Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS17735

Experiment: Dextrin from potato starch 2.5 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dextrin from potato starch 2.5 mg/mL (C)
113,095	+		HMPREF1078_RS17725	0.66	+0.2
113,095	+		HMPREF1078_RS17725	0.66	-1.6
113,095	+		HMPREF1078_RS17725	0.66	+0.0
113,095	+		HMPREF1078_RS17725	0.66	+0.1
113,096	-		HMPREF1078_RS17725	0.66	+0.2
113,096	-		HMPREF1078_RS17725	0.66	+0.1
113,096	-		HMPREF1078_RS17725	0.66	+1.1
113,096	-		HMPREF1078_RS17725	0.66	-0.6
113,096	-		HMPREF1078_RS17725	0.66	-0.9
113,096	-		HMPREF1078_RS17725	0.66	+0.4
113,096	-		HMPREF1078_RS17725	0.66	+0.5
113,097	+		HMPREF1078_RS17725	0.66	-1.9
113,098	-		HMPREF1078_RS17725	0.66	+0.9
113,238	+				-0.3
113,239	-				-0.1
113,244	+				+0.2
113,244	+				-1.0
113,246	+				+1.4
113,246	+				-0.2
113,247	-				+1.1
113,247	-				-1.1
113,247	-				+0.7
113,257	+				-0.0
113,257	+				+1.0
113,257	+				+0.1
113,257	+				-2.5
113,260	+				+0.0
113,260	+				+0.9
113,261	-				-1.9
113,261	-				-1.0
113,263	-				-0.3
113,263	-				-1.7
113,268	+				-0.5
113,268	+				+0.5
113,269	-				+0.9
113,269	-				-0.3
113,269	-				-0.3
113,280	-				-0.7
113,317	-		HMPREF1078_RS17730	0.12	+0.7
113,379	+		HMPREF1078_RS17730	0.28	-0.9
113,423	+		HMPREF1078_RS17730	0.39	-0.3
113,424	-		HMPREF1078_RS17730	0.39	-2.1
113,445	+		HMPREF1078_RS17730	0.44	-0.4
113,445	+		HMPREF1078_RS17730	0.44	-0.1
113,446	-		HMPREF1078_RS17730	0.45	+0.2
113,446	-		HMPREF1078_RS17730	0.45	+1.3
113,446	-		HMPREF1078_RS17730	0.45	-0.3
113,483	-		HMPREF1078_RS17730	0.54	-1.5
113,491	-		HMPREF1078_RS17730	0.56	-0.6
113,491	-		HMPREF1078_RS17730	0.56	+0.5
113,492	+		HMPREF1078_RS17730	0.56	-0.1
113,492	+		HMPREF1078_RS17730	0.56	+0.1
113,520	+		HMPREF1078_RS17730	0.63	+0.7
113,520	+		HMPREF1078_RS17730	0.63	+0.3
113,580	+		HMPREF1078_RS17730	0.79	-1.2
113,580	+		HMPREF1078_RS17730	0.79	-0.6
113,581	-		HMPREF1078_RS17730	0.79	+1.5
113,581	-		HMPREF1078_RS17730	0.79	-0.1
113,581	-		HMPREF1078_RS17730	0.79	-1.6
113,581	-		HMPREF1078_RS17730	0.79	-0.3
113,581	-		HMPREF1078_RS17730	0.79	+1.2
113,584	+		HMPREF1078_RS17730	0.80	-0.6
113,584	+		HMPREF1078_RS17730	0.80	+0.4
113,700	+				-1.2
113,701	-				-0.9
113,701	-				+0.3
113,703	-				-1.3
113,759	+				+0.9
113,773	+				+0.0
113,782	+				-0.1
113,783	-				+0.0
113,783	-				-1.0
113,783	-				+0.0
113,803	+				+1.3
113,804	-				-0.3
113,804	-				+0.4
113,804	-				+0.9
113,846	-				+0.7
113,862	+				+0.3
113,862	+				+0.2
113,864	+				+1.2
113,865	-				-1.7
113,865	-				+0.1
113,935	-				+0.3
114,096	-		HMPREF1078_RS17735	0.29	+0.4
