Experiment: Xylan from corncob 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00440 and HMPREF1078_RS00445 are separated by 225 nucleotides HMPREF1078_RS00445 and HMPREF1078_RS00450 are separated by 6 nucleotides HMPREF1078_RS00450 and HMPREF1078_RS00455 are separated by 40 nucleotides
HMPREF1078_RS00440: HMPREF1078_RS00440 - potassium transporter TrkG, at 100,800 to 102,620
_RS00440
HMPREF1078_RS00445: HMPREF1078_RS00445 - NUDIX domain-containing protein, at 102,846 to 103,586
_RS00445
HMPREF1078_RS00450: HMPREF1078_RS00450 - FGGY family carbohydrate kinase, at 103,593 to 105,080
_RS00450
HMPREF1078_RS00455: HMPREF1078_RS00455 - xylose isomerase, at 105,121 to 106,449
_RS00455
Position (kb) 103
104
105
106 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 102.603 kb on + strand at 102.603 kb on + strand at 102.603 kb on + strand at 102.603 kb on + strand at 102.604 kb on - strand at 102.620 kb on + strand at 102.620 kb on + strand at 102.623 kb on + strand at 102.624 kb on - strand at 102.654 kb on + strand at 102.655 kb on - strand at 102.688 kb on - strand at 102.734 kb on - strand at 102.743 kb on + strand at 102.775 kb on + strand at 102.793 kb on - strand at 102.815 kb on + strand at 102.818 kb on - strand at 102.843 kb on - strand at 102.843 kb on - strand at 102.863 kb on + strand at 102.863 kb on + strand at 102.864 kb on - strand at 102.966 kb on - strand, within HMPREF1078_RS00445 at 102.982 kb on - strand, within HMPREF1078_RS00445 at 103.005 kb on + strand, within HMPREF1078_RS00445 at 103.006 kb on - strand, within HMPREF1078_RS00445 at 103.121 kb on + strand, within HMPREF1078_RS00445 at 103.122 kb on - strand, within HMPREF1078_RS00445 at 103.122 kb on - strand, within HMPREF1078_RS00445 at 103.188 kb on + strand, within HMPREF1078_RS00445 at 103.203 kb on - strand, within HMPREF1078_RS00445 at 103.247 kb on + strand, within HMPREF1078_RS00445 at 103.247 kb on + strand, within HMPREF1078_RS00445 at 103.248 kb on - strand, within HMPREF1078_RS00445 at 103.324 kb on + strand, within HMPREF1078_RS00445 at 103.389 kb on + strand, within HMPREF1078_RS00445 at 103.390 kb on - strand, within HMPREF1078_RS00445 at 103.390 kb on - strand, within HMPREF1078_RS00445 at 103.420 kb on - strand, within HMPREF1078_RS00445 at 103.420 kb on - strand, within HMPREF1078_RS00445 at 103.424 kb on + strand, within HMPREF1078_RS00445 at 103.425 kb on - strand, within HMPREF1078_RS00445 at 103.433 kb on - strand, within HMPREF1078_RS00445 at 103.433 kb on - strand, within HMPREF1078_RS00445 at 103.433 kb on - strand, within HMPREF1078_RS00445 at 103.438 kb on + strand, within HMPREF1078_RS00445 at 103.438 kb on + strand, within HMPREF1078_RS00445 at 103.438 kb on + strand, within HMPREF1078_RS00445 at 103.438 kb on + strand, within HMPREF1078_RS00445 at 103.439 kb on - strand, within HMPREF1078_RS00445 at 103.474 kb on - strand, within HMPREF1078_RS00445 at 103.552 kb on - strand at 103.554 kb on - strand at 103.582 kb on + strand at 103.583 kb on - strand at 103.583 kb on - strand at 103.587 kb on + strand at 103.587 kb on + strand at 103.588 kb on - strand at 103.588 kb on - strand at 103.590 kb on - strand at 103.590 kb on - strand at 103.590 kb on - strand at 103.592 kb on + strand at 103.593 kb