Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS17245 and HMPREF1078_RS19035 are separated by 105 nucleotides HMPREF1078_RS19035 and HMPREF1078_RS17250 are separated by 12 nucleotides HMPREF1078_RS17250 and HMPREF1078_RS17255 are separated by 88 nucleotides HMPREF1078_RS17255 and HMPREF1078_RS17260 are separated by 213 nucleotides HMPREF1078_RS17260 and HMPREF1078_RS17265 are separated by 99 nucleotides
HMPREF1078_RS17245: HMPREF1078_RS17245 - beta-ketoacyl-ACP synthase III, at 166,558 to 167,562
_RS17245
HMPREF1078_RS19035: HMPREF1078_RS19035 - 50S ribosomal protein L32, at 167,668 to 167,853
_RS19035
HMPREF1078_RS17250: HMPREF1078_RS17250 - DUF177 domain-containing protein, at 167,866 to 168,453
_RS17250
HMPREF1078_RS17255: HMPREF1078_RS17255 - HAMP domain-containing sensor histidine kinase, at 168,542 to 169,696
_RS17255
HMPREF1078_RS17260: HMPREF1078_RS17260 - 5S ribosomal RNA, at 169,910 to 170,020
_RS17260
HMPREF1078_RS17265: HMPREF1078_RS17265 - 23S ribosomal RNA, at 170,120 to 172,995
_RS17265
Position (kb) 168
169
170 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 167.575 kb on - strand at 167.587 kb on - strand at 167.587 kb on - strand at 167.587 kb on - strand at 167.587 kb on - strand at 167.587 kb on - strand at 167.587 kb on - strand at 167.587 kb on - strand at 167.589 kb on - strand at 167.598 kb on - strand at 167.598 kb on - strand at 167.616 kb on + strand at 167.696 kb on - strand, within HMPREF1078_RS19035 at 167.875 kb on - strand at 167.930 kb on - strand, within HMPREF1078_RS17250 at 167.950 kb on - strand, within HMPREF1078_RS17250 at 168.433 kb on - strand at 168.531 kb on + strand at 168.531 kb on + strand at 168.543 kb on + strand at 168.550 kb on + strand at 168.551 kb on - strand at 168.552 kb on + strand at 168.553 kb on - strand at 168.604 kb on + strand at 168.605 kb on - strand at 168.611 kb on + strand at 168.611 kb on + strand at 168.627 kb on + strand at 168.688 kb on + strand, within HMPREF1078_RS17255 at 168.688 kb on + strand, within HMPREF1078_RS17255 at 168.700 kb on + strand, within HMPREF1078_RS17255 at 168.847 kb on + strand, within HMPREF1078_RS17255 at 168.932 kb on - strand, within HMPREF1078_RS17255 at 168.932 kb on - strand, within HMPREF1078_RS17255 at 168.943 kb on + strand, within HMPREF1078_RS17255 at 168.945 kb on + strand, within HMPREF1078_RS17255 at 168.945 kb on + strand, within HMPREF1078_RS17255 at 168.945 kb on + strand, within HMPREF1078_RS17255 at 168.946 kb on - strand, within HMPREF1078_RS17255 at 168.946 kb on - strand, within HMPREF1078_RS17255 at 168.946 kb on - strand, within HMPREF1078_RS17255 at 168.965 kb on - strand, within HMPREF1078_RS17255 at 168.970 kb on + strand, within HMPREF1078_RS17255 at 168.971 kb on - strand, within HMPREF1078_RS17255 at 168.971 kb on - strand, within HMPREF1078_RS17255 at 168.971 kb on - strand, within HMPREF1078_RS17255 at 169.082 kb on + strand, within HMPREF1078_RS17255 at 169.082 kb on + strand, within HMPREF1078_RS17255 at 169.083 kb on - strand, within HMPREF1078_RS17255 at 169.083 kb on - strand, within HMPREF1078_RS17255 at 169.083 kb on - strand, within HMPREF1078_RS17255 at 169.083 kb on - strand, within HMPREF1078_RS17255 at 169.084 kb on + strand, within HMPREF1078_RS17255 at 169.085 kb