Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS17135 and HMPREF1078_RS17140 are separated by 250 nucleotides HMPREF1078_RS17140 and HMPREF1078_RS17145 are separated by 70 nucleotides HMPREF1078_RS17145 and HMPREF1078_RS17150 are separated by 63 nucleotides
HMPREF1078_RS17135: HMPREF1078_RS17135 - tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB, at 140,367 to 141,737
_RS17135
HMPREF1078_RS17140: HMPREF1078_RS17140 - hypothetical protein, at 141,988 to 142,416
_RS17140
HMPREF1078_RS17145: HMPREF1078_RS17145 - acetyl-CoA hydrolase/transferase family protein, at 142,487 to 143,983
_RS17145
HMPREF1078_RS17150: HMPREF1078_RS17150 - ATP-binding protein, at 144,047 to 145,177
_RS17150
Position (kb) 142
143
144 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 141.499 kb on + strand, within HMPREF1078_RS17135 at 141.551 kb on + strand, within HMPREF1078_RS17135 at 141.552 kb on - strand, within HMPREF1078_RS17135 at 141.598 kb on + strand, within HMPREF1078_RS17135 at 141.661 kb on + strand at 141.740 kb on + strand at 141.747 kb on + strand at 141.748 kb on - strand at 141.762 kb on - strand at 141.818 kb on + strand at 141.819 kb on - strand at 141.819 kb on - strand at 141.820 kb on + strand at 141.820 kb on + strand at 141.821 kb on - strand at 141.851 kb on + strand at 141.855 kb on + strand at 141.867 kb on + strand at 141.876 kb on + strand at 141.900 kb on + strand at 141.901 kb on - strand at 141.910 kb on + strand at 141.910 kb on + strand at 141.910 kb on + strand at 141.911 kb on - strand at 141.911 kb on - strand at 141.911 kb on - strand at 141.911 kb on - strand at 141.911 kb on - strand at 141.912 kb on + strand at 141.913 kb on - strand at 141.916 kb on + strand at 141.916 kb on + strand at 141.917 kb on - strand at 141.917 kb on - strand at 141.917 kb on - strand at 141.917 kb on - strand at 141.919 kb on + strand at 141.919 kb on + strand at 141.919 kb on + strand at 141.919 kb on + strand at 141.919 kb on + strand at 141.919 kb on + strand at 141.919 kb on + strand at 141.919 kb on + strand at 141.920 kb on - strand at 141.920 kb on - strand at 141.920 kb on - strand at 141.920 kb on - strand at 141.920 kb on - strand at 141.920 kb on - strand at 141.920 kb on - strand at 141.921 kb on + strand at 141.921 kb on + strand at 141.921 kb on + strand at 141.921 kb on + strand at 141.921 kb on + strand at 141.921 kb on + strand at 141.921 kb on + strand at 141.921 kb on + strand at 141.921 kb on + strand at 141.921 kb on + strand at 141.921 kb on + strand at 141.921 kb on + strand at 141.921 kb on + strand at 141.921 kb on + strand at 141.921 kb on + strand at 141.922 kb on - strand at 141.922 kb on - strand at 141.922 kb on - strand at 141.922 kb on - strand at 141.922 kb on - strand at 141.922 kb on - strand at 141.922 kb on - strand at 141.922 kb on - strand at 141.922 kb on - strand at 141.922 kb on - strand at 141.922 kb on - strand at 141.925 kb on + strand at 141.925 kb on + strand at 141.925 kb on + strand at 141.926 kb on - strand at 141.926 kb on - strand at 141.944 kb on - strand at 141.947 kb on + strand at 141.951 kb on - strand at 141.987 kb on + strand at 142.010 kb on + strand at 142.012 kb on + strand at 142.012 kb on + strand at 142.012 kb on + strand at 142.013 kb on - strand at 142.014 kb on + strand