on - strand at 103.593 kb on - strand at 103.593 kb on - strand at 103.593 kb on - strand at 103.603 kb on + strand at 103.604 kb on - strand at 103.615 kb on + strand at 103.655 kb on + strand at 103.758 kb on + strand, within HMPREF1078_RS00450 at 103.759 kb on - strand, within HMPREF1078_RS00450 at 103.836 kb on + strand, within HMPREF1078_RS00450 at 103.837 kb on - strand, within HMPREF1078_RS00450 at 103.855 kb on + strand, within HMPREF1078_RS00450 at 103.856 kb on - strand, within HMPREF1078_RS00450 at 103.856 kb on - strand, within HMPREF1078_RS00450 at 103.998 kb on - strand, within HMPREF1078_RS00450 at 104.029 kb on - strand, within HMPREF1078_RS00450 at 104.041 kb on + strand, within HMPREF1078_RS00450 at 104.081 kb on + strand, within HMPREF1078_RS00450 at 104.082 kb on - strand, within HMPREF1078_RS00450 at 104.105 kb on + strand, within HMPREF1078_RS00450 at 104.163 kb on - strand, within HMPREF1078_RS00450 at 104.366 kb on - strand, within HMPREF1078_RS00450 at 104.398 kb on - strand, within HMPREF1078_RS00450 at 104.422 kb on - strand, within HMPREF1078_RS00450 at 104.444 kb on + strand, within HMPREF1078_RS00450 at 104.445 kb on - strand, within HMPREF1078_RS00450 at 104.501 kb on + strand, within HMPREF1078_RS00450 at 104.501 kb on + strand, within HMPREF1078_RS00450 at 104.558 kb on + strand, within HMPREF1078_RS00450 at 104.559 kb on - strand, within HMPREF1078_RS00450 at 104.560 kb on + strand, within HMPREF1078_RS00450 at 104.566 kb on - strand, within HMPREF1078_RS00450 at 104.651 kb on + strand, within HMPREF1078_RS00450 at 104.652 kb on - strand, within HMPREF1078_RS00450 at 104.652 kb on - strand, within HMPREF1078_RS00450 at 104.652 kb on - strand, within HMPREF1078_RS00450 at 104.709 kb on - strand, within HMPREF1078_RS00450 at 104.763 kb on + strand, within HMPREF1078_RS00450 at 104.763 kb on + strand, within HMPREF1078_RS00450 at 104.763 kb on + strand, within HMPREF1078_RS00450 at 104.763 kb on + strand, within HMPREF1078_RS00450 at 104.764 kb on - strand, within HMPREF1078_RS00450 at 104.837 kb on - strand, within HMPREF1078_RS00450 at 104.844 kb on - strand, within HMPREF1078_RS00450 at 104.844 kb on - strand, within HMPREF1078_RS00450 at 104.949 kb on + strand at 104.950 kb on - strand at 104.950 kb on - strand at 104.950 kb on - strand at 105.027 kb on + strand at 105.028 kb on - strand at 105.096 kb on + strand at 105.096 kb on + strand at 105.096 kb on + strand at 105.099 kb on - strand at 105.099 kb on - strand at 105.110 kb on + strand at 105.111 kb on - strand at 105.111 kb on - strand at 105.114 kb on + strand at 105.118 kb on - strand at 105.218 kb on - strand at 105.218 kb on - strand at 105.236 kb on + strand at 105.289 kb on - strand, within HMPREF1078_RS00455 at 105.289 kb on - strand, within HMPREF1078_RS00455 at 105.289 kb on - strand, within HMPREF1078_RS00455 at 105.293 kb on + strand, within HMPREF1078_RS00455 at 105.293 kb on + strand, within HMPREF1078_RS00455 at 105.293 kb on + strand, within HMPREF1078_RS00455 at 105.293 kb on + strand, within HMPREF1078_RS00455 at 105.293 kb on + strand, within HMPREF1078_RS00455 at 105.293 kb on + strand, within HMPREF1078_RS00455 at 105.293 kb on + strand, within HMPREF1078_RS00455 at 105.293 kb on + strand, within