Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS16695

Experiment: Dextrin from potato starch 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS16690 and HMPREF1078_RS16695 are separated by 23 nucleotidesHMPREF1078_RS16695 and HMPREF1078_RS16700 are separated by 910 nucleotides HMPREF1078_RS16690: HMPREF1078_RS16690 - biosynthetic-type acetolactate synthase large subunit, at 50,409 to 52,109 _RS16690 HMPREF1078_RS16695: HMPREF1078_RS16695 - dihydroxy-acid dehydratase, at 52,133 to 53,968 _RS16695 HMPREF1078_RS16700: HMPREF1078_RS16700 - PatB family C-S lyase, at 54,879 to 56,054 _RS16700 Position (kb) 52 53 54Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 51.338 kb on + strand, within HMPREF1078_RS16690at 51.345 kb on - strand, within HMPREF1078_RS16690at 51.537 kb on - strand, within HMPREF1078_RS16690at 51.554 kb on - strand, within HMPREF1078_RS16690at 51.565 kb on + strand, within HMPREF1078_RS16690at 51.566 kb on - strand, within HMPREF1078_RS16690at 51.566 kb on - strand, within HMPREF1078_RS16690at 51.570 kb on + strand, within HMPREF1078_RS16690at 51.586 kb on + strand, within HMPREF1078_RS16690at 51.650 kb on + strand, within HMPREF1078_RS16690at 51.713 kb on - strand, within HMPREF1078_RS16690at 51.738 kb on - strand, within HMPREF1078_RS16690at 51.815 kb on + strand, within HMPREF1078_RS16690at 51.858 kb on - strand, within HMPREF1078_RS16690at 51.858 kb on - strand, within HMPREF1078_RS16690at 51.919 kb on + strand, within HMPREF1078_RS16690at 51.963 kb on + strandat 51.986 kb on - strandat 52.003 kb on + strandat 52.004 kb on - strandat 52.008 kb on - strandat 52.059 kb on + strandat 52.312 kb on + strandat 52.338 kb on - strand, within HMPREF1078_RS16695at 52.338 kb on - strand, within HMPREF1078_RS16695at 52.340 kb on - strand, within HMPREF1078_RS16695at 52.394 kb on - strand, within HMPREF1078_RS16695at 52.463 kb on + strand, within HMPREF1078_RS16695at 52.464 kb on - strand, within HMPREF1078_RS16695at 52.479 kb on - strand, within HMPREF1078_RS16695at 52.482 kb on + strand, within HMPREF1078_RS16695at 52.483 kb on - strand, within HMPREF1078_RS16695at 52.483 kb on - strand, within HMPREF1078_RS16695at 52.691 kb on - strand, within HMPREF1078_RS16695at 52.728 kb on + strand, within HMPREF1078_RS16695at 52.783 kb on + strand, within HMPREF1078_RS16695at 52.783 kb on + strand, within HMPREF1078_RS16695at 52.984 kb on + strand, within HMPREF1078_RS16695at 52.985 kb on - strand, within HMPREF1078_RS16695at 53.246 kb on - strand, within HMPREF1078_RS16695at 53.246 kb on - strand, within HMPREF1078_RS16695at 53.258 kb on + strand, within HMPREF1078_RS16695at 53.259 kb on - strand, within HMPREF1078_RS16695at 53.293 kb on + strand, within HMPREF1078_RS16695at 53.309 kb on - strand, within HMPREF1078_RS16695at 53.320 kb on + strand, within HMPREF1078_RS16695at 53.380 kb on + strand, within HMPREF1078_RS16695at 53.576 kb on + strand, within HMPREF1078_RS16695at 53.577 kb on - strand, within HMPREF1078_RS16695at 53.647 kb on + strand, within HMPREF1078_RS16695at 53.647 kb on + strand, within HMPREF1078_RS16695at 53.650 kb on - strand, within HMPREF1078_RS16695at 53.671 kb on + strand, within HMPREF1078_RS16695at 53.741 kb on - strand, within HMPREF1078_RS16695at 53.805 kb on + strandat 53.805 kb on + strandat 53.805 kb on + strandat 53.805 kb on + strandat 53.805 kb on + strandat 53.807 kb on - strandat 53.856 kb on - strandat 53.975 kb on - strandat 54.017 kb on + strandat 54.022 kb on + strandat 54.032 kb on + strandat 54.033 kb on - strandat 54.035 kb on - strandat 54.069 kb on + strandat 54.076 kb on + strandat 54.076 kb on + strandat 54.083 kb on - strandat 54.085 kb on - strandat 54.155 kb on + strandat 54.155 kb on + strandat 54.156 kb on - strandat 54.162 kb on + strandat 