Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS16700 and HMPREF1078_RS16705 are separated by 97 nucleotides HMPREF1078_RS16705 and HMPREF1078_RS16710 are separated by 29 nucleotides HMPREF1078_RS16710 and HMPREF1078_RS16715 are separated by 68 nucleotides HMPREF1078_RS16715 and HMPREF1078_RS16720 are separated by 90 nucleotides
HMPREF1078_RS16700: HMPREF1078_RS16700 - PatB family C-S lyase, at 54,879 to 56,054
_RS16700
HMPREF1078_RS16705: HMPREF1078_RS16705 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 56,152 to 56,730
_RS16705
HMPREF1078_RS16710: HMPREF1078_RS16710 - chorismate synthase, at 56,760 to 57,830
_RS16710
HMPREF1078_RS16715: HMPREF1078_RS16715 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 57,899 to 58,372
_RS16715
HMPREF1078_RS16720: HMPREF1078_RS16720 - DUF4783 domain-containing protein, at 58,463 to 58,834
_RS16720
Position (kb) 56
57
58 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 55.764 kb on + strand, within HMPREF1078_RS16700 at 55.764 kb on + strand, within HMPREF1078_RS16700 at 55.764 kb on + strand, within HMPREF1078_RS16700 at 55.764 kb on + strand, within HMPREF1078_RS16700 at 55.764 kb on + strand, within HMPREF1078_RS16700 at 55.764 kb on + strand, within HMPREF1078_RS16700 at 55.764 kb on + strand, within HMPREF1078_RS16700 at 55.765 kb on - strand, within HMPREF1078_RS16700 at 55.765 kb on - strand, within HMPREF1078_RS16700 at 55.765 kb on - strand, within HMPREF1078_RS16700 at 55.765 kb on - strand, within HMPREF1078_RS16700 at 55.765 kb on - strand, within HMPREF1078_RS16700 at 55.767 kb on - strand, within HMPREF1078_RS16700 at 55.798 kb on - strand, within HMPREF1078_RS16700 at 55.856 kb on - strand, within HMPREF1078_RS16700 at 55.900 kb on + strand, within HMPREF1078_RS16700 at 55.901 kb on - strand, within HMPREF1078_RS16700 at 55.917 kb on - strand, within HMPREF1078_RS16700 at 55.974 kb on - strand at 55.974 kb on - strand at 56.045 kb on + strand at 56.111 kb on + strand at 56.128 kb on + strand at 56.137 kb on + strand at 56.169 kb on + strand at 56.169 kb on + strand at 56.184 kb on + strand at 56.188 kb on + strand at 56.188 kb on + strand at 56.258 kb on - strand, within HMPREF1078_RS16705 at 56.321 kb on + strand, within HMPREF1078_RS16705 at 56.334 kb on + strand, within HMPREF1078_RS16705 at 56.362 kb on + strand, within HMPREF1078_RS16705 at 56.371 kb on + strand, within HMPREF1078_RS16705 at 56.371 kb on + strand, within HMPREF1078_RS16705 at 56.371 kb on + strand, within HMPREF1078_RS16705 at 56.387 kb on + strand, within HMPREF1078_RS16705 at 56.388 kb on - strand, within HMPREF1078_RS16705 at 56.418 kb on - strand, within