Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS17680 and HMPREF1078_RS17685 are separated by 15 nucleotides HMPREF1078_RS17685 and HMPREF1078_RS17690 are separated by 4 nucleotides HMPREF1078_RS17690 and HMPREF1078_RS17695 are separated by 15 nucleotides
HMPREF1078_RS17680: HMPREF1078_RS17680 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 101,285 to 102,322
_RS17680
HMPREF1078_RS17685: HMPREF1078_RS17685 - bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase, at 102,338 to 102,853
_RS17685
HMPREF1078_RS17690: HMPREF1078_RS17690 - S4 domain-containing protein, at 102,858 to 103,463
_RS17690
HMPREF1078_RS17695: HMPREF1078_RS17695 - adenosylcobinamide-phosphate synthase CbiB, at 103,479 to 104,432
_RS17695
Position (kb) 102
103 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 101.411 kb on + strand, within HMPREF1078_RS17680 at 101.429 kb on + strand, within HMPREF1078_RS17680 at 101.429 kb on + strand, within HMPREF1078_RS17680 at 101.429 kb on + strand, within HMPREF1078_RS17680 at 101.430 kb on - strand, within HMPREF1078_RS17680 at 101.430 kb on - strand, within HMPREF1078_RS17680 at 101.430 kb on - strand, within HMPREF1078_RS17680 at 101.435 kb on - strand, within HMPREF1078_RS17680 at 101.441 kb on + strand, within HMPREF1078_RS17680 at 101.442 kb on - strand, within HMPREF1078_RS17680 at 101.479 kb on - strand, within HMPREF1078_RS17680 at 101.488 kb on - strand, within HMPREF1078_RS17680 at 101.636 kb on + strand, within HMPREF1078_RS17680 at 101.665 kb on - strand, within HMPREF1078_RS17680 at 101.693 kb on - strand, within HMPREF1078_RS17680 at 101.694 kb on + strand, within HMPREF1078_RS17680 at 101.694 kb on + strand, within HMPREF1078_RS17680 at 101.695 kb on - strand, within HMPREF1078_RS17680 at 101.698 kb on + strand, within HMPREF1078_RS17680 at 101.699 kb on - strand, within HMPREF1078_RS17680 at 102.074 kb on + strand, within HMPREF1078_RS17680 at 102.075 kb on - strand, within HMPREF1078_RS17680 at 102.144 kb on + strand, within HMPREF1078_RS17680 at 102.144 kb on + strand, within HMPREF1078_RS17680 at 102.145 kb on - strand, within HMPREF1078_RS17680 at 102.145 kb on - strand, within HMPREF1078_RS17680 at 102.145 kb on - strand, within HMPREF1078_RS17680 at 102.145 kb on - strand, within HMPREF1078_RS17680 at 102.149 kb on - strand, within HMPREF1078_RS17680 at 102.326 kb on - strand at 102.328 kb on - strand at 102.336 kb on + strand at 102.344 kb on + strand at 102.521 kb on - strand, within HMPREF1078_RS17685 at 102.763 kb on + strand, within HMPREF1078_RS17685 at 102.839 kb on - strand at 102.839 kb on - strand at 102.859 kb on + strand at 103.105 kb on + strand, within HMPREF1078_RS17690 at 103.105 kb on + strand, within HMPREF1078_RS17690 at 103.106 kb on - strand, within HMPREF1078_RS17690 at 103.120 kb on - strand, within HMPREF1078_RS17690 at 103.138 kb on - strand, within HMPREF1078_RS17690 at 103.305 kb on + strand, within HMPREF1078_RS17690 at 103.305 kb on + strand, within HMPREF1078_RS17690 at 103.305 kb on + strand, within HMPREF1078_RS17690 at 103.306 kb on - strand, within HMPREF1078_RS17690 at 103.306 kb on - strand, within HMPREF1078_RS17690 