54.162 kb on + strandat 54.162 kb on + strandat 54.163 kb on - strandat 54.163 kb on - strandat 54.163 kb on - strandat 54.163 kb on - strandat 54.224 kb on + strandat 54.225 kb on - strandat 54.225 kb on - strandat 54.225 kb on - strandat 54.347 kb on + strandat 54.380 kb on + strandat 54.398 kb on + strandat 54.399 kb on - strandat 54.399 kb on - strandat 54.419 kb on + strandat 54.421 kb on + strandat 54.421 kb on + strandat 54.422 kb on - strandat 54.515 kb on - strandat 54.632 kb on - strandat 54.666 kb on - strandat 54.709 kb on + strandat 54.727 kb on - strandat 54.727 kb on - strandat 54.727 kb on - strandat 54.793 kb on + strandat 54.839 kb on + strandat 54.840 kb on - strandat 54.869 kb on + strandat 54.877 kb on + strandat 54.878 kb on - strandat 54.888 kb on + strandat 54.888 kb on + strandat 54.889 kb on - strandat 54.937 kb on - strandat 54.946 kb on + strandat 54.947 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C)
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51,338 + HMPREF1078_RS16690 0.55 -2.2
51,345 - HMPREF1078_RS16690 0.55 -2.1
51,537 - HMPREF1078_RS16690 0.66 -3.5
51,554 - HMPREF1078_RS16690 0.67 -0.6
51,565 + HMPREF1078_RS16690 0.68 -1.0
51,566 - HMPREF1078_RS16690 0.68 -2.8
51,566 - HMPREF1078_RS16690 0.68 -0.9
51,570 + HMPREF1078_RS16690 0.68 -1.4
51,586 + HMPREF1078_RS16690 0.69 -1.7
51,650 + HMPREF1078_RS16690 0.73 -1.4
51,713 - HMPREF1078_RS16690 0.77 -0.7
51,738 - HMPREF1078_RS16690 0.78 -1.1
51,815 + HMPREF1078_RS16690 0.83 -2.5
51,858 - HMPREF1078_RS16690 0.85 -0.1
51,858 - HMPREF1078_RS16690 0.85 -0.0
51,919 + HMPREF1078_RS16690 0.89 -1.5
51,963 + +0.4
51,986 - -2.7
52,003 + -0.4
52,004 - -2.2
52,008 - +1.7
52,059 + -4.0
52,312 + -0.4
52,338 - HMPREF1078_RS16695 0.11 -0.6
52,338 - HMPREF1078_RS16695 0.11 -3.2
52,340 - HMPREF1078_RS16695 0.11 -2.8
52,394 - HMPREF1078_RS16695 0.14 -0.4
52,463 + HMPREF1078_RS16695 0.18 -1.4
52,464 - HMPREF1078_RS16695 0.18 -2.6
52,479 - HMPREF1078_RS16695 0.19 -0.6
52,482 + HMPREF1078_RS16695 0.19 -1.8
52,483 - HMPREF1078_RS16695 0.19 -3.3
52,483 - HMPREF1078_RS16695 0.19 +0.6
52,691 - HMPREF1078_RS16695 0.30 -1.9
52,728 + HMPREF1078_RS16695 0.32 -1.1
52,783 + HMPREF1078_RS16695 0.35 -3.8
52,783 + HMPREF1078_RS16695 0.35 -2.2
52,984 + HMPREF1078_RS16695 0.46 -1.7
52,985 - HMPREF1078_RS16695 0.46 -0.4
53,246 - HMPREF1078_RS16695 0.61 -2.2
53,246 - HMPREF1078_RS16695 0.61 -2.2
53,258 + HMPREF1078_RS16695 0.61 +0.7
53,259 - HMPREF1078_RS16695 0.61 +0.7
53,293 + HMPREF1078_RS16695 0.63 -1.9
53,309 - HMPREF1078_RS16695 0.64 -1.6
53,320 + HMPREF1078_RS16695 0.65 -0.7
53,380 + HMPREF1078_RS16695 0.68 -1.3
53,576 + HMPREF1078_RS16695 0.79 -1.4
53,577 - HMPREF1078_RS16695 0.79 -1.0
53,647 + HMPREF1078_RS16695 0.82 -2.6
53,647 + HMPREF1078_RS16695 0.82 +0.9
53,650 - HMPREF1078_RS16695 0.83 -2.9
53,671 + HMPREF1078_RS16695 0.84 -1.4
53,741 - HMPREF1078_RS16695 0.88 -0.2
53,805 + -1.3
53,805 + +0.2
53,805 + -1.5
53,805 + -2.4
53,805 + -3.6
53,807 - -1.3
53,856 - -1.4
53,975 - -1.5
54,017 + -1.0
54,022 + -0.5
54,032 + -4.0
54,033 - +0.9
54,035 - +0.7
54,069 + -0.0
54,076 + -3.2
54,076 + -3.2
54,083 - -0.4
54,085 - -2.8
54,155 + +1.9
54,155 + -2.3
54,156 - +0.4
54,162 + +1.0
54,162 + -1.1
54,162 + -1.6
54,163 - +1.0
54,163 - +0.5
54,163 - -0.6
54,163 - +1.0
54,224 + -2.4
54,225 - +4.2
54,225 - +2.2
54,225 - -0.4
54,347 + -0.2
54,380 + +0.9
54,398 + +0.6
54,399 - +0.3
54,399 - +0.0
54,419 + -0.7
54,421 + +0.1
54,421 + +1.7
54,422 - +0.1
54,515 - -0.1
54,632 - -2.7
54,666 - -0.0
54,709 + +0.2
54,727 - -0.3
54,727 - +1.0
54,727 - -0.3
54,793 + +0.1
54,839 + -0.4
54,840 - +0.1
54,869 + +0.8
54,877 + -0.5
54,878 - -0.4
54,888 + -0.1
54,888 + -0.5
54,889 - +0.7
54,937 - -0.5
54,946 + -0.4
54,947 - -0.2

Or see this region's nucleotide sequence