114,192	-		HMPREF1078_RS17735	0.42	+0.6
114,304	-		HMPREF1078_RS17735	0.57	+0.8
114,428	-		HMPREF1078_RS17735	0.74	-0.3
114,428	-		HMPREF1078_RS17735	0.74	-1.2
114,451	+		HMPREF1078_RS17735	0.77	+0.8
114,451	+		HMPREF1078_RS17735	0.77	+0.8
114,451	+		HMPREF1078_RS17735	0.77	+1.3
114,451	+		HMPREF1078_RS17735	0.77	+0.1
114,451	+		HMPREF1078_RS17735	0.77	+1.9
114,519	+		HMPREF1078_RS17735	0.86	+0.1
114,549	+				+0.6
114,549	+				-0.0
114,550	-				-0.7
114,550	-				-0.3
114,551	+				-0.3
114,564	+				-0.1
114,564	+				-0.3
114,564	+				+1.7
114,565	-				+0.4
114,565	-				-1.3
114,582	+				-0.3
114,632	+				+0.2
114,640	-				+0.6
114,640	-				+1.0
114,641	+				-0.1
114,643	+				+1.3
114,644	-				-0.0
114,644	-				-1.2
114,644	-				+0.6
114,644	-				-0.7
114,703	-				-0.6
114,719	+				+0.3
114,725	+				-0.6
114,725	+				-0.6
114,734	+				+0.4
114,735	-				+1.5
114,735	-				+1.7
114,760	+		HMPREF1078_RS17740	0.11	+0.9
114,786	-		HMPREF1078_RS17740	0.14	+0.2
114,786	-		HMPREF1078_RS17740	0.14	+0.3
114,804	+		HMPREF1078_RS17740	0.15	+1.1
114,805	-		HMPREF1078_RS17740	0.15	-1.5
114,806	+		HMPREF1078_RS17740	0.15	+0.4
114,806	+		HMPREF1078_RS17740	0.15	+0.7
114,807	-		HMPREF1078_RS17740	0.15	-1.2
114,837	-		HMPREF1078_RS17740	0.18	+1.1
114,874	+		HMPREF1078_RS17740	0.22	-0.5
114,919	-		HMPREF1078_RS17740	0.26	+1.1
114,920	+		HMPREF1078_RS17740	0.26	+0.7
114,969	-		HMPREF1078_RS17740	0.30	-0.2
115,016	+		HMPREF1078_RS17740	0.35	-1.2
115,016	+		HMPREF1078_RS17740	0.35	+0.8
115,105	+		HMPREF1078_RS17740	0.43	+1.6
115,105	+		HMPREF1078_RS17740	0.43	-0.6
115,106	-		HMPREF1078_RS17740	0.43	-0.8
115,121	-		HMPREF1078_RS17740	0.44	+2.5
115,148	-		HMPREF1078_RS17740	0.47	+0.2
115,160	+		HMPREF1078_RS17740	0.48	+0.8
115,241	+		HMPREF1078_RS17740	0.55	+0.7
115,241	+		HMPREF1078_RS17740	0.55	-0.0
115,241	+		HMPREF1078_RS17740	0.55	-2.2
115,243	+		HMPREF1078_RS17740	0.55	-0.9
115,244	-		HMPREF1078_RS17740	0.55	+1.1
115,251	-		HMPREF1078_RS17740	0.56	-0.0
115,294	+		HMPREF1078_RS17740	0.60	-0.1
115,294	+		HMPREF1078_RS17740	0.60	-0.4
115,328	-		HMPREF1078_RS17740	0.63	+0.1
115,329	+		HMPREF1078_RS17740	0.63	+2.6
115,330	-		HMPREF1078_RS17740	0.63	+0.2
115,330	-		HMPREF1078_RS17740	0.63	+0.3
115,349	+		HMPREF1078_RS17740	0.65	-0.5
115,448	-		HMPREF1078_RS17740	0.74	-0.6
115,448	-		HMPREF1078_RS17740	0.74	+1.3
115,495	+		HMPREF1078_RS17740	0.78	+0.1
115,495	+		HMPREF1078_RS17740	0.78	+0.7
115,506	-		HMPREF1078_RS17740	0.79	+0.5
115,540	-		HMPREF1078_RS17740	0.83	-3.2
115,597	+		HMPREF1078_RS17740	0.88	-0.9
115,598	-		HMPREF1078_RS17740	0.88	+1.4