMPREF1078_RS05085 0.57 -1.0 279,125 - HMPREF1078_RS05085 0.57 -0.8 279,125 - HMPREF1078_RS05085 0.57 -0.1 279,125 - HMPREF1078_RS05085 0.57 +0.8 279,148 + HMPREF1078_RS05085 0.60 +0.7 279,171 + HMPREF1078_RS05085 0.62 -2.4 279,195 - HMPREF1078_RS05085 0.64 +0.4 279,288 - HMPREF1078_RS05085 0.74 +0.4 279,296 + HMPREF1078_RS05085 0.75 +0.6 279,296 + HMPREF1078_RS05085 0.75 -1.5 279,443 - +1.0 279,449 + +0.1 279,485 + +0.1 279,485 + -2.4 279,491 - +0.8 279,604 + -0.9 279,604 + -0.3 279,604 + -0.2 279,604 + -0.1 279,605 - -0.6 279,605 - -0.2 279,607 - -0.9 279,607 - +0.0 279,619 + -0.7 279,670 - -0.2 279,670 - -0.6 279,671 + +1.2 279,671 + +0.7 279,672 - -1.0 279,672 - +0.4 279,673 + -0.8 279,673 + -0.7 279,673 + -0.2 279,674 - -2.6 279,674 - -1.4 279,675 + -0.7 279,676 - -0.3 279,724 + -0.7 279,780 - -0.4 279,812 - HMPREF1078_RS05090 0.10 +1.5 279,868 - HMPREF1078_RS05090 0.15 -1.6 279,966 + HMPREF1078_RS05090 0.25 +0.4 279,967 - HMPREF1078_RS05090 0.25 -0.7 279,971 - HMPREF1078_RS05090 0.25 -0.8 280,041 + HMPREF1078_RS05090 0.32 +0.1 280,041 + HMPREF1078_RS05090 0.32 -0.5 280,042 - HMPREF1078_RS05090 0.32 -0.4 280,042 - HMPREF1078_RS05090 0.32 +0.8 280,043 + HMPREF1078_RS05090 0.32 +0.7 280,044 - HMPREF1078_RS05090 0.32 -0.5 280,044 - HMPREF1078_RS05090 0.32 -1.2 280,056 + HMPREF1078_RS05090 0.33 -1.0 280,057 - HMPREF1078_RS05090 0.33 -0.4 280,151 + HMPREF1078_RS05090 0.42 -1.1 280,152 - HMPREF1078_RS05090 0.42 -0.1 280,188 - HMPREF1078_RS05090 0.45 +0.7 280,197 - HMPREF1078_RS05090 0.46 +0.3 280,197 - HMPREF1078_RS05090 0.46 +1.2 280,199 - HMPREF1078_RS05090 0.46 +0.1 280,199 - HMPREF1078_RS05090 0.46 -2.0 280,230 + HMPREF1078_RS05090 0.49 -1.0 280,230 + HMPREF1078_RS05090 0.49 -0.3 280,313 + HMPREF1078_RS05090 0.57 +1.2 280,314 - HMPREF1078_RS05090 0.57 -0.6 280,314 - HMPREF1078_RS05090 0.57 +0.9 280,325 + HMPREF1078_RS05090 0.58 +1.3 280,325 + HMPREF1078_RS05090 0.58 -0.4 280,325 + HMPREF1078_RS05090 0.58 -0.5 280,325 + HMPREF1078_RS05090 0.58 -0.3 280,326 - HMPREF1078_RS05090 0.58 -2.1 280,326 - HMPREF1078_RS05090 0.58 -1.8 280,326 - HMPREF1078_RS05090 0.58 +1.2 280,326 - HMPREF1078_RS05090 0.58 -1.3 280,326 - HMPREF1078_RS05090 0.58 -1.5 280,328 - HMPREF1078_RS05090 0.58 -0.8 280,330 + HMPREF1078_RS05090 0.58 +0.4 280,335 + HMPREF1078_RS05090 0.59 +0.5 280,335 + HMPREF1078_RS05090 0.59 -1.5 280,336 - HMPREF1078_RS05090 0.59 -0.3 280,336 - HMPREF1078_RS05090 0.59 -0.7 280,336 - HMPREF1078_RS05090 0.59 -0.8 280,431 - HMPREF1078_RS05090 0.68 -0.3 280,446 - HMPREF1078_RS05090 0.69 -0.7 280,456 + HMPREF1078_RS05090 0.70 -0.9 280,472 + HMPREF1078_RS05090 0.72 -1.4
Or see this region's nucleotide sequence