Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02820 and HMPREF1078_RS02825 are separated by 147 nucleotides HMPREF1078_RS02825 and HMPREF1078_RS19280 are separated by 208 nucleotides HMPREF1078_RS19280 and HMPREF1078_RS02835 are separated by 91 nucleotides HMPREF1078_RS02835 and HMPREF1078_RS02840 are separated by 27 nucleotides HMPREF1078_RS02840 and HMPREF1078_RS19285 are separated by 311 nucleotides HMPREF1078_RS19285 and HMPREF1078_RS02850 overlap by 15 nucleotides
HMPREF1078_RS02820: HMPREF1078_RS02820 - helix-turn-helix transcriptional regulator, at 684,384 to 684,785
_RS02820
HMPREF1078_RS02825: HMPREF1078_RS02825 - hypothetical protein, at 684,933 to 685,175
_RS02825
HMPREF1078_RS19280: HMPREF1078_RS19280 - hypothetical protein, at 685,384 to 685,623
_RS19280
HMPREF1078_RS02835: HMPREF1078_RS02835 - hypothetical protein, at 685,715 to 686,011
_RS02835
HMPREF1078_RS02840: HMPREF1078_RS02840 - tRNA-Ile, at 686,039 to 686,113
_RS02840
HMPREF1078_RS19285: HMPREF1078_RS19285 - hypothetical protein, at 686,425 to 686,583
_RS19285
HMPREF1078_RS02850: HMPREF1078_RS02850 - hypothetical protein, at 686,569 to 686,757
_RS02850
Position (kb) 685
686 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 684.808 kb on - strand at 684.808 kb on - strand at 684.872 kb on - strand at 684.880 kb on - strand at 684.887 kb on - strand at 684.913 kb on - strand at 684.928 kb on - strand at 684.928 kb on - strand at 684.928 kb on - strand at 684.932 kb on + strand at 684.933 kb on - strand at 684.933 kb on - strand at 684.986 kb on - strand, within HMPREF1078_RS02825 at 685.085 kb on - strand, within HMPREF1078_RS02825 at 685.155 kb on - strand at 685.155 kb on - strand at 685.244 kb on - strand at 685.265 kb on - strand at 685.353 kb on - strand at 685.353 kb on - strand at 685.353 kb on - strand at 685.353 kb on - strand at 685.356 kb on - strand at 685.386 kb on - strand at 685.386 kb on - strand at 685.410 kb on - strand, within HMPREF1078_RS19280 at 685.410 kb on - strand, within HMPREF1078_RS19280 at 685.443 kb on - strand, within HMPREF1078_RS19280 at 685.539 kb on - strand, within HMPREF1078_RS19280 at 685.592 kb on - strand, within HMPREF1078_RS19280 at 685.624 kb on - strand at 685.624 kb on - strand at 685.715 kb on - strand at 685.729 kb on - strand at 685.755 kb on - strand, within HMPREF1078_RS02835 at 685.829 kb on - strand, within HMPREF1078_RS02835 at 685.829 kb on - strand, within HMPREF1078_RS02835 at 685.873 kb on - strand, within HMPREF1078_RS02835 at 685.873 kb on - strand, within HMPREF1078_RS02835 at 685.912 kb on - strand, within HMPREF1078_RS02835 at 685.927 kb on - strand, within HMPREF1078_RS02835 at 686.121 kb on - strand at 686.221 kb on - strand at 686.293 kb on - strand at 686.354 kb on + strand at 686.355 kb on - strand at 686.355 kb on - strand at 686.355 kb on - strand at 686.356 kb on + strand at 686.357 kb on - strand at 686.376 kb on + strand at 686.411 kb on + strand at 686.411 kb on + strand at 686.425 kb on - strand at 686.466 kb on - strand, within HMPREF1078_RS19285 at 686.474 kb on + strand, within HMPREF1078_RS19285 at 686.475 kb on - strand, within HMPREF1078_RS19285 at 686.535 kb on + strand, within HMPREF1078_RS19285 at 686.535 kb on + strand, within HMPREF1078_RS19285 at 686.541 kb on - strand, within HMPREF1078_RS19285 at 686.612 kb on - strand, within HMPREF1078_RS02850 at 686.616 kb on - strand, within HMPREF1078_RS02850 at 686.616 kb on - strand, within HMPREF1078_RS02850 at 686.616 kb on - strand, within HMPREF1078_RS02850
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 684,808 - -0.1 684,808 - -2.3 684,872 - +0.1 684,880 - +0.8 684,887 - +0.6 684,913 - -3.2 684,928 - +1.1 684,928 - +1.1 684,928 - -0.6 684,932 + -0.6 684,933 - -1.8 684,933 - -1.3 684,986 - HMPREF1078_RS02825 0.22 -0.0 685,085 - HMPREF1078_RS02825 0.63 +1.0 685,155 - +1.2 685,155 - +3.5 685,244 - -0.1 685,265 - +0.0 685,353 - +0.1 685,353 - -2.2 685,353 - -2.9 685,353 - -1.2 685,356 - +0.8 685,386 - +1.1 685,386 - +1.2 685,410 - HMPREF1078_RS19280 0.11 -0.6 685,410 - HMPREF1078_RS19280 0.11 -0.3 685,443 - HMPREF1078_RS19280 0.25 -0.7 685,539 - HMPREF1078_RS19280 0.65 -1.0 685,592 - HMPREF1078_RS19280 0.87 -1.5 685,624 - +0.7 685,624 - +0.4 685,715 - -0.6 685,729 - +2.4 685,755 - HMPREF1078_RS02835 0.13 +1.7 685,829 - HMPREF1078_RS02835 0.38 -0.6 685,829 - HMPREF1078_RS02835 0.38 +1.0 685,873 - HMPREF1078_RS02835 0.53 -1.2 685,873 - HMPREF1078_RS02835 0.53 +0.3 685,912 - HMPREF1078_RS02835 0.66 -0.3 685,927 - HMPREF1078_RS02835 0.71 -0.5 686,121 - -1.1 686,221 - -0.4 686,293 - -1.4 686,354 + +1.5 686,355 - -0.4 686,355 - +0.4 686,355 - +1.3 686,356 + +0.5 686,357 - +0.5 686,376 + -1.9 686,411 + -1.3 686,411 + -0.1 686,425 - -2.6 686,466 - HMPREF1078_RS19285 0.26 +0.5 686,474 + HMPREF1078_RS19285 0.31 -0.9 686,475 - HMPREF1078_RS19285 0.31 -0.4 686,535 + HMPREF1078_RS19285 0.69 -0.0 686,535 + HMPREF1078_RS19285 0.69 -1.5 686,541 - HMPREF1078_RS19285 0.73 -1.6 686,612 - HMPREF1078_RS02850 0.23 -0.7 686,616 - HMPREF1078_RS02850 0.25 +0.5 686,616 - HMPREF1078_RS02850 0.25 -0.7 686,616 - HMPREF1078_RS02850 0.25 -0.7
Or see this region's nucleotide sequence