HMPREF1078_RS16705 at 56.490 kb on + strand, within HMPREF1078_RS16705 at 56.513 kb on + strand, within HMPREF1078_RS16705 at 56.513 kb on + strand, within HMPREF1078_RS16705 at 56.753 kb on - strand at 56.765 kb on + strand at 56.765 kb on + strand at 56.766 kb on - strand at 56.780 kb on - strand at 56.781 kb on + strand at 56.781 kb on + strand at 56.782 kb on - strand at 56.830 kb on + strand at 56.831 kb on - strand at 56.831 kb on - strand at 56.834 kb on - strand at 56.860 kb on + strand at 56.860 kb on + strand at 56.861 kb on - strand at 56.864 kb on + strand at 56.865 kb on - strand at 56.873 kb on + strand, within HMPREF1078_RS16710 at 56.873 kb on + strand, within HMPREF1078_RS16710 at 56.947 kb on + strand, within HMPREF1078_RS16710 at 56.963 kb on + strand, within HMPREF1078_RS16710 at 56.967 kb on + strand, within HMPREF1078_RS16710 at 56.967 kb on + strand, within HMPREF1078_RS16710 at 56.968 kb on - strand, within HMPREF1078_RS16710 at 56.968 kb on - strand, within HMPREF1078_RS16710 at 57.036 kb on + strand, within HMPREF1078_RS16710 at 57.036 kb on + strand, within HMPREF1078_RS16710 at 57.041 kb on + strand, within HMPREF1078_RS16710 at 57.044 kb on + strand, within HMPREF1078_RS16710 at 57.044 kb on + strand, within HMPREF1078_RS16710 at 57.044 kb on + strand, within HMPREF1078_RS16710 at 57.044 kb on + strand, within HMPREF1078_RS16710 at 57.044 kb on + strand, within HMPREF1078_RS16710 at 57.057 kb on + strand, within HMPREF1078_RS16710 at 57.079 kb on + strand, within HMPREF1078_RS16710 at 57.079 kb on - strand, within HMPREF1078_RS16710 at 57.097 kb on - strand, within HMPREF1078_RS16710 at 57.097 kb on - strand, within HMPREF1078_RS16710 at 57.208 kb on + strand, within HMPREF1078_RS16710 at 57.209 kb on - strand, within HMPREF1078_RS16710 at 57.255 kb on + strand, within HMPREF1078_RS16710 at 57.264 kb on + strand, within HMPREF1078_RS16710 at 57.296 kb on - strand, within HMPREF1078_RS16710 at 57.366 kb on - strand, within HMPREF1078_RS16710 at 57.428 kb on - strand, within HMPREF1078_RS16710 at 57.495 kb on + strand, within HMPREF1078_RS16710 at 57.521 kb on - strand, within HMPREF1078_RS16710 at 57.522 kb on + strand, within HMPREF1078_RS16710 at 57.581 kb on + strand, within HMPREF1078_RS16710 at 57.601 kb on + strand, within HMPREF1078_RS16710 at 57.602 kb on - strand, within HMPREF1078_RS16710 at 57.611 kb on + strand, within HMPREF1078_RS16710 at 57.611 kb on + strand, within HMPREF1078_RS16710 at 57.629 kb on + strand, within HMPREF1078_RS16710 at 57.633 kb on + strand, within HMPREF1078_RS16710 at 57.633 kb on + strand, within HMPREF1078_RS16710 at 57.633 kb on + strand, within