Experiment: Xylan from corncob 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02580 and HMPREF1078_RS02585 are separated by 366 nucleotides HMPREF1078_RS02585 and HMPREF1078_RS02590 overlap by 35 nucleotides
HMPREF1078_RS02580: HMPREF1078_RS02580 - TonB-dependent receptor, at 641,230 to 644,577
_RS02580
HMPREF1078_RS02585: HMPREF1078_RS02585 - type II toxin-antitoxin system RelE/ParE family toxin, at 644,944 to 645,291
_RS02585
HMPREF1078_RS02590: HMPREF1078_RS02590 - helix-turn-helix transcriptional regulator, at 645,257 to 645,562
_RS02590
Position (kb) 644
645
646 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 644.044 kb on - strand, within HMPREF1078_RS02580 at 644.050 kb on - strand, within HMPREF1078_RS02580 at 644.121 kb on + strand, within HMPREF1078_RS02580 at 644.122 kb on - strand, within HMPREF1078_RS02580 at 644.122 kb on - strand, within HMPREF1078_RS02580 at 644.164 kb on - strand, within HMPREF1078_RS02580 at 644.169 kb on - strand, within HMPREF1078_RS02580 at 644.203 kb on - strand, within HMPREF1078_RS02580 at 644.265 kb on - strand at 644.323 kb on - strand at 644.323 kb on - strand at 644.323 kb on - strand at 644.323 kb on - strand at 644.352 kb on + strand at 644.352 kb on + strand at 644.353 kb on - strand at 644.353 kb on - strand at 644.362 kb on - strand at 644.392 kb on + strand at 644.457 kb on + strand at 644.457 kb on + strand at 644.457 kb on + strand at 644.458 kb on - strand at 644.458 kb on - strand at 644.458 kb on - strand at 644.461 kb on + strand at 644.473 kb on - strand at 644.473 kb on - strand at 644.473 kb on - strand at 644.475 kb on + strand at 644.482 kb on + strand at 644.483 kb on - strand at 644.508 kb on + strand at 644.512 kb on + strand at 644.559 kb on + strand at 644.559 kb on + strand at 644.559 kb on + strand at 644.560 kb on - strand at 644.563 kb on + strand at 644.563 kb on + strand at 644.564 kb on - strand at 644.564 kb on - strand at 644.648 kb on + strand at 644.649 kb on - strand at 644.651 kb on - strand at 644.659 kb on + strand at 644.660 kb on - strand at 644.666 kb on - strand at 644.666 kb on - strand at 644.668 kb on - strand at 644.677 kb on - strand at 644.677 kb on - strand at 644.708 kb on + strand at 644.711 kb on - strand at 644.714 kb on + strand at 644.715 kb on - strand at 644.743 kb on + strand at 644.753 kb on - strand at 644.800 kb on - strand at 644.802 kb on + strand at 644.802 kb on + strand at 644.809 kb on - strand at 644.809 kb on - strand at 644.809 kb on - strand at 644.812 kb on - strand at 644.812 kb on - strand at 644.818 kb on - strand at 644.824 kb on + strand at 644.825 kb on - strand at 644.825 kb on - strand at 644.857 kb on + strand at 644.862 kb on + strand at 644.862 kb on + strand at 644.862 kb on + strand at 644.863 kb on - strand at 644.863 kb on - strand at 644.863 kb on - strand at 644.863 kb on - strand at 