at 103.372 kb on - strand, within HMPREF1078_RS17690 at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.456 kb on - strand at 103.468 kb on + strand at 103.469 kb on - strand at 103.469 kb on - strand at 103.476 kb on + strand at 103.487 kb on + strand at 103.491 kb on + strand at 103.497 kb on + strand at 103.497 kb on + strand at 103.497 kb on + strand at 103.498 kb on - strand at 103.501 kb on - strand at 103.511 kb on + strand at 103.601 kb on - strand, within HMPREF1078_RS17695 at 103.601 kb on - strand, within HMPREF1078_RS17695 at 103.793 kb on + strand, within HMPREF1078_RS17695 at 103.794 kb on - strand, within HMPREF1078_RS17695 at 103.840 kb on - strand, within HMPREF1078_RS17695 at 103.840 kb on - strand, within HMPREF1078_RS17695 at 103.843 kb on + strand, within HMPREF1078_RS17695
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 101,411 + HMPREF1078_RS17680 0.12 -0.3 101,429 + HMPREF1078_RS17680 0.14 -0.3 101,429 + HMPREF1078_RS17680 0.14 -0.8 101,429 + HMPREF1078_RS17680 0.14 -1.4 101,430 - HMPREF1078_RS17680 0.14 -0.2 101,430 - HMPREF1078_RS17680 0.14 +0.1 101,430 - HMPREF1078_RS17680 0.14 -1.0 101,435 - HMPREF1078_RS17680 0.14 -1.0 101,441 + HMPREF1078_RS17680 0.15 -1.3 101,442 - HMPREF1078_RS17680 0.15 -0.0 101,479 - HMPREF1078_RS17680 0.19 -0.3 101,488 - HMPREF1078_RS17680 0.20 -0.1 101,636 + HMPREF1078_RS17680 0.34 +1.1 101,665 - HMPREF1078_RS17680 0.37 -0.1 101,693 - HMPREF1078_RS17680 0.39 +0.6 101,694 + HMPREF1078_RS17680 0.39 +0.0 101,694 + HMPREF1078_RS17680 0.39 -0.1 101,695 - HMPREF1078_RS17680 0.39 -0.6 101,698 + HMPREF1078_RS17680 0.40 -0.1 101,699 - HMPREF1078_RS17680 0.40 -1.4 102,074 + HMPREF1078_RS17680 0.76 -1.5 102,075 - HMPREF1078_RS17680 0.76 -0.7 102,144 + HMPREF1078_RS17680 0.83 +1.6 102,144 + HMPREF1078_RS17680 0.83 -0.2 102,145 - HMPREF1078_RS17680 0.83 -0.3 102,145 - HMPREF1078_RS17680 0.83 -0.4 102,145 - HMPREF1078_RS17680 0.83 +2.1 102,145 - HMPREF1078_RS17680 0.83 -0.1 102,149 - HMPREF1078_RS17680 0.83 -2.6 102,326 - -0.3 102,328 - -0.6 102,336 + -1.4 102,344 + +1.7 102,521 - HMPREF1078_RS17685 0.35 -2.4 102,763 + HMPREF1078_RS17685 0.82 +0.6 102,839 - +0.7 102,839 - -1.5 102,859 + +0.1 103,105 + HMPREF1078_RS17690 0.41 +0.2 103,105 + HMPREF1078_RS17690 0.41 -3.1 103,106 - HMPREF1078_RS17690 0.41 -1.0 103,120 - HMPREF1078_RS17690 0.43 -0.3 103,138 - HMPREF1078_RS17690 0.46 -1.1 103,305 + HMPREF1078_RS17690 0.74 +1.0 103,305 + HMPREF1078_RS17690 0.74 -1.2 103,305 + HMPREF1078_RS17690 0.74 -1.0 103,306 - HMPREF1078_RS17690 0.74 -3.4 103,306 - HMPREF1078_RS17690 0.74 -1.1 103,372 - HMPREF1078_RS17690 0.85 -1.1 103,455 + -0.7 103,455 + +0.6 103,455 + -0.4 103,456 - +0.1 103,468 + -2.6 103,469 - +0.8 103,469 - +0.6 103,476 + -0.1 103,487 + -2.3 103,491 + -1.4 103,497 + -1.1 103,497 + -0.3 103,497 + -2.3 103,498 - +1.4 103,501 - -0.3 103,511 + -0.6 103,601 - HMPREF1078_RS17695 0.13 -0.7 103,601 - HMPREF1078_RS17695 0.13 +0.1 103,793 + HMPREF1078_RS17695 0.33 -0.6 103,794 - HMPREF1078_RS17695 0.33 -1.4 103,840 - HMPREF1078_RS17695 0.38 -2.2 103,840 - HMPREF1078_RS17695 0.38 -1.8 103,843 + HMPREF1078_RS17695 0.38 -0.7
Or see this region's nucleotide sequence