HMPREF1078_RS00455 at 105.293 kb on + strand, within HMPREF1078_RS00455 at 105.293 kb on + strand, within HMPREF1078_RS00455 at 105.293 kb on + strand, within HMPREF1078_RS00455 at 105.294 kb on - strand, within HMPREF1078_RS00455 at 105.406 kb on - strand, within HMPREF1078_RS00455 at 105.427 kb on + strand, within HMPREF1078_RS00455 at 105.427 kb on + strand, within HMPREF1078_RS00455 at 105.428 kb on - strand, within HMPREF1078_RS00455 at 105.430 kb on + strand, within HMPREF1078_RS00455 at 105.431 kb on - strand, within HMPREF1078_RS00455 at 105.587 kb on - strand, within HMPREF1078_RS00455 at 105.587 kb on - strand, within HMPREF1078_RS00455 at 105.588 kb on + strand, within HMPREF1078_RS00455 at 105.613 kb on + strand, within HMPREF1078_RS00455 at 105.691 kb on + strand, within HMPREF1078_RS00455 at 105.718 kb on + strand, within HMPREF1078_RS00455 at 105.741 kb on + strand, within HMPREF1078_RS00455 at 105.794 kb on - strand, within HMPREF1078_RS00455 at 105.865 kb on + strand, within HMPREF1078_RS00455 at 105.865 kb on + strand, within HMPREF1078_RS00455 at 105.866 kb on - strand, within HMPREF1078_RS00455 at 105.866 kb on - strand, within HMPREF1078_RS00455 at 105.908 kb on - strand, within HMPREF1078_RS00455 at 106.008 kb on + strand, within HMPREF1078_RS00455 at 106.042 kb on + strand, within HMPREF1078_RS00455 at 106.042 kb on + strand, within HMPREF1078_RS00455
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corncob 2.5 mg/mL (C) remove 102,603 + -0.2 102,603 + +0.1 102,603 + -0.5 102,603 + -1.2 102,604 - -0.7 102,620 + -0.3 102,620 + -0.2 102,623 + -1.4 102,624 - -0.3 102,654 + +0.4 102,655 - +0.9 102,688 - +0.6 102,734 - +0.4 102,743 + +0.8 102,775 + -1.2 102,793 - -2.1 102,815 + +0.3 102,818 - -1.3 102,843 - -1.8 102,843 - -1.1 102,863 + -1.7 102,863 + -1.7 102,864 - -2.5 102,966 - HMPREF1078_RS00445 0.16 -4.3 102,982 - HMPREF1078_RS00445 0.18 +0.1 103,005 + HMPREF1078_RS00445 0.21 -1.6 103,006 - HMPREF1078_RS00445 0.22 -0.9 103,121 + HMPREF1078_RS00445 0.37 +0.4 103,122 - HMPREF1078_RS00445 0.37 -1.1 103,122 - HMPREF1078_RS00445 0.37 -1.0 103,188 + HMPREF1078_RS00445 0.46 -0.6 103,203 - HMPREF1078_RS00445 0.48 -1.1 103,247 + HMPREF1078_RS00445 0.54 -2.6 103,247 + HMPREF1078_RS00445 0.54 -1.0 103,248 - HMPREF1078_RS00445 0.54 -1.7 103,324 + HMPREF1078_RS00445 0.65 +0.6 103,389 + HMPREF1078_RS00445 0.73 +0.2 103,390 - HMPREF1078_RS00445 0.73 -0.7 103,390 - HMPREF1078_RS00445 0.73 -1.1 103,420 - HMPREF1078_RS00445 0.77 -2.2 103,420 - HMPREF1078_RS00445 0.77 -0.9 103,424 + HMPREF1078_RS00445 0.78 -1.9 103,425 - HMPREF1078_RS00445 0.78 -1.3 103,433 - HMPREF1078_RS00445 0.79 +0.1 103,433 - HMPREF1078_RS00445 0.79 -2.7 103,433 - HMPREF1078_RS00445 0.79 -3.6 103,438 + HMPREF1078_RS00445 0.80 -0.7 103,438 + HMPREF1078_RS00445 0.80 -0.7 103,438 + HMPREF1078_RS00445 0.80 -1.4 103,438 + HMPREF1078_RS00445 0.80 -1.1 103,439 - HMPREF1078_RS00445 0.80 -2.4 103,474 - HMPREF1078_RS00445 0.85 -1.2 103,552 - -1.8 103,554 - -0.6 103,582 + -3.2 103,583 - -3.3 103,583 - -1.2 103,587 + -2.0 103,587 + -2.6 103,588 - +0.4 103,588 - -2.3 103,590 - +0.7 103,590 - +0.1 103,590 - -2.4 103,592 + -1.0 103,593 - -1.0 103,593 - -0.6 103,593 - -2.5 103,593 - -1.6 103,603 + -1.6 103,604 - -1.9 103,615 + -0.2 