644.864 kb on + strand at 644.865 kb on - strand at 644.867 kb on + strand at 644.868 kb on - strand at 644.868 kb on - strand at 644.868 kb on - strand at 644.893 kb on + strand at 644.904 kb on + strand at 644.912 kb on + strand at 644.912 kb on + strand at 644.913 kb on - strand at 644.957 kb on + strand at 644.960 kb on + strand at 644.961 kb on - strand at 644.965 kb on + strand at 644.974 kb on + strand at 644.974 kb on + strand at 645.028 kb on + strand, within HMPREF1078_RS02585 at 645.028 kb on + strand, within HMPREF1078_RS02585 at 645.032 kb on + strand, within HMPREF1078_RS02585 at 645.062 kb on + strand, within HMPREF1078_RS02585 at 645.077 kb on + strand, within HMPREF1078_RS02585 at 645.078 kb on - strand, within HMPREF1078_RS02585 at 645.098 kb on + strand, within HMPREF1078_RS02585 at 645.107 kb on + strand, within HMPREF1078_RS02585 at 645.107 kb on + strand, within HMPREF1078_RS02585 at 645.107 kb on + strand, within HMPREF1078_RS02585 at 645.107 kb on + strand, within HMPREF1078_RS02585 at 645.107 kb on + strand, within HMPREF1078_RS02585 at 645.118 kb on + strand, within HMPREF1078_RS02585 at 645.118 kb on + strand, within HMPREF1078_RS02585 at 645.253 kb on + strand, within HMPREF1078_RS02585 at 645.256 kb on + strand, within HMPREF1078_RS02585 at 645.257 kb on - strand at 645.411 kb on + strand, within HMPREF1078_RS02590 at 645.556 kb on + strand at 645.560 kb on + strand at 645.560 kb on + strand at 645.560 kb on + strand at 645.560 kb on + strand at 645.561 kb on - strand at 645.586 kb on + strand at 645.714 kb on - strand at 645.718 kb on + strand at 645.718 kb on + strand at 645.718 kb on + strand at 645.719 kb on - strand at 645.719 kb on - strand at 645.719 kb on - strand at 645.754 kb on + strand at 645.754 kb on + strand at 645.755 kb on - strand at 645.755 kb on - strand at 645.765 kb on + strand at 645.795 kb on + strand at 645.795 kb on + strand at 645.796 kb on - strand at 645.796 kb on - strand at 645.796 kb on - strand at 645.798 kb on + strand at 645.799 kb on - strand at 645.814 kb on + strand at 645.814 kb on + strand at 645.816 kb on + strand at 645.816 kb on + strand at 645.817 kb on - strand at 645.838 kb on + strand at 645.839 kb on - strand at 645.853 kb on - strand at 645.853 kb on - strand at 645.853 kb on - strand at 645.856 kb on + strand at 645.857 kb on - strand at 645.857 kb on - strand at 645.901 kb on + strand at 645.902 kb on - strand at 645.902 kb on - strand at 645.904 kb on + strand at 645.904 kb on + strand at 645.904 kb on + strand at 645.905 kb on - strand at 645.908 kb on + strand at 645.908 kb on + strand at 645.920 kb on + strand at 645.932 kb on + strand at 645.933 kb on - strand at 645.945 kb on - strand at 645.945 kb on - strand at 645.953 kb on + strand at 645.954 kb on - strand at 645.959 kb on + strand at 645.960 kb on - strand at 645.960 kb on - strand at 645.963 