Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03810 and HMPREF1078_RS19515 overlap by 4 nucleotides HMPREF1078_RS19515 and HMPREF1078_RS18435 are separated by 436 nucleotides HMPREF1078_RS18435 and HMPREF1078_RS03820 are separated by 12 nucleotides
HMPREF1078_RS03810: HMPREF1078_RS03810 - amidoligase family protein, at 893,304 to 894,233
_RS03810
HMPREF1078_RS19515: HMPREF1078_RS19515 - hypothetical protein, at 894,230 to 894,463
_RS19515
HMPREF1078_RS18435: HMPREF1078_RS18435 - DNA-binding protein, at 894,900 to 895,055
_RS18435
HMPREF1078_RS03820: HMPREF1078_RS03820 - helix-turn-helix domain-containing protein, at 895,068 to 895,361
_RS03820
Position (kb) 894
895 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 893.268 kb on - strand at 893.275 kb on + strand at 893.276 kb on - strand at 893.281 kb on - strand at 893.281 kb on - strand at 893.281 kb on - strand at 893.295 kb on + strand at 893.295 kb on + strand at 893.295 kb on + strand at 893.354 kb on + strand at 893.355 kb on - strand at 893.424 kb on + strand, within HMPREF1078_RS03810 at 893.547 kb on + strand, within HMPREF1078_RS03810 at 893.624 kb on + strand, within HMPREF1078_RS03810 at 893.625 kb on - strand, within HMPREF1078_RS03810 at 893.625 kb on - strand, within HMPREF1078_RS03810 at 893.665 kb on + strand, within HMPREF1078_RS03810 at 893.797 kb on + strand, within HMPREF1078_RS03810 at 893.797 kb on + strand, within HMPREF1078_RS03810 at 893.798 kb on - strand, within HMPREF1078_RS03810 at 893.798 kb on - strand, within HMPREF1078_RS03810 at 893.803 kb on + strand, within HMPREF1078_RS03810 at 893.907 kb on - strand, within HMPREF1078_RS03810 at 893.911 kb on - strand, within HMPREF1078_RS03810 at 893.911 kb on - strand, within HMPREF1078_RS03810 at 893.911 kb on - strand, within HMPREF1078_RS03810 at 893.913 kb on + strand, within HMPREF1078_RS03810 at 893.914 kb on - strand, within HMPREF1078_RS03810 at 893.935 kb on + strand, within HMPREF1078_RS03810 at 893.936 kb on - strand, within HMPREF1078_RS03810 at 893.936 kb on - strand, within HMPREF1078_RS03810 at 894.024 kb on + strand, within HMPREF1078_RS03810 at 894.024 kb on + strand, within HMPREF1078_RS03810 at 894.110 kb on + strand, within HMPREF1078_RS03810 at 894.196 kb on + strand at 894.196 kb on + strand at 894.197 kb on - strand at 894.197 kb on - strand at 894.198 kb on + strand at 894.199 kb on - strand at 894.201 kb on + strand at 894.201 kb on + strand at 894.209 kb on - strand at 894.241 kb on + strand at 894.241 kb on + strand at 894.241 kb on + strand at 894.241 kb on + strand at 894.241 kb on + strand at 894.241 kb on + strand at 894.242 kb on - strand at 894.242 kb on - strand at 894.242 kb on - strand at 894.242 kb on - strand at 894.242 kb on - strand at 894.242 kb on - strand at 894.245 kb on + strand at 894.245 kb on + strand at 894.246 kb on - strand at 894.246 kb on - strand at 894.246 kb on - strand at 894.247 kb on + strand at 894.247 kb on + strand at 