HMPREF1078_RS16710 at 57.634 kb on - strand, within HMPREF1078_RS16710 at 57.693 kb on - strand, within HMPREF1078_RS16710 at 57.809 kb on + strand at 57.810 kb on - strand at 57.849 kb on + strand at 57.850 kb on - strand at 57.850 kb on - strand at 57.855 kb on + strand at 57.856 kb on - strand at 57.866 kb on + strand at 57.867 kb on - strand at 57.876 kb on + strand at 57.882 kb on + strand at 57.882 kb on + strand at 57.900 kb on + strand at 57.900 kb on + strand at 57.901 kb on - strand at 57.901 kb on - strand at 57.913 kb on - strand at 57.946 kb on - strand at 57.946 kb on - strand at 58.090 kb on + strand, within HMPREF1078_RS16715 at 58.091 kb on - strand, within HMPREF1078_RS16715 at 58.110 kb on + strand, within HMPREF1078_RS16715 at 58.110 kb on + strand, within HMPREF1078_RS16715 at 58.110 kb on + strand, within HMPREF1078_RS16715 at 58.110 kb on + strand, within HMPREF1078_RS16715 at 58.110 kb on + strand, within HMPREF1078_RS16715 at 58.110 kb on + strand, within HMPREF1078_RS16715 at 58.110 kb on + strand, within HMPREF1078_RS16715 at 58.110 kb on + strand, within HMPREF1078_RS16715 at 58.111 kb on - strand, within HMPREF1078_RS16715 at 58.111 kb on - strand, within HMPREF1078_RS16715 at 58.167 kb on + strand, within HMPREF1078_RS16715 at 58.167 kb on + strand, within HMPREF1078_RS16715 at 58.182 kb on - strand, within HMPREF1078_RS16715 at 58.250 kb on - strand, within HMPREF1078_RS16715 at 58.282 kb on + strand, within HMPREF1078_RS16715 at 58.283 kb on - strand, within HMPREF1078_RS16715 at 58.303 kb on + strand, within HMPREF1078_RS16715 at 58.303 kb on + strand, within HMPREF1078_RS16715 at 58.304 kb on - strand, within HMPREF1078_RS16715 at 58.304 kb on - strand, within HMPREF1078_RS16715 at 58.305 kb on + strand, within HMPREF1078_RS16715 at 58.306 kb on - strand, within HMPREF1078_RS16715 at 58.402 kb on - strand at 58.422 kb on + strand at 58.422 kb on + strand at 58.422 kb on + strand at 58.430 kb on + strand at 58.435 kb on + strand at 58.438 kb on + strand at 58.512 kb on + strand, within HMPREF1078_RS16720 at 58.512 kb on + strand, within HMPREF1078_RS16720 at 58.527 kb on + strand, within HMPREF1078_RS16720 at 58.534 kb on + strand, within HMPREF1078_RS16720 at 58.592 kb on + strand, within HMPREF1078_RS16720 at 58.746 kb on + strand, within HMPREF1078_RS16720 at 58.750 kb on + strand, within HMPREF1078_RS16720 at 58.750 kb on + strand, within HMPREF1078_RS16720 at 58.750 kb on + strand, within HMPREF1078_RS16720 at 58.750 kb on + strand, within HMPREF1078_RS16720 at 58.750 kb on + strand, within HMPREF1078_RS16720 at 58.750 kb on + strand, within HMPREF1078_RS16720 at 