kb on - strand at 645.963 kb on - strand at 645.963 kb on - strand at 645.963 kb on - strand at 645.963 kb on - strand at 645.963 kb on - strand at 645.974 kb on - strand at 645.981 kb on + strand at 645.998 kb on + strand at 646.075 kb on + strand at 646.084 kb on + strand at 646.084 kb on + strand at 646.089 kb on + strand at 646.089 kb on + strand at 646.089 kb on + strand at 646.089 kb on + strand at 646.089 kb on + strand at 646.090 kb on - strand at 646.099 kb on + strand at 646.099 kb on + strand at 646.099 kb on + strand at 646.099 kb on + strand at 646.100 kb on - strand at 646.100 kb on - strand at 646.103 kb on + strand at 646.103 kb on + strand at 646.103 kb on + strand at 646.104 kb on - strand at 646.104 kb on - strand at 646.104 kb on - strand at 646.104 kb on - strand at 646.130 kb on + strand at 646.231 kb on + strand at 646.231 kb on + strand at 646.231 kb on + strand at 646.231 kb on + strand at 646.232 kb on - strand at 646.232 kb on - strand at 646.232 kb on - strand at 646.232 kb on - strand at 646.232 kb on - strand at 646.232 kb on - strand at 646.232 kb on - strand at 646.232 kb on - strand at 646.232 kb on - strand at 646.232 kb on - strand at 646.232 kb on - strand at 646.232 kb on - strand at 646.237 kb on + strand at 646.253 kb on + strand at 646.253 kb on + strand at 646.253 kb on + strand at 646.253 kb on + strand at 646.254 kb on - strand at 646.254 kb on - strand at 646.254 kb on - strand at 646.254 kb on - strand at 646.254 kb on - strand at 646.255 kb on + strand at 646.255 kb on + strand at 646.256 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corncob 2.5 mg/mL (C) remove 644,044 - HMPREF1078_RS02580 0.84 -0.3 644,050 - HMPREF1078_RS02580 0.84 -0.5 644,121 + HMPREF1078_RS02580 0.86 -1.2 644,122 - HMPREF1078_RS02580 0.86 +0.4 644,122 - HMPREF1078_RS02580 0.86 -1.1 644,164 - HMPREF1078_RS02580 0.88 +0.5 644,169 - HMPREF1078_RS02580 0.88 -0.6 644,203 - HMPREF1078_RS02580 0.89 -0.3 644,265 - -0.5 644,323 - +1.7 644,323 - -0.3 644,323 - -0.3 644,323 - +0.5 644,352 + -0.5 644,352 + +0.2 644,353 - +0.3 644,353 - +0.2 644,362 - -0.2 644,392 + -0.2 644,457 + +0.4 644,457 + +1.5 644,457 + -0.2 644,458 - +0.8 644,458 - +0.5 644,458 - +0.1 644,461 + -1.0 644,473 - -1.2 644,473 - -1.0 644,473 - +0.0 644,475 + -0.2 644,482 + -0.5 644,483 - -0.7 644,508 + -0.1 644,512 + -0.1 644,559 + +2.4 644,559 + -0.5 644,559 + +1.1 644,560 - -1.1 644,563 + +1.2 644,563 + -0.9 644,564 - -1.9 644,564 - -0.9 644,648 + -0.2 644,649 - +1.3 644,651 - +0.4 644,659 + -1.9 644,660 - -0.6 644,666 - +0.5 644,666 - +1.1 644,668 - -0.9 644,677 - +0.6 644,677 - -1.4 644,708 + +2.6 644,711 - -2.0 644,714 + +0.3 644,715 - +0.0 644,743 + +0.7 644,753 - +1.2 644,800 - +0.2 644,802 + +0.4 644,802 + -1.1 644,809 - +0.9 644,809 - +0.1 644,809 - -0.3 644,812 - +1.1 644,812 - -0.1 644,818 - -0.2 644,824 + +0.0 644,825 - -1.6 644,825 - -0.6 