103,655 + -1.0 103,758 + HMPREF1078_RS00450 0.11 -0.5 103,759 - HMPREF1078_RS00450 0.11 -1.1 103,836 + HMPREF1078_RS00450 0.16 -2.4 103,837 - HMPREF1078_RS00450 0.16 -1.6 103,855 + HMPREF1078_RS00450 0.18 -0.3 103,856 - HMPREF1078_RS00450 0.18 +0.0 103,856 - HMPREF1078_RS00450 0.18 -0.6 103,998 - HMPREF1078_RS00450 0.27 -0.9 104,029 - HMPREF1078_RS00450 0.29 -3.7 104,041 + HMPREF1078_RS00450 0.30 -1.2 104,081 + HMPREF1078_RS00450 0.33 -1.6 104,082 - HMPREF1078_RS00450 0.33 -1.6 104,105 + HMPREF1078_RS00450 0.34 -1.6 104,163 - HMPREF1078_RS00450 0.38 -1.0 104,366 - HMPREF1078_RS00450 0.52 -3.1 104,398 - HMPREF1078_RS00450 0.54 -1.4 104,422 - HMPREF1078_RS00450 0.56 -2.7 104,444 + HMPREF1078_RS00450 0.57 -0.0 104,445 - HMPREF1078_RS00450 0.57 -1.6 104,501 + HMPREF1078_RS00450 0.61 -0.6 104,501 + HMPREF1078_RS00450 0.61 +0.9 104,558 + HMPREF1078_RS00450 0.65 -3.3 104,559 - HMPREF1078_RS00450 0.65 -0.2 104,560 + HMPREF1078_RS00450 0.65 -1.7 104,566 - HMPREF1078_RS00450 0.65 -1.6 104,651 + HMPREF1078_RS00450 0.71 -0.1 104,652 - HMPREF1078_RS00450 0.71 -1.3 104,652 - HMPREF1078_RS00450 0.71 -1.2 104,652 - HMPREF1078_RS00450 0.71 +0.4 104,709 - HMPREF1078_RS00450 0.75 -1.3 104,763 + HMPREF1078_RS00450 0.79 -2.2 104,763 + HMPREF1078_RS00450 0.79 -2.8 104,763 + HMPREF1078_RS00450 0.79 -1.1 104,763 + HMPREF1078_RS00450 0.79 -1.1 104,764 - HMPREF1078_RS00450 0.79 -1.9 104,837 - HMPREF1078_RS00450 0.84 -1.3 104,844 - HMPREF1078_RS00450 0.84 -2.3 104,844 - HMPREF1078_RS00450 0.84 +0.2 104,949 + -3.5 104,950 - -0.0 104,950 - -1.9 104,950 - -2.9 105,027 + -0.9 105,028 - -1.6 105,096 + -0.7 105,096 + +0.0 105,096 + -2.3 105,099 - -1.2 105,099 - -2.8 105,110 + +0.6 105,111 - +1.7 105,111 - +0.1 105,114 + -2.2 105,118 - -2.4 105,218 - +0.5 105,218 - -2.7 105,236 + -2.9 105,289 - HMPREF1078_RS00455 0.13 -1.2 105,289 - HMPREF1078_RS00455 0.13 -0.6 105,289 - HMPREF1078_RS00455 0.13 +0.4 105,293 + HMPREF1078_RS00455 0.13 -0.3 105,293 + HMPREF1078_RS00455 0.13 -3.7 105,293 + HMPREF1078_RS00455 0.13 -0.1 105,293 + HMPREF1078_RS00455 0.13 -1.8 105,293 + HMPREF1078_RS00455 0.13 -1.7 105,293 + HMPREF1078_RS00455 0.13 -0.7 105,293 + HMPREF1078_RS00455 0.13 -1.6 105,293 + HMPREF1078_RS00455 0.13 -3.2 105,293 + HMPREF1078_RS00455 0.13 -0.6 105,293 + HMPREF1078_RS00455 0.13 -1.7 105,293 + HMPREF1078_RS00455 0.13 -1.5 105,294 - HMPREF1078_RS00455 0.13 -1.5 105,406 - HMPREF1078_RS00455 0.21 -1.1 105,427 + HMPREF1078_RS00455 0.23 -2.4 105,427 + HMPREF1078_RS00455 0.23 -1.3 105,428 - HMPREF1078_RS00455 0.23 -1.5 105,430 + HMPREF1078_RS00455 0.23 -0.9 105,431 - HMPREF1078_RS00455 0.23 +0.2 105,587 - HMPREF1078_RS00455 0.35 -2.7 105,587 - HMPREF1078_RS00455 0.35 -1.7 105,588 + HMPREF1078_RS00455 0.35 -1.0 105,613 + HMPREF1078_RS00455 0.37 +0.7 105,691 + HMPREF1078_RS00455 0.43 -0.7 105,718 + HMPREF1078_RS00455 0.45 -2.6 105,741 + HMPREF1078_RS00455 0.47 -0.2 105,794 - HMPREF1078_RS00455 0.51 -1.7 105,865 + HMPREF1078_RS00455 0.56 -0.5 105,865 + HMPREF1078_RS00455 0.56 -1.8 105,866 - HMPREF1078_RS00455 0.56 -0.6 105,866 - HMPREF1078_RS00455 0.56 -3.0 105,908 - HMPREF1078_RS00455 0.59 -2.4 106,008 + HMPREF1078_RS00455 0.67 -2.6 106,042 + HMPREF1078_RS00455 0.69 -1.5 106,042 + HMPREF1078_RS00455 0.69 -0.8
Or see this region's nucleotide sequence