894.248 kb on - strand at 894.351 kb on - strand, within HMPREF1078_RS19515 at 894.351 kb on - strand, within HMPREF1078_RS19515 at 894.449 kb on + strand at 894.450 kb on - strand at 894.479 kb on - strand at 894.485 kb on - strand at 894.639 kb on - strand at 894.649 kb on - strand at 894.739 kb on + strand at 894.816 kb on + strand at 894.817 kb on - strand at 894.817 kb on - strand at 894.817 kb on - strand at 894.834 kb on - strand at 894.958 kb on - strand, within HMPREF1078_RS18435 at 894.994 kb on - strand, within HMPREF1078_RS18435 at 895.276 kb on - strand, within HMPREF1078_RS03820 at 895.303 kb on - strand, within HMPREF1078_RS03820 at 895.341 kb on + strand at 895.357 kb on + strand at 895.359 kb on + strand at 895.359 kb on + strand at 895.360 kb on - strand at 895.363 kb on - strand at 895.432 kb on - strand at 895.444 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 893,268 - -0.5 893,275 + +1.1 893,276 - -0.1 893,281 - -0.7 893,281 - +0.1 893,281 - -1.4 893,295 + -0.3 893,295 + -0.6 893,295 + +1.5 893,354 + -0.6 893,355 - -0.1 893,424 + HMPREF1078_RS03810 0.13 -1.9 893,547 + HMPREF1078_RS03810 0.26 -0.5 893,624 + HMPREF1078_RS03810 0.34 +1.1 893,625 - HMPREF1078_RS03810 0.35 -0.6 893,625 - HMPREF1078_RS03810 0.35 -0.8 893,665 + HMPREF1078_RS03810 0.39 +1.0 893,797 + HMPREF1078_RS03810 0.53 +1.1 893,797 + HMPREF1078_RS03810 0.53 +0.2 893,798 - HMPREF1078_RS03810 0.53 +0.3 893,798 - HMPREF1078_RS03810 0.53 +0.5 893,803 + HMPREF1078_RS03810 0.54 -1.2 893,907 - HMPREF1078_RS03810 0.65 -1.8 893,911 - HMPREF1078_RS03810 0.65 +1.0 893,911 - HMPREF1078_RS03810 0.65 +0.0 893,911 - HMPREF1078_RS03810 0.65 +0.2 893,913 + HMPREF1078_RS03810 0.65 +0.6 893,914 - HMPREF1078_RS03810 0.66 +0.7 893,935 + HMPREF1078_RS03810 0.68 -0.5 893,936 - HMPREF1078_RS03810 0.68 -0.5 893,936 - HMPREF1078_RS03810 0.68 -0.7 894,024 + HMPREF1078_RS03810 0.77 -0.5 894,024 + HMPREF1078_RS03810 0.77 +2.2 894,110 + HMPREF1078_RS03810 0.87 +0.6 894,196 + -3.3 894,196 + -0.4 894,197 - +1.8 894,197 - +1.6 894,198 + -0.3 894,199 - -0.1 894,201 + -0.5 894,201 + +0.8 894,209 - +0.3 894,241 + -2.1 894,241 + -1.9 894,241 + -0.4 894,241 + -0.9 894,241 + +2.1 894,241 + -1.7 894,242 - +0.2 894,242 - +0.5 894,242 - -0.8 894,242 - -1.5 894,242 - +1.0 894,242 - -0.7 894,245 + +2.3 894,245 + -0.4 894,246 - -0.4 894,246 - +0.2 894,246 - -0.6 894,247 + +0.4 894,247 + -2.3 894,248 - +0.5 894,351 - HMPREF1078_RS19515 0.52 -1.3 894,351 - HMPREF1078_RS19515 0.52 -1.8 894,449 + -0.9 894,450 - +0.6 894,479 - -0.3 894,485 - -0.0 894,639 - -2.5 894,649 - -0.7 894,739 + -2.6 894,816 + -2.1 894,817 - -0.5 894,817 - +0.5 894,817 - -1.8 894,834 - -0.1 894,958 - HMPREF1078_RS18435 0.37 -0.5 894,994 - HMPREF1078_RS18435 0.60 -1.8 895,276 - HMPREF1078_RS03820 0.71 -1.3 895,303 - HMPREF1078_RS03820 0.80 +1.8 895,341 + +1.2 895,357 + +1.6 895,359 + +0.3 895,359 + -2.6 895,360 - +0.2 895,363 - -1.1 895,432 - -0.5 895,444 + -0.0
Or see this region's nucleotide sequence