644,857 + +0.7 644,862 + -1.5 644,862 + -0.7 644,862 + +0.1 644,863 - +0.7 644,863 - -1.9 644,863 - -0.3 644,863 - +3.0 644,864 + -0.0 644,865 - -0.7 644,867 + -1.3 644,868 - +0.6 644,868 - -0.5 644,868 - +0.2 644,893 + +0.6 644,904 + -0.2 644,912 + +1.0 644,912 + -0.1 644,913 - +0.7 644,957 + +0.5 644,960 + -1.9 644,961 - -0.2 644,965 + -2.3 644,974 + +1.0 644,974 + +1.0 645,028 + HMPREF1078_RS02585 0.24 +0.0 645,028 + HMPREF1078_RS02585 0.24 -0.3 645,032 + HMPREF1078_RS02585 0.25 +0.8 645,062 + HMPREF1078_RS02585 0.34 +1.6 645,077 + HMPREF1078_RS02585 0.38 +1.9 645,078 - HMPREF1078_RS02585 0.39 +0.3 645,098 + HMPREF1078_RS02585 0.44 -1.8 645,107 + HMPREF1078_RS02585 0.47 +0.8 645,107 + HMPREF1078_RS02585 0.47 +0.4 645,107 + HMPREF1078_RS02585 0.47 +0.6 645,107 + HMPREF1078_RS02585 0.47 +0.1 645,107 + HMPREF1078_RS02585 0.47 -0.0 645,118 + HMPREF1078_RS02585 0.50 +1.1 645,118 + HMPREF1078_RS02585 0.50 +0.7 645,253 + HMPREF1078_RS02585 0.89 +1.5 645,256 + HMPREF1078_RS02585 0.90 -0.8 645,257 - -1.6 645,411 + HMPREF1078_RS02590 0.50 +1.0 645,556 + +0.3 645,560 + +0.8 645,560 + -1.3 645,560 + -0.9 645,560 + -0.9 645,561 - +1.2 645,586 + +2.1 645,714 - +0.3 645,718 + -0.6 645,718 + -0.7 645,718 + -0.1 645,719 - +0.0 645,719 - +1.1 645,719 - -0.9 645,754 + +0.6 645,754 + -1.0 645,755 - +0.7 645,755 - -0.4 645,765 + -1.6 645,795 + +1.0 645,795 + -2.3 645,796 - +0.4 645,796 - +0.8 645,796 - +1.4 645,798 + +1.5 645,799 - +1.0 645,814 + +0.0 645,814 + +1.2 645,816 + +0.1 645,816 + -0.5 645,817 - -0.0 645,838 + -0.1 645,839 - +0.8 645,853 - +0.7 645,853 - -1.1 645,853 - +0.1 645,856 + +0.6 645,857 - +0.9 645,857 - -0.1 645,901 + +1.7 645,902 - +0.5 645,902 - +0.4 645,904 + -1.9 645,904 + +0.7 645,904 + +0.3 645,905 - -0.6 645,908 + +0.4 645,908 + +1.1 645,920 + -0.9 645,932 + -0.5 645,933 - -0.5 645,945 - -0.0 645,945 - +0.7 645,953 + +0.8 645,954 - -0.3 645,959 + -1.7 645,960 - +0.1 645,960 - -1.1 645,963 - -0.5 645,963 - -0.4 645,963 - -1.3 645,963 - -0.4 645,963 - -1.7 645,963 - -0.2 645,974 - +0.3 645,981 + -0.2 645,998 + -0.5 646,075 + -0.1 646,084 + -0.2 646,084 + -0.2 646,089 + -0.1 646,089 + -0.6 646,089 + +1.0 646,089 + +0.2 646,089 + +1.0 646,090 - -0.6 646,099 + -0.8 646,099 + -0.3 646,099 + -1.0 646,099 + -0.6 646,100 - +1.2 646,100 - +1.0 646,103 + +0.9 646,103 + -0.9 646,103 + -0.2 646,104 - +2.1 646,104 - -0.3 646,104 - +0.7 646,104 - -1.0 646,130 + +0.4 646,231 + -1.7 646,231 + -0.9 646,231 + -0.9 646,231 + +1.3 646,232 - -0.7 646,232 - +0.7 646,232 - +1.6 646,232 - -0.6 646,232 - -1.1 646,232 - +0.6 646,232 - +0.3 646,232 - +0.0 646,232 - -0.2 646,232 - -2.5 646,232 - -1.4 646,232 - +1.4 646,237 + -0.7 646,253 + +1.7 646,253 + -1.0 646,253 + -0.7 646,253 + +1.4 646,254 - +0.2 646,254 - +0.4 646,254 - +2.3 646,254 - +1.0 646,254 - +1.0 646,255 + +1.0 646,255 + +0.0 646,256 - +0.6
Or see this region's nucleotide sequence