on - strand, within HMPREF1078_RS17255 at 169.101 kb on + strand, within HMPREF1078_RS17255 at 169.102 kb on - strand, within HMPREF1078_RS17255 at 169.130 kb on - strand, within HMPREF1078_RS17255 at 169.140 kb on - strand, within HMPREF1078_RS17255 at 169.140 kb on - strand, within HMPREF1078_RS17255 at 169.140 kb on - strand, within HMPREF1078_RS17255 at 169.159 kb on + strand, within HMPREF1078_RS17255 at 169.242 kb on - strand, within HMPREF1078_RS17255 at 169.250 kb on - strand, within HMPREF1078_RS17255 at 169.250 kb on - strand, within HMPREF1078_RS17255 at 169.260 kb on + strand, within HMPREF1078_RS17255 at 169.261 kb on - strand, within HMPREF1078_RS17255 at 169.261 kb on - strand, within HMPREF1078_RS17255 at 169.261 kb on - strand, within HMPREF1078_RS17255 at 169.266 kb on + strand, within HMPREF1078_RS17255 at 169.267 kb on - strand, within HMPREF1078_RS17255 at 169.302 kb on + strand, within HMPREF1078_RS17255 at 169.302 kb on + strand, within HMPREF1078_RS17255 at 169.303 kb on - strand, within HMPREF1078_RS17255 at 169.306 kb on - strand, within HMPREF1078_RS17255 at 169.306 kb on - strand, within HMPREF1078_RS17255 at 169.306 kb on - strand, within HMPREF1078_RS17255 at 169.311 kb on + strand, within HMPREF1078_RS17255 at 169.311 kb on + strand, within HMPREF1078_RS17255 at 169.311 kb on + strand, within HMPREF1078_RS17255 at 169.311 kb on + strand, within HMPREF1078_RS17255 at 169.311 kb on + strand, within HMPREF1078_RS17255 at 169.311 kb on + strand, within HMPREF1078_RS17255 at 169.311 kb on + strand, within HMPREF1078_RS17255 at 169.311 kb on + strand, within HMPREF1078_RS17255 at 169.311 kb on + strand, within HMPREF1078_RS17255 at 169.312 kb on - strand, within HMPREF1078_RS17255 at 169.336 kb on - strand, within HMPREF1078_RS17255 at 169.349 kb on - strand, within HMPREF1078_RS17255 at 169.377 kb on - strand, within HMPREF1078_RS17255 at 169.418 kb on - strand, within HMPREF1078_RS17255 at 169.457 kb on + strand, within HMPREF1078_RS17255 at 169.458 kb on - strand, within HMPREF1078_RS17255 at 169.474 kb on + strand, within HMPREF1078_RS17255 at 169.475 kb on - strand, within HMPREF1078_RS17255 at 169.475 kb on - strand, within HMPREF1078_RS17255 at 169.525 kb on + strand, within HMPREF1078_RS17255 at 169.526 kb on - strand, within HMPREF1078_RS17255 at 169.526 kb on - strand, within HMPREF1078_RS17255 at 169.543 kb on + strand, within HMPREF1078_RS17255 at 169.556 kb on + strand, within HMPREF1078_RS17255 at 169.557 kb on - strand, within HMPREF1078_RS17255 at 169.557 kb on - strand, within HMPREF1078_RS17255 at 169.596 kb on - strand at 169.603 kb on + strand at 169.645 kb on + strand at 169.655 kb on + strand at 169.683 kb on + strand at 169.683 kb on + strand at 169.683 kb on + strand at 169.683 kb on + strand at 169.683 kb on + strand at 169.683 kb on + strand at 169.683 kb on + strand at 169.683 kb on + strand at 169.683 kb on + strand at 169.684 kb on - strand at 169.684 kb on - strand at 169.684 kb on - strand at 169.684 kb on - strand at 169.684 kb on - strand at 169.684 kb on - strand at 169.684 kb on - strand at 169.684 kb on - strand at 169.684 kb on - strand at 169.684 kb on - strand at 169.684 kb on - strand at 169.684 kb on - strand at 169.686 kb on - strand at 169.686 kb on - strand at 169.688 kb on - strand at 169.688 kb on - strand at 169.715 kb on + strand at 169.715 kb on + strand at 169.715 kb on + strand at 169.715 kb on + strand at 169.716 kb on - strand at 169.716 kb on - strand at 169.716 kb on - strand at 169.716 kb on - strand at 169.717 kb on + strand at 169.717 kb on + strand at 169.718 kb on - strand at 169.718 kb on - strand at 169.718 kb on - strand at 169.718 kb on - strand at 169.718 kb on - strand at 169.718 kb on - strand at 169.718 kb on - strand at 169.719 kb on + strand at 169.719 kb on + strand at 169.735 kb on + strand at 169.735 kb on + strand at 169.735 kb on + strand at 169.735 kb on + strand at 169.736 kb on - strand at 169.740 kb on + strand at 169.740 kb on + strand at 169.743 kb on + strand at 169.746 kb on + strand at 169.747 kb on - strand at 169.748 kb on + strand at 169.748 kb on + strand at 169.748 kb on + strand at 169.748 kb on + strand at 169.748 kb on + strand at 169.748 kb on + strand at 169.748 kb on + strand at 169.748 kb on + strand at 169.749 kb on - strand at 169.749 kb on - strand at 169.749 kb on - strand at 169.749 kb on - strand at 169.749 kb on - strand at 169.749 kb on - strand at 169.751 kb on + strand at 169.751 kb on + strand at 169.751 kb on + strand at 169.752 kb on - strand at 169.794 kb on + strand at 169.794 kb on + strand at 169.809 kb on - strand at 169.829 kb on + strand at 169.829 kb on + strand at 169.830 kb on - strand at 170.071 kb on - strand at 170.071 kb on - strand at 170.071 kb on - strand at 170.104 kb on - strand at 170.104 kb on - strand at 170.104 kb on - strand at 170.104 kb on - strand at 170.106 kb on - strand at 170.106 kb on - strand at 170.106 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 167,575 - +0.1 167,587 - +1.6 167,587 - -1.9 167,587 - +0.2 167,587 - +0.7 167,587 - +0.2 167,587 - +1.1 167,587 - +2.3 167,589 - -1.0 167,598 - +0.2 167,598 - -0.9 167,616 + -0.6 167,696 - HMPREF1078_RS19035 0.15 +4.4 167,875 - -0.1 167,930 - HMPREF1078_RS17250 0.11 +2.4 167,950 - HMPREF1078_RS17250 0.14 -0.6 168,433 - +0.4 168,531 + -0.4 168,531 + -0.8 168,543 + -0.4 168,550 + +0.2 168,551 - -1.0 168,552 + -0.8 168,553 - -0.9 168,604 + +1.4 168,605 - -0.8 168,611 + -1.3 168,611 + +0.3 168,627 + -1.6 168,688 + HMPREF1078_RS17255 0.13 -0.9 168,688 + HMPREF1078_RS17255 0.13 +0.4 168,700 + HMPREF1078_RS17255 0.14 +0.6 168,847 + HMPREF1078_RS17255 0.26 -1.4 168,932 - HMPREF1078_RS17255 0.34 -1.1 168,932 - HMPREF1078_RS17255 0.34 +0.5 168,943 + HMPREF1078_RS17255 0.35 -2.5 168,945 + HMPREF1078_RS17255 0.35 -0.6 168,945 + HMPREF1078_RS17255 0.35 -2.1 168,945 + HMPREF1078_RS17255 0.35 -0.3 168,946 - HMPREF1078_RS17255 0.35 -1.5 168,946 - HMPREF1078_RS17255 0.35 +0.4 168,946 - HMPREF1078_RS17255 0.35 -0.2 168,965 - HMPREF1078_RS17255 0.37 -0.8 168,970 + HMPREF1078_RS17255 0.37 -1.8 168,971 - HMPREF1078_RS17255 0.37 -2.0 168,971 - HMPREF1078_RS17255 0.37 -2.3 168,971 - HMPREF1078_RS17255 0.37 -2.2 169,082 + HMPREF1078_RS17255 0.47 -0.4 169,082 + HMPREF1078_RS17255 0.47 -1.9 169,083 - HMPREF1078_RS17255 0.47 +0.4 169,083 - HMPREF1078_RS17255 0.47 -1.3 169,083 - HMPREF1078_RS17255 0.47 -1.1 169,083 - HMPREF1078_RS17255 0.47 -1.1 169,084 + HMPREF1078_RS17255 0.47 -0.4 169,085 - HMPREF1078_RS17255 0.47 -1.2 169,101 + HMPREF1078_RS17255 0.48 -1.4 169,102 - HMPREF1078_RS17255 0.48 -2.6 169,130 - HMPREF1078_RS17255 0.51 -0.5 169,140 - HMPREF1078_RS17255 0.52 -0.0 169,140 - HMPREF1078_RS17255 0.52 +1.4 169,140 - HMPREF1078_RS17255 0.52 -1.8 169,159 + HMPREF1078_RS17255 0.53 -1.0 169,242 - HMPREF1078_RS17255 0.61 -2.2 169,250 - HMPREF1078_RS17255 0.61 +0.1 169,250 - HMPREF1078_RS17255 0.61 -1.6 169,260 + HMPREF1078_RS17255 0.62 +0.7 169,261 - HMPREF1078_RS17255 0.62 -1.1 169,261 - HMPREF1078_RS17255 0.62 -0.8 169,261 - HMPREF1078_RS17255 0.62 -2.9 169,266 + HMPREF1078_RS17255 0.63 -0.5 169,267 - HMPREF1078_RS17255 0.63 -0.2 169,302 + HMPREF1078_RS17255 0.66 -1.1 169,302 + HMPREF1078_RS17255 0.66 -0.1 169,303 - HMPREF1078_RS17255 0.66 -1.1 169,306 - HMPREF1078_RS17255 0.66 -1.2 169,306 - HMPREF1078_RS17255 0.66 -1.1 169,306 - HMPREF1078_RS17255 0.66 +0.6 169,311 + HMPREF1078_RS17255 0.67 +0.4 169,311 + HMPREF1078_RS17255 0.67 -0.8 169,311 + HMPREF1078_RS17255 0.67 -2.8 169,311 + HMPREF1078_RS17255 0.67 -1.9 169,311 + HMPREF1078_RS17255 0.67 -1.4 169,311 + HMPREF1078_RS17255 0.67 -2.0 169,311 + HMPREF1078_RS17255 0.67 -2.7 169,311 + HMPREF1078_RS17255 0.67 -1.6 169,311 + HMPREF1078_RS17255 0.67 -0.4 169,312 - HMPREF1078_RS17255 0.67 -1.0 169,336 - HMPREF1078_RS17255 0.69 -0.5 169,349 - HMPREF1078_RS17255 0.70 -0.6 169,377 - HMPREF1078_RS17255 0.72 -1.5 169,418 - HMPREF1078_RS17255 0.76 -2.1 169,457 + HMPREF1078_RS17255 0.79 -2.4 169,458 - HMPREF1078_RS17255 0.79 -2.2 169,474 + HMPREF1078_RS17255 0.81 -0.6 169,475 - HMPREF1078_RS17255 0.81 -0.9 169,475 - HMPREF1078_RS17255 0.81 -1.4 169,525 + HMPREF1078_RS17255 0.85 +2.9 169,526 - HMPREF1078_RS17255 0.85 -1.6 169,526 - HMPREF1078_RS17255 0.85 -0.5 169,543 + HMPREF1078_RS17255 0.87 -1.5 169,556 + HMPREF1078_RS17255 0.88 -0.5 169,557 - HMPREF1078_RS17255 0.88 -1.6 169,557 - HMPREF1078_RS17255 0.88 -1.8 169,596 - -1.4 169,603 + -2.3 169,645 + -2.5 169,655 + -0.5 169,683 + +0.9 169,683 + -2.3 169,683 + -1.5 169,683 + +0.1 169,683 + -0.2 169,683 + +0.4 169,683 + -1.7 169,683 + +1.4 169,683 + -2.7 169,684 - -0.9 169,684 - -2.0 169,684 - -2.3 169,684 - -1.1 169,684 - -0.8 169,684 - -1.1 169,684 - -1.0 169,684 - +0.8 169,684 - +0.2 169,684 - -1.4 169,684 - -1.4 169,684 - -1.4 169,686 - -1.0 169,686 - -0.9 169,688 - +0.2 169,688 - -0.2 169,715 + -2.5 169,715 + -0.4 169,715 + +0.9 169,715 + -1.4 169,716 - +0.6 169,716 - -1.6 169,716 - +0.4 169,716 - +0.7 169,717 + -1.6 169,717 + -1.6 169,718 - -0.8 169,718 - -0.5 169,718 - -0.3 169,718 - -0.5 169,718 - +0.8 169,718 - -0.8 169,718 - +0.1 169,719 + -2.9 169,719 + -1.9 169,735 + -0.9 169,735 + -1.7 169,735 + -0.9 169,735 + -2.5 169,736 - -0.1 169,740 + +0.9 169,740 + -0.3 169,743 + -2.3 169,746 + -0.6 169,747 - -0.4 169,748 + -0.5 169,748 + +1.9 169,748 + +0.1 169,748 + +1.4 169,748 + +0.0 169,748 + +0.5 169,748 + -1.6 169,748 + +0.8 169,749 - -0.4 169,749 - -0.3 169,749 - +0.4 169,749 - -0.5 169,749 - -0.6 169,749 - -0.5 169,751 + +0.0 169,751 + -1.3 169,751 + +0.9 169,752 - -0.6 169,794 + -0.6 169,794 + -1.1 169,809 - -0.4 169,829 + -0.0 169,829 + +0.5 169,830 - +0.6 170,071 - +1.5 170,071 - +2.9 170,071 - +2.6 170,104 - +0.9 170,104 - +2.7 170,104 - +2.9 170,104 - +3.3 170,106 - +2.9 170,106 - +3.9 170,106 - +2.9
Or see this region's nucleotide sequence