58.784 kb on + strand, within HMPREF1078_RS16720 at 58.784 kb on + strand, within HMPREF1078_RS16720 at 58.810 kb on + strand at 58.812 kb on + strand at 58.812 kb on + strand at 58.812 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 55,764 + HMPREF1078_RS16700 0.75 -1.9 55,764 + HMPREF1078_RS16700 0.75 -1.3 55,764 + HMPREF1078_RS16700 0.75 -0.0 55,764 + HMPREF1078_RS16700 0.75 -0.8 55,764 + HMPREF1078_RS16700 0.75 -0.2 55,764 + HMPREF1078_RS16700 0.75 +0.7 55,764 + HMPREF1078_RS16700 0.75 +1.4 55,765 - HMPREF1078_RS16700 0.75 -0.6 55,765 - HMPREF1078_RS16700 0.75 +0.0 55,765 - HMPREF1078_RS16700 0.75 +1.7 55,765 - HMPREF1078_RS16700 0.75 -1.1 55,765 - HMPREF1078_RS16700 0.75 -1.9 55,767 - HMPREF1078_RS16700 0.76 -1.2 55,798 - HMPREF1078_RS16700 0.78 +0.2 55,856 - HMPREF1078_RS16700 0.83 +0.0 55,900 + HMPREF1078_RS16700 0.87 +0.0 55,901 - HMPREF1078_RS16700 0.87 -0.6 55,917 - HMPREF1078_RS16700 0.88 -1.7 55,974 - -3.2 55,974 - +0.2 56,045 + -0.1 56,111 + -0.0 56,128 + -1.6 56,137 + +1.5 56,169 + -1.4 56,169 + +2.8 56,184 + +0.0 56,188 + -0.2 56,188 + -0.8 56,258 - HMPREF1078_RS16705 0.18 +1.4 56,321 + HMPREF1078_RS16705 0.29 -1.2 56,334 + HMPREF1078_RS16705 0.31 -0.1 56,362 + HMPREF1078_RS16705 0.36 -2.8 56,371 + HMPREF1078_RS16705 0.38 -2.0 56,371 + HMPREF1078_RS16705 0.38 -0.9 56,371 + HMPREF1078_RS16705 0.38 -1.5 56,387 + HMPREF1078_RS16705 0.41 +0.9 56,388 - HMPREF1078_RS16705 0.41 -0.2 56,418 - HMPREF1078_RS16705 0.46 +1.9 56,490 + HMPREF1078_RS16705 0.58 -1.5 56,513 + HMPREF1078_RS16705 0.62 -2.7 56,513 + HMPREF1078_RS16705 0.62 +1.7 56,753 - -2.4 56,765 + -1.0 56,765 + -0.2 56,766 - -2.0 56,780 - +0.6 56,781 + -1.4 56,781 + -0.6 56,782 - +0.4 56,830 + -1.0 56,831 - -0.9 56,831 - +0.1 56,834 - -1.0 56,860 + -0.2 56,860 + -0.6 56,861 - +0.9 56,864 + +0.9 56,865 - -0.5 56,873 + HMPREF1078_RS16710 0.11 -1.1 56,873 + HMPREF1078_RS16710 0.11 -1.0 56,947 + HMPREF1078_RS16710 0.17 -1.0 56,963 + HMPREF1078_RS16710 0.19 -1.2 56,967 + HMPREF1078_RS16710 0.19 -1.0 56,967 + HMPREF1078_RS16710 0.19 -0.8 56,968 - HMPREF1078_RS16710 0.19 +0.4 56,968 - HMPREF1078_RS16710 0.19 +0.6 57,036 + HMPREF1078_RS16710 0.26 -0.1 57,036 + HMPREF1078_RS16710 0.26 -0.4 57,041 + HMPREF1078_RS16710 0.26 -0.5 57,044 + HMPREF1078_RS16710 0.27 -1.5 57,044 + HMPREF1078_RS16710 0.27 -1.2 57,044 + HMPREF1078_RS16710 0.27 -1.2 57,044 + HMPREF1078_RS16710 0.27 -0.2 57,044 + HMPREF1078_RS16710 0.27 +0.9 57,057 + HMPREF1078_RS16710 0.28 +1.9 57,079 + HMPREF1078_RS16710 0.30 -1.5 57,079 - HMPREF1078_RS16710 0.30 -0.9 57,097 - HMPREF1078_RS16710 0.31 +0.1 57,097 - HMPREF1078_RS16710 0.31 -1.1 57,208 + HMPREF1078_RS16710 0.42 -0.2 57,209 - HMPREF1078_RS16710 0.42 -0.3 57,255 + HMPREF1078_RS16710 0.46 -1.6 57,264 + HMPREF1078_RS16710 0.47 -0.6 57,296 - HMPREF1078_RS16710 0.50 -1.0 57,366 - HMPREF1078_RS16710 0.57 -1.1 57,428 - HMPREF1078_RS16710 0.62 -0.2 57,495 + HMPREF1078_RS16710 0.69 -0.1 57,521 - HMPREF1078_RS16710 0.71 +0.4 57,522 + HMPREF1078_RS16710 0.71 -1.8 57,581 + HMPREF1078_RS16710 0.77 -1.1 57,601 + HMPREF1078_RS16710 0.79 +0.4 57,602 - HMPREF1078_RS16710 0.79 +0.1 57,611 + HMPREF1078_RS16710 0.79 +2.6 57,611 + HMPREF1078_RS16710 0.79 -0.1 57,629 + HMPREF1078_RS16710 0.81 -1.3 57,633 + HMPREF1078_RS16710 0.82 +0.9 57,633 + HMPREF1078_RS16710 0.82 -0.5 57,633 + HMPREF1078_RS16710 0.82 -1.3 57,634 - HMPREF1078_RS16710 0.82 -0.6 57,693 - HMPREF1078_RS16710 0.87 -2.1 57,809 + +2.5 57,810 - -1.2 57,849 + +1.1 57,850 - -0.2 57,850 - +0.9 57,855 + -2.1 57,856 - -0.7 57,866 + +0.9 57,867 - +1.1 57,876 + -1.5 57,882 + +0.3 57,882 + -0.2 57,900 + -0.2 57,900 + -1.4 57,901 - +1.1 57,901 - -0.1 57,913 - -0.2 57,946 - +1.0 57,946 - -0.0 58,090 + HMPREF1078_RS16715 0.40 +0.9 58,091 - HMPREF1078_RS16715 0.41 -1.3 58,110 + HMPREF1078_RS16715 0.45 +0.8 58,110 + HMPREF1078_RS16715 0.45 -0.1 58,110 + HMPREF1078_RS16715 0.45 +0.6 58,110 + HMPREF1078_RS16715 0.45 -0.7 58,110 + HMPREF1078_RS16715 0.45 -0.1 58,110 + HMPREF1078_RS16715 0.45 +0.8 58,110 + HMPREF1078_RS16715 0.45 -0.5 58,110 + HMPREF1078_RS16715 0.45 -0.1 58,111 - HMPREF1078_RS16715 0.45 +0.7 58,111 - HMPREF1078_RS16715 0.45 +0.0 58,167 + HMPREF1078_RS16715 0.57 -2.8 58,167 + HMPREF1078_RS16715 0.57 +0.4 58,182 - HMPREF1078_RS16715 0.60 -0.3 58,250 - HMPREF1078_RS16715 0.74 +0.2 58,282 + HMPREF1078_RS16715 0.81 -0.2 58,283 - HMPREF1078_RS16715 0.81 -0.4 58,303 + HMPREF1078_RS16715 0.85 -0.2 58,303 + HMPREF1078_RS16715 0.85 -0.4 58,304 - HMPREF1078_RS16715 0.85 -0.8 58,304 - HMPREF1078_RS16715 0.85 +0.5 58,305 + HMPREF1078_RS16715 0.86 +0.4 58,306 - HMPREF1078_RS16715 0.86 +0.2 58,402 - -0.9 58,422 + -1.1 58,422 + -0.8 58,422 + -0.4 58,430 + +0.3 58,435 + -1.4 58,438 + +0.1 58,512 + HMPREF1078_RS16720 0.13 -1.2 58,512 + HMPREF1078_RS16720 0.13 +0.7 58,527 + HMPREF1078_RS16720 0.17 -3.4 58,534 + HMPREF1078_RS16720 0.19 +1.6 58,592 + HMPREF1078_RS16720 0.35 -0.5 58,746 + HMPREF1078_RS16720 0.76 -0.6 58,750 + HMPREF1078_RS16720 0.77 -0.6 58,750 + HMPREF1078_RS16720 0.77 +0.1 58,750 + HMPREF1078_RS16720 0.77 -0.2 58,750 + HMPREF1078_RS16720 0.77 +1.4 58,750 + HMPREF1078_RS16720 0.77 -0.8 58,750 + HMPREF1078_RS16720 0.77 +0.5 58,784 + HMPREF1078_RS16720 0.86 -1.4 58,784 + HMPREF1078_RS16720 0.86 +0.0 58,810 + -1.9 58,812 + -0.6 58,812 + +1.1 58,812 + -0.0
Or see this region's nucleotide sequence