at 142.014 kb on + strand at 142.014 kb on + strand at 142.014 kb on + strand at 142.015 kb on - strand at 142.015 kb on - strand at 142.015 kb on - strand at 142.015 kb on - strand at 142.015 kb on - strand at 142.015 kb on - strand at 142.015 kb on - strand at 142.015 kb on - strand at 142.015 kb on - strand at 142.015 kb on - strand at 142.015 kb on - strand at 142.015 kb on - strand at 142.029 kb on - strand at 142.089 kb on - strand, within HMPREF1078_RS17140 at 142.089 kb on - strand, within HMPREF1078_RS17140 at 142.128 kb on + strand, within HMPREF1078_RS17140 at 142.128 kb on + strand, within HMPREF1078_RS17140 at 142.129 kb on - strand, within HMPREF1078_RS17140 at 142.187 kb on + strand, within HMPREF1078_RS17140 at 142.199 kb on + strand, within HMPREF1078_RS17140 at 142.199 kb on + strand, within HMPREF1078_RS17140 at 142.338 kb on + strand, within HMPREF1078_RS17140 at 142.338 kb on + strand, within HMPREF1078_RS17140 at 142.338 kb on + strand, within HMPREF1078_RS17140 at 142.338 kb on + strand, within HMPREF1078_RS17140 at 142.338 kb on + strand, within HMPREF1078_RS17140 at 142.339 kb on - strand, within HMPREF1078_RS17140 at 142.383 kb on + strand at 142.384 kb on - strand at 142.387 kb on + strand at 142.397 kb on + strand at 142.397 kb on + strand at 142.411 kb on + strand at 142.414 kb on + strand at 142.419 kb on + strand at 142.419 kb on + strand at 142.419 kb on + strand at 142.420 kb on - strand at 142.420 kb on - strand at 142.472 kb on + strand at 142.484 kb on - strand at 142.654 kb on + strand, within HMPREF1078_RS17145 at 142.949 kb on - strand, within HMPREF1078_RS17145 at 143.003 kb on - strand, within HMPREF1078_RS17145 at 143.007 kb on - strand, within HMPREF1078_RS17145 at 143.439 kb on - strand, within HMPREF1078_RS17145 at 143.540 kb on - strand, within HMPREF1078_RS17145 at 143.557 kb on + strand, within HMPREF1078_RS17145 at 143.559 kb on + strand, within HMPREF1078_RS17145 at 143.840 kb on + strand at 143.972 kb on + strand at 143.990 kb on + strand at 143.991 kb on - strand at 143.996 kb on - strand at 143.996 kb on - strand at 143.996 kb on - strand at 143.996 kb on - strand at 143.996 kb on - strand at 143.998 kb on - strand at 143.998 kb on - strand at 143.998 kb on - strand at 144.000 kb on - strand at 144.000 kb on - strand at 144.000 kb on - strand at 144.000 kb on - strand at 144.184 kb on + strand, within HMPREF1078_RS17150 at 144.185 kb on - strand, within HMPREF1078_RS17150 at 144.229 kb on + strand, within HMPREF1078_RS17150 at 144.289 kb on - strand, within HMPREF1078_RS17150 at 144.430 kb on - strand, within HMPREF1078_RS17150 at 144.452 kb on - strand, within HMPREF1078_RS17150 at 144.452 kb on - strand, within HMPREF1078_RS17150 at 144.452 kb on - strand, within HMPREF1078_RS17150 at 144.458 kb on - strand, within HMPREF1078_RS17150 at 144.501 kb on + strand, within HMPREF1078_RS17150 at 144.501 kb on + strand, within HMPREF1078_RS17150 at 144.501 kb on + strand, within HMPREF1078_RS17150 at 144.535 kb on + strand, within HMPREF1078_RS17150 at 144.535 kb on + strand, within HMPREF1078_RS17150 at 144.535 kb on + strand, within HMPREF1078_RS17150 at 144.539 kb on + strand, within HMPREF1078_RS17150 at 144.539 kb on + strand, within HMPREF1078_RS17150 at 144.540 kb on - strand, within HMPREF1078_RS17150 at 144.540 kb on - strand, within HMPREF1078_RS17150 at 144.568 kb on + strand, within HMPREF1078_RS17150 at 144.605 kb on + strand, within HMPREF1078_RS17150 at 144.642 kb on + strand, within HMPREF1078_RS17150 at 144.642 kb on + strand, within HMPREF1078_RS17150 at 144.643 kb on - strand, within HMPREF1078_RS17150 at 144.643 kb on - strand, within HMPREF1078_RS17150 at 144.643 kb on - strand, within HMPREF1078_RS17150 at 144.646 kb on + strand, within HMPREF1078_RS17150 at 144.646 kb on + strand, within HMPREF1078_RS17150 at 144.647 kb on - strand, within HMPREF1078_RS17150 at 144.706 kb on + strand, within HMPREF1078_RS17150 at 144.707 kb on - strand, within HMPREF1078_RS17150 at 144.715 kb on + strand, within HMPREF1078_RS17150 at 144.715 kb on + strand, within HMPREF1078_RS17150 at 144.715 kb on + strand, within HMPREF1078_RS17150 at 144.820 kb on + strand, within HMPREF1078_RS17150 at 144.821 kb on - strand, within HMPREF1078_RS17150 at 144.821 kb on - strand, within HMPREF1078_RS17150 at 144.860 kb on - strand, within HMPREF1078_RS17150 at 144.957 kb on + strand, within HMPREF1078_RS17150 at 144.962 kb on - strand, within HMPREF1078_RS17150 at 144.962 kb on - strand, within HMPREF1078_RS17150 at 144.962 kb on - strand, within HMPREF1078_RS17150 at 144.976 kb on + strand, within HMPREF1078_RS17150 at 144.977 kb on - strand, within HMPREF1078_RS17150 at 144.977 kb on - strand, within HMPREF1078_RS17150 at 144.977 kb on - strand, within HMPREF1078_RS17150 at 144.981 kb on + strand, within HMPREF1078_RS17150 at 144.982 kb on - strand, within HMPREF1078_RS17150
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 141,499 + HMPREF1078_RS17135 0.83 +0.6 141,551 + HMPREF1078_RS17135 0.86 -1.3 141,552 - HMPREF1078_RS17135 0.86 +0.4 141,598 + HMPREF1078_RS17135 0.90 +0.6 141,661 + +0.6 141,740 + -1.0 141,747 + +0.6 141,748 - -0.0 141,762 - +1.2 141,818 + +0.3 141,819 - +2.1 141,819 - +1.9 141,820 + -1.4 141,820 + +0.3 141,821 - +0.9 141,851 + -0.2 141,855 + +0.1 141,867 + -0.4 141,876 + +2.2 141,900 + +0.8 141,901 - +1.4 141,910 + +0.6 141,910 + +0.7 141,910 + +1.0 141,911 - +1.6 141,911 - +1.0 141,911 - +0.2 141,911 - -1.3 141,911 - +0.4 141,912 + +0.9 141,913 - +1.5 141,916 + -0.5 141,916 + -0.7 141,917 - -2.0 141,917 - +0.2 141,917 - +0.2 141,917 - +0.6 141,919 + -0.2 141,919 + +0.5 141,919 + -0.4 141,919 + -1.2 141,919 + -0.9 141,919 + -1.1 141,919 + -0.5 141,919 + +0.2 141,920 - +2.1 141,920 - +0.2 141,920 - -1.2 141,920 - -0.3 141,920 - -1.5 141,920 - -0.9 141,920 - -0.6 141,921 + +0.7 141,921 + -1.0 141,921 + -0.9 141,921 + -1.0 141,921 + +0.0 141,921 + +0.1 141,921 + +1.1 141,921 + +1.0 141,921 + +0.4 141,921 + +1.7 141,921 + +0.9 141,921 + -1.7 141,921 + -0.4 141,921 + -0.3 141,921 + -0.2 141,922 - +0.5 141,922 - +1.4 141,922 - -0.4 141,922 - +0.9 141,922 - -0.1 141,922 - -0.1 141,922 - +0.3 141,922 - +0.6 141,922 - -1.0 141,922 - +0.9 141,922 - +0.6 141,925 + +1.2 141,925 + +0.2 141,925 + +0.6 141,926 - +0.2 141,926 - -1.8 141,944 - +0.2 141,947 + +0.8 141,951 - -0.8 141,987 + +0.1 142,010 + +1.0 142,012 + -0.8 142,012 + +0.4 142,012 + +3.0 142,013 - +1.2 142,014 + +0.9 142,014 + +0.9 142,014 + +0.5 142,014 + -0.9 142,015 - -1.1 142,015 - +1.5 142,015 - -1.2 142,015 - -1.1 142,015 - -0.2 142,015 - +0.4 142,015 - +0.1 142,015 - -1.6 142,015 - +0.2 142,015 - +0.2 142,015 - +1.7 142,015 - +0.7 142,029 - -0.4 142,089 - HMPREF1078_RS17140 0.24 +0.3 142,089 - HMPREF1078_RS17140 0.24 -0.7 142,128 + HMPREF1078_RS17140 0.33 +0.2 142,128 + HMPREF1078_RS17140 0.33 -0.4 142,129 - HMPREF1078_RS17140 0.33 -0.5 142,187 + HMPREF1078_RS17140 0.46 +0.6 142,199 + HMPREF1078_RS17140 0.49 +0.4 142,199 + HMPREF1078_RS17140 0.49 +0.4 142,338 + HMPREF1078_RS17140 0.82 +0.4 142,338 + HMPREF1078_RS17140 0.82 -0.2 142,338 + HMPREF1078_RS17140 0.82 -0.8 142,338 + HMPREF1078_RS17140 0.82 +0.7 142,338 + HMPREF1078_RS17140 0.82 +0.6 142,339 - HMPREF1078_RS17140 0.82 +1.2 142,383 + -0.6 142,384 - -0.6 142,387 + +0.6 142,397 + +0.1 142,397 + -1.4 142,411 + +1.7 142,414 + +0.1 142,419 + +0.4 142,419 + +0.6 142,419 + +1.4 142,420 - -0.9 142,420 - +0.4 142,472 + -1.3 142,484 - -0.4 142,654 + HMPREF1078_RS17145 0.11 +0.4 142,949 - HMPREF1078_RS17145 0.31 +0.1 143,003 - HMPREF1078_RS17145 0.34 +0.9 143,007 - HMPREF1078_RS17145 0.35 -0.9 143,439 - HMPREF1078_RS17145 0.64 +2.9 143,540 - HMPREF1078_RS17145 0.70 +0.6 143,557 + HMPREF1078_RS17145 0.71 +0.1 143,559 + HMPREF1078_RS17145 0.72 +0.6 143,840 + +0.9 143,972 + -0.7 143,990 + +0.8 143,991 - +1.8 143,996 - +0.6 143,996 - +0.7 143,996 - +1.1 143,996 - +1.5 143,996 - +1.1 143,998 - +0.6 143,998 - -0.7 143,998 - +0.5 144,000 - +2.4 144,000 - +1.7 144,000 - +0.7 144,000 - -0.3 144,184 + HMPREF1078_RS17150 0.12 -0.4 144,185 - HMPREF1078_RS17150 0.12 +0.6 144,229 + HMPREF1078_RS17150 0.16 +0.6 144,289 - HMPREF1078_RS17150 0.21 +0.1 144,430 - HMPREF1078_RS17150 0.34 +1.3 144,452 - HMPREF1078_RS17150 0.36 +0.6 144,452 - HMPREF1078_RS17150 0.36 +0.8 144,452 - HMPREF1078_RS17150 0.36 +0.4 144,458 - HMPREF1078_RS17150 0.36 +1.3 144,501 + HMPREF1078_RS17150 0.40 -2.0 144,501 + HMPREF1078_RS17150 0.40 -1.0 144,501 + HMPREF1078_RS17150 0.40 -0.6 144,535 + HMPREF1078_RS17150 0.43 +0.9 144,535 + HMPREF1078_RS17150 0.43 -0.8 144,535 + HMPREF1078_RS17150 0.43 +1.1 144,539 + HMPREF1078_RS17150 0.44 +0.3 144,539 + HMPREF1078_RS17150 0.44 +0.7 144,540 - HMPREF1078_RS17150 0.44 -3.1 144,540 - HMPREF1078_RS17150 0.44 -1.5 144,568 + HMPREF1078_RS17150 0.46 +1.9 144,605 + HMPREF1078_RS17150 0.49 +2.3 144,642 + HMPREF1078_RS17150 0.53 -0.4 144,642 + HMPREF1078_RS17150 0.53 -2.6 144,643 - HMPREF1078_RS17150 0.53 +1.3 144,643 - HMPREF1078_RS17150 0.53 -2.4 144,643 - HMPREF1078_RS17150 0.53 +0.6 144,646 + HMPREF1078_RS17150 0.53 -1.9 144,646 + HMPREF1078_RS17150 0.53 +0.7 144,647 - HMPREF1078_RS17150 0.53 -0.5 144,706 + HMPREF1078_RS17150 0.58 +0.2 144,707 - HMPREF1078_RS17150 0.58 -0.4 144,715 + HMPREF1078_RS17150 0.59 -0.4 144,715 + HMPREF1078_RS17150 0.59 -1.9 144,715 + HMPREF1078_RS17150 0.59 -0.4 144,820 + HMPREF1078_RS17150 0.68 +0.4 144,821 - HMPREF1078_RS17150 0.68 -0.4 144,821 - HMPREF1078_RS17150 0.68 -2.6 144,860 - HMPREF1078_RS17150 0.72 +4.4 144,957 + HMPREF1078_RS17150 0.80 +0.2 144,962 - HMPREF1078_RS17150 0.81 -0.6 144,962 - HMPREF1078_RS17150 0.81 -2.1 144,962 - HMPREF1078_RS17150 0.81 +1.2 144,976 + HMPREF1078_RS17150 0.82 -0.5 144,977 - HMPREF1078_RS17150 0.82 +0.2 144,977 - HMPREF1078_RS17150 0.82 +0.1 144,977 - HMPREF1078_RS17150 0.82 +1.1 144,981 + HMPREF1078_RS17150 0.83 +0.8 144,982 - HMPREF1078_RS17150 0.83 -0.9